Lag0012664 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012664
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Thioredoxin, putative
Location	chr1: 43092787 .. 43093942 (-)
RNA-Seq Expression	Lag0012664
Synteny	Lag0012664

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGACAAGGAGAAGAAGGGGCTAGAAGGCACTGGTTTAGATCTTCCAGTCAATCGCCATGGTAACTTGAAGAGTGCTTCAAGCGATCAAGATTTCAAGGATGTTCTTCTTCAAATCAAGTCCTCCAAAACCACTGTAAACTTCTTTATACTTCATAAATTTTGTTTCCCATTCCCCTAAATCGCTGTCCTCGTTTTATTTCATGGGCCTGTTTGTTTTCTTGGAAAATTGTGTAAACTCGAATGGGATGAAGATTTTAAGTTATGGGTTTTTGATTCTTTCTGTGTTGTAACTGGTTTTGGGATATTGATTGTTTGATTCTATTGTTCAATACTTTGCAGGCAGTTATCAAATATGGTGCATCCTGGTAAGTCCACACTTCTCTCTAGCGGATTGAACGCAAGGTGTTTGAGGTTTTGCCTGTATGAGAAATGCTGAAAGACTAGAATAACAAACGCCTTTCTCTCTCTCTCAACAACATAGGTGATTGGTTTGTTTCATAGCTGATGAATTTAAATATGCCATCTCTTGCTTCAATTTCATTTCACCATTCGTCACTGTTCTTAGCAACACTTTCATAATGGGGAATTGTAAAATTTGTTCCCACTGGTCACTGTTGGACTAATGTTAAAAAGAACTTGCCAACAAAGCTCTGCATTACCATTTCATTGAGGCAGTTGATAGAATCTGGTGCTCAAATTGAGTTGAGAGAAAACATAATCCTGGTGCTAAAATTTGTCAACATTTGAGGGTGGGGATTCGAACCTCTGACCTCATGGTCGAGAGTACATGCCAATTACCGCTGAGCTAAGCTCGCTTTAGCATAATCTGGTGCTAAAATTAAACCTCAGTTTCTTGTTTTAAGAACTCATGGATTGCTTTTATGATATCAGCACCTGCAGGGCTTAGAGGGATTGTTGTTGTTCGTTTCAGGTGTCGTGTGTGCAGTCAGATTCTCCCTGCTTTCTGTCGGCTGAGTAACAATTTTGCAAAGGTTTCTTTCATCTATGCAGATATTGATGAATGCCCAGAAACAACTGAACACATCCGTTACACACCGACATTTCAATTCTATCGAGACGGTGAAAGAGTCGACGAGATGTTTGGTGCCGGGGAAGAACGGCTGCACGACAGGTTGTGGTTGCATTCCTAA

mRNA sequence

ATGGAGGACAAGGAGAAGAAGGGGCTAGAAGGCACTGGTTTAGATCTTCCAGTCAATCGCCATGGTAACTTGAAGAGTGCTTCAAGCGATCAAGATTTCAAGGATGTTCTTCTTCAAATCAAGTCCTCCAAAACCACTGCAGTTATCAAATATGGTGCATCCTGGTGTCGTGTGTGCAGTCAGATTCTCCCTGCTTTCTGTCGGCTGAGTAACAATTTTGCAAAGGTTTCTTTCATCTATGCAGATATTGATGAATGCCCAGAAACAACTGAACACATCCGTTACACACCGACATTTCAATTCTATCGAGACGGTGAAAGAGTCGACGAGATGTTTGGTGCCGGGGAAGAACGGCTGCACGACAGGTTGTGGTTGCATTCCTAA

Coding sequence (CDS)

ATGGAGGACAAGGAGAAGAAGGGGCTAGAAGGCACTGGTTTAGATCTTCCAGTCAATCGCCATGGTAACTTGAAGAGTGCTTCAAGCGATCAAGATTTCAAGGATGTTCTTCTTCAAATCAAGTCCTCCAAAACCACTGCAGTTATCAAATATGGTGCATCCTGGTGTCGTGTGTGCAGTCAGATTCTCCCTGCTTTCTGTCGGCTGAGTAACAATTTTGCAAAGGTTTCTTTCATCTATGCAGATATTGATGAATGCCCAGAAACAACTGAACACATCCGTTACACACCGACATTTCAATTCTATCGAGACGGTGAAAGAGTCGACGAGATGTTTGGTGCCGGGGAAGAACGGCTGCACGACAGGTTGTGGTTGCATTCCTAA

