Lag0012710 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012710
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptiontranscription factor RAX2
Locationchr1: 43601949 .. 43602314 (-)
RNA-Seq ExpressionLag0012710
SyntenyLag0012710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAAGCTTTATCATCAGCTGCTGCATTCTCAACCAATCTTCTAAACAACCCCACAACAACTTTAATCTCCACAACCAATAACAACAACAATAATGCCACTCCATTTCACCAACTACTCTCTCAAGATCAAAGCTTTATCATCAGCTCAATGGGAGCTGATCAAAATAATAATAATTATCGTGTCAAAGCTGAGCATAGCCAGCCCCTTGTGTTTGGAGGGGATCAGGCCAGTTGCAGCTCCTCCGACGCCGAGTACGGAGTCGGGGTCGTCGGAGTCGGAGTCGAGGAGAAGAGGAGAATGAGCTTTGTAGAGTGCTCTAGTAGTGTTGATAATGGGGATGGAATAATGAGAAGCAATTAG

mRNA sequence

ATGATCAAAGCTTTATCATCAGCTGCTGCATTCTCAACCAATCTTCTAAACAACCCCACAACAACTTTAATCTCCACAACCAATAACAACAACAATAATGCCACTCCATTTCACCAACTACTCTCTCAAGATCAAAGCTTTATCATCAGCTCAATGGGAGCTGATCAAAATAATAATAATTATCGTGTCAAAGCTGAGCATAGCCAGCCCCTTGTGTTTGGAGGGGATCAGGCCAGTTGCAGCTCCTCCGACGCCGAGTACGGAGTCGGGGTCGTCGGAGTCGGAGTCGAGGAGAAGAGGAGAATGAGCTTTGTAGAGTGCTCTAGTAGTGTTGATAATGGGGATGGAATAATGAGAAGCAATTAG

Coding sequence (CDS)

ATGATCAAAGCTTTATCATCAGCTGCTGCATTCTCAACCAATCTTCTAAACAACCCCACAACAACTTTAATCTCCACAACCAATAACAACAACAATAATGCCACTCCATTTCACCAACTACTCTCTCAAGATCAAAGCTTTATCATCAGCTCAATGGGAGCTGATCAAAATAATAATAATTATCGTGTCAAAGCTGAGCATAGCCAGCCCCTTGTGTTTGGAGGGGATCAGGCCAGTTGCAGCTCCTCCGACGCCGAGTACGGAGTCGGGGTCGTCGGAGTCGGAGTCGAGGAGAAGAGGAGAATGAGCTTTGTAGAGTGCTCTAGTAGTGTTGATAATGGGGATGGAATAATGAGAAGCAATTAG

Protein sequence

MIKALSSAAAFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEEKRRMSFVECSSSVDNGDGIMRSN
Homology
BLAST of Lag0012710 vs. NCBI nr
Match: XP_016899626.1 (PREDICTED: transcription factor RAX2 [Cucumis melo])

HSP 1 Score: 100.9 bits (250), Expect = 7.9e-18
Identity = 70/121 (57.85%), Postives = 82/121 (67.77%), Query Frame = 0

Query: 1   MIKALSSAAAFSTNLLNNPTTTLISTTNNN-NNNATPF--HQLLSQDQSFIISSMGADQN 60
           +I  L    +FS+NLL NPTTT  +TTNNN NNNATP   HQ +SQDQSF++S+M   + 
Sbjct: 151 LISTLLEPISFSSNLLLNPTTT--TTTNNNPNNNATPLFNHQAVSQDQSFMMSTMVGGE- 210

Query: 61  NNNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEEKRR------MSFVECSSSV 113
            NNY VK    + LVFGGDQ SCSSSDAEYG    G+GVEEKRR      MSFVE S  V
Sbjct: 211 -NNYHVKLGDRRLLVFGGDQGSCSSSDAEYG---GGIGVEEKRRSSSLSSMSFVEWSRVV 264

BLAST of Lag0012710 vs. NCBI nr
Match: XP_038905335.1 (transcription factor RAX2 [Benincasa hispida])

HSP 1 Score: 92.8 bits (229), Expect = 2.2e-15
Identity = 65/121 (53.72%), Postives = 77/121 (63.64%), Query Frame = 0