Protein sequence

MEDKEKKGLEGTGLDLPVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVIKYGASWCRVCSQILPAFCRLSNNFAKVSFIYADIDECPETTEHIRYTPTFQFYRDGERVDEMFGAGEERLHDRLWLHS

Homology

[Close]

BLAST of Lag0012664 vs. NCBI nr
Match: XP_022143884.1 (thioredoxin-like 3-3 [Momordica charantia])

HSP 1 Score: 254.2 bits (648), Expect = 5.9e-64
Identity = 120/127 (94.49%), Postives = 122/127 (96.06%), Query Frame = 0


Query: 1   MEDKEKKGLEGTGLDLPVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVIKYGASWCRVCS 60
           MED EKKGLEGTGLDLPVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVI YGASWCRVCS
Sbjct: 1   MEDTEKKGLEGTGLDLPVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVINYGASWCRVCS 60

Query: 61  QILPAFCRLSNNFAKVSFIYADIDECPETTEHIRYTPTFQFYRDGERVDEMFGAGEERLH 120
           QILPAFCRLSNNF K+ FIYADIDECPETT+HIRYTPTF FYRDGERVDEMFGAGEERLH
Sbjct: 61  QILPAFCRLSNNFPKLYFIYADIDECPETTQHIRYTPTFHFYRDGERVDEMFGAGEERLH 120

Query: 121 DRLWLHS 128
           DRLWLHS
Sbjct: 121 DRLWLHS 127

[Close]

BLAST of Lag0012664 vs. NCBI nr
Match: XP_008462474.1 (PREDICTED: thioredoxin-like 3-3 [Cucumis melo] >XP_008462475.1 PREDICTED: thioredoxin-like 3-3 [Cucumis melo] >XP_008462476.1 PREDICTED: thioredoxin-like 3-3 [Cucumis melo] >XP_008462478.1 PREDICTED: thioredoxin-like 3-3 [Cucumis melo] >TYK07313.1 thioredoxin-like 3-3 [Cucumis melo var. makuwa])

HSP 1 Score: 252.3 bits (643), Expect = 2.2e-63
Identity = 120/127 (94.49%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MEDKEKKGLEGTGLDLPVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVIKYGASWCRVCS 60
           MEDKEKKGLEGTG  LPVN HGNLKSASSDQDFKDVLLQIKSSKTTAVI YGASWCRVCS
Sbjct: 1   MEDKEKKGLEGTGSCLPVNHHGNLKSASSDQDFKDVLLQIKSSKTTAVINYGASWCRVCS 60

Query: 61  QILPAFCRLSNNFAKVSFIYADIDECPETTEHIRYTPTFQFYRDGERVDEMFGAGEERLH 120
           QILPAFCRLSNNF KVSFIYADIDECPETT+HIRYTPTF FYRDGERVDEMFGAGEERLH
Sbjct: 61  QILPAFCRLSNNFPKVSFIYADIDECPETTQHIRYTPTFHFYRDGERVDEMFGAGEERLH 120

Query: 121 DRLWLHS 128
           DRLWLHS
Sbjct: 121 DRLWLHS 127

[Close]

BLAST of Lag0012664 vs. NCBI nr
Match: XP_011657665.1 (thioredoxin-like 3-3 [Cucumis sativus] >XP_031742982.1 thioredoxin-like 3-3 [Cucumis sativus] >KGN48189.1 hypothetical protein Csa_003651 [Cucumis sativus])

HSP 1 Score: 251.9 bits (642), Expect = 2.9e-63
Identity = 120/127 (94.49%), Postives = 121/127 (95.28%), Query Frame = 0


Query: 1   MEDKEKKGLEGTGLDLPVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVIKYGASWCRVCS 60
           MEDKEKKGLEGTGL LPVN HGNLKSASSDQDFKDVLLQIKSSKTTAVI YGASWCRVCS
Sbjct: 1   MEDKEKKGLEGTGLCLPVNHHGNLKSASSDQDFKDVLLQIKSSKTTAVINYGASWCRVCS 60

Query: 61  QILPAFCRLSNNFAKVSFIYADIDECPETTEHIRYTPTFQFYRDGERVDEMFGAGEERLH 120
           QILPAFCRLSNNF KVSFIYADIDECPETT+HIRYTPTF FYR GERVDEMFGAGEERLH
Sbjct: 61  QILPAFCRLSNNFPKVSFIYADIDECPETTQHIRYTPTFHFYRGGERVDEMFGAGEERLH 120

Query: 121 DRLWLHS 128
           DRLWLHS
Sbjct: 121 DRLWLHS 127

[Close]

BLAST of Lag0012664 vs. NCBI nr
Match: XP_022963258.1 (thioredoxin-like 3-3 [Cucurbita moschata] >XP_022963259.1 thioredoxin-like 3-3 [Cucurbita moschata] >XP_022963260.1 thioredoxin-like 3-3 [Cucurbita moschata] >XP_022963261.1 thioredoxin-like 3-3 [Cucurbita moschata])

HSP 1 Score: 251.9 bits (642), Expect = 2.9e-63
Identity = 120/127 (94.49%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MEDKEKKGLEGTGLDLPVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVIKYGASWCRVCS 60
           MEDKEKKGLEG GLD  VNRHGNLKSASSDQDFKDVLLQIKSSKTTAVI YGASWCRVCS
Sbjct: 1   MEDKEKKGLEGAGLDPTVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVINYGASWCRVCS 60

Query: 61  QILPAFCRLSNNFAKVSFIYADIDECPETTEHIRYTPTFQFYRDGERVDEMFGAGEERLH 120
           QILPAFCRLSNNF KVSFIYADIDECPETTEHIRYTPTF FYRDGERVDEMFG GEERLH
Sbjct: 61  QILPAFCRLSNNFPKVSFIYADIDECPETTEHIRYTPTFHFYRDGERVDEMFGTGEERLH 120

Query: 121 DRLWLHS 128
           DRLWLHS
Sbjct: 121 DRLWLHS 127

[Close]

BLAST of Lag0012664 vs. NCBI nr
Match: XP_022972722.1 (thioredoxin-like 3-3 [Cucurbita maxima] >XP_022972723.1 thioredoxin-like 3-3 [Cucurbita maxima] >XP_022972724.1 thioredoxin-like 3-3 [Cucurbita maxima] >XP_022972725.1 thioredoxin-like 3-3 [Cucurbita maxima] >XP_023518471.1 thioredoxin-like 3-3 [Cucurbita pepo subsp. pepo] >XP_023518472.1 thioredoxin-like 3-3 [Cucurbita pepo subsp. pepo] >XP_023518473.1 thioredoxin-like 3-3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 250.0 bits (637), Expect = 1.1e-62
Identity = 119/127 (93.70%), Postives = 120/127 (94.49%), Query Frame = 0


Query: 1   MEDKEKKGLEGTGLDLPVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVIKYGASWCRVCS 60
           MEDKEKKGLEG GLD  V+RHGNLKSASSDQDFKDVLLQIKSSKTTAVI YGASWCRVCS
Sbjct: 1   MEDKEKKGLEGAGLDPTVSRHGNLKSASSDQDFKDVLLQIKSSKTTAVINYGASWCRVCS 60

Query: 61  QILPAFCRLSNNFAKVSFIYADIDECPETTEHIRYTPTFQFYRDGERVDEMFGAGEERLH 120
           QILPAFCRLSNNF KVSFIYADIDECPETTEHIRYTPTF FYRDGERVDEMFG GEERLH
Sbjct: 61  QILPAFCRLSNNFPKVSFIYADIDECPETTEHIRYTPTFHFYRDGERVDEMFGTGEERLH 120

Query: 121 DRLWLHS 128
           DRLWLHS
Sbjct: 121 DRLWLHS 127

[Close]

BLAST of Lag0012664 vs. ExPASy Swiss-Prot
Match: Q7XSQ7 (Thioredoxin-like 3-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0560200 PE=2 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 7.7e-51
Identity = 92/125 (73.60%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 3   DKEKKGLEGTGLDLPVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVIKYGASWCRVCSQI 62
           + +K GLEGTGL LP + HGNL+SA SDQ  K +L  +KSSK+ AVI YGASWCRVCSQI
Sbjct: 5   EAKKTGLEGTGLSLPGSSHGNLRSAGSDQQLKQMLDSLKSSKSPAVINYGASWCRVCSQI 64

Query: 63  LPAFCRLSNNFAKVSFIYADIDECPETTEHIRYTPTFQFYRDGERVDEMFGAGEERLHDR 122
           LP FCR SN F  ++FIYADIDECPETT++IRYTPTF FYRDGE+VDEM G GEERLHDR
Sbjct: 65  LPPFCRFSNEFKNLTFIYADIDECPETTQNIRYTPTFHFYRDGEKVDEMLGTGEERLHDR 124

Query: 123 LWLHS 128
           LWLHS
Sbjct: 125 LWLHS 129

[Close]