Query: 1   MIKALSSAAAFSTNLLNNPTTTLISTTNNNNNNATP-FHQLLSQDQSFIISSM-GADQNN 60
           +I       +FS+NLL NPTT       NNNN+ATP FH  LSQDQSF++S M GA+  N
Sbjct: 151 LISTFLEPISFSSNLLLNPTT-------NNNNSATPIFHYQLSQDQSFMMSPMVGAE--N 210

Query: 61  NNYRVKAEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEEKRR-------MSFVECSSSV 113
           +N+ VK +  + LVFGGDQ S SSSD EYG    G GVEEKRR       MSFVECS  V
Sbjct: 211 SNFHVKLDDHRLLVFGGDQGSSSSSDVEYG----GAGVEEKRRSSSSSSSMSFVECSRVV 258

BLAST of Lag0012710 vs. NCBI nr
Match: XP_004137976.1 (transcription factor RAX2 [Cucumis sativus] >KGN59181.2 hypothetical protein Csa_002348 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.5e-13
Identity = 65/122 (53.28%), Postives = 76/122 (62.30%), Query Frame = 0

Query: 1   MIKALSSAAAFSTNLLNNPTTTLISTTNNNNNNATPF--HQLLSQD-QSFIISSMGADQN 60
           +I  L    +FS+NLL NPTTT        NNNATP   HQ +SQD QSF++S+M   + 
Sbjct: 151 LISTLLEPISFSSNLLLNPTTT------TTNNNATPLFNHQAVSQDHQSFMMSTMVGGE- 210

Query: 61  NNNYRVK-AEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVEEKRR------MSFVECSSS 113
            NNY VK  +    LVFGGDQ SCSSSDAEYG    G+GVEEKRR      MSFVE S  
Sbjct: 211 -NNYHVKLGDQRSLLVFGGDQGSCSSSDAEYG---GGIGVEEKRRSLSSSNMSFVEWSRV 261

BLAST of Lag0012710 vs. NCBI nr
Match: KAG6596486.1 (Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-09
Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 5   LSSAAAFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVK 64
           L    +FS+ LLN   T LIST NN            SQDQ+FI++    +Q  NNY VK
Sbjct: 175 LLDTISFSSTLLN--PTNLISTNNNT-----------SQDQTFIVN---PNQVQNNYDVK 234

Query: 65  AEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE-EKRRMSFVE 107
           + H   LVFG DQASCSSSDAEYG G  G+GVE EK+RMSFV+
Sbjct: 235 SNHGL-LVFGRDQASCSSSDAEYGSG-GGIGVEDEKKRMSFVK 259

BLAST of Lag0012710 vs. NCBI nr
Match: XP_022927921.1 (transcription factor RAX2 [Cucurbita moschata])

HSP 1 Score: 71.6 bits (174), Expect = 5.1e-09
Identity = 55/103 (53.40%), Postives = 65/103 (63.11%), Query Frame = 0

Query: 5   LSSAAAFSTNLLNNPTTTLISTTNNNNNNATPFHQLLSQDQSFIISSMGADQNNNNYRVK 64
           L    +FS+ LLN   T LIST NN            SQDQ+FI++    +Q  NNY VK
Sbjct: 175 LLDTISFSSTLLN--PTNLISTNNNT-----------SQDQTFIVN---PNQVQNNYDVK 234

Query: 65  AEHSQPLVFGGDQASCSSSDAEYGVGVVGVGVE-EKRRMSFVE 107
           + H   LVFG DQASCSSSDAEYG G  G+GVE EK+RMSFV+
Sbjct: 235 SNHGL-LVFGRDQASCSSSDAEYGSG-GGIGVEDEKKRMSFVK 259

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_016899626.17.9e-1857.85PREDICTED: transcription factor RAX2 [Cucumis melo][more]
XP_038905335.12.2e-1553.72transcription factor RAX2 [Benincasa hispida][more]
XP_004137976.11.5e-1353.28transcription factor RAX2 [Cucumis sativus] >KGN59181.2 hypothetical protein Csa... [more]
KAG6596486.15.1e-0953.40Transcription factor MYB36, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022927921.15.1e-0953.40transcription factor RAX2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012710.1Lag0012710.1mRNA