BLAST of Lag0012664 vs. ExPASy Swiss-Prot
Match: Q8LCH9 (Thioredoxin-like 3-3 OS=Arabidopsis thaliana OX=3702 GN=At3g53220 PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.2e-45
Identity = 87/124 (70.16%), Postives = 101/124 (81.45%), Query Frame = 0


Query: 6   KKGLEGTGLDL--PVNRHGNLKSASSDQDFKDVLLQIKSSKTTAVIKYGASWCRVCSQIL 65
           K+  EG  L+     N +GN+K A +DQ F  +L  IKSSK+ AVI YGASWC VCSQIL
Sbjct: 3   KQESEGANLEFESKSNDNGNVKIAPNDQSFLTILDDIKSSKSPAVINYGASWCGVCSQIL 62

Query: 66  PAFCRLSNNFAKVSFIYADIDECPETTEHIRYTPTFQFYRDGERVDEMFGAGEERLHDRL 125
           PAF +LSN+F+K+ F+YADIDECPETT HIRYTPTFQFYRDGE+VDEMFGAGE+RLHDRL
Sbjct: 63  PAFRKLSNSFSKLKFVYADIDECPETTRHIRYTPTFQFYRDGEKVDEMFGAGEQRLHDRL 122

Query: 126 WLHS 128
           WLHS
Sbjct: 123 WLHS 126

[Close]

BLAST of Lag0012664 vs. ExPASy Swiss-Prot
Match: P85801 (Thioredoxin H-type OS=Populus jackii OX=640484 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 4.6e-11
Identity = 32/104 (30.77%), Postives = 55/104 (52.88%), Query Frame = 0


Query: 22  GNLKSASSDQDFKDVLLQIKSSKTTAVIKYGASWCRVCSQILPAFCRLSNNFAKVSFIYA 81
           GN+   ++ + +   L +        +  + A WC  C QI P +  LS N+  + F+  
Sbjct: 24  GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVI 83

Query: 82  DIDECPE--TTEHIRYTPTFQFYRDGERVDEMFGAGEERLHDRL 124
           D+DE  +   +  I+ TPTF F RDG++VD++ GA +  LH ++
Sbjct: 84  DVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPELHKKI 127

[Close]

BLAST of Lag0012664 vs. ExPASy Swiss-Prot
Match: P29447 (Thioredoxin-3 OS=Dictyostelium discoideum OX=44689 GN=trxC PE=3 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 1.9e-09
Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 48  VIKYGASWCRVCSQILPAFCRLSNNFAKVSFIYADIDE--CPETTEHIRYTPTFQFYRDG 107
           V+ + A WC  C  I P F +LSN F   +F++ DID+       + IR  PTF FY +G
Sbjct: 23  VVDFSAEWCGPCRAIAPVFDKLSNEFTTFTFVHVDIDKVNTHPIVKEIRSVPTFYFYVNG 82

Query: 108 ERVDEMFGAGEERLHDRL 124
            +V E  GA E  L   L
Sbjct: 83  AKVSEFSGANEATLRSTL 100

[Close]

BLAST of Lag0012664 vs. ExPASy Swiss-Prot
Match: P29445 (Thioredoxin-1 OS=Dictyostelium discoideum OX=44689 GN=trxA PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.3e-09
Identity = 31/78 (39.74%), Postives = 41/78 (52.56%), Query Frame = 0


Query: 48  VIKYGASWCRVCSQILPAFCRLSNNFAKVSFIYADIDE--CPETTEHIRYTPTFQFYRDG 107
           V+ + A WC  C  I P F +LSN F   +F++ DID+         I+  PTF FYR+G
Sbjct: 24  VVDFSAVWCGPCRAISPVFEKLSNEFITFTFLHVDIDKLNVHPIVSKIKSVPTFHFYRNG 83

Query: 108 ERVDEMFGAGEERLHDRL 124
            +V E  GA E  L   L
Sbjct: 84  SKVSEFSGASESILRSTL 101

The following BLAST results are available for this feature:

BLAST of Lag0012664 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022143884.1	5.9e-64	94.49	thioredoxin-like 3-3 [Momordica charantia]	[more]
XP_008462474.1	2.2e-63	94.49	PREDICTED: thioredoxin-like 3-3 [Cucumis melo] >XP_008462475.1 PREDICTED: thiore...	[more]
XP_011657665.1	2.9e-63	94.49	thioredoxin-like 3-3 [Cucumis sativus] >XP_031742982.1 thioredoxin-like 3-3 [Cuc...	[more]
XP_022963258.1	2.9e-63	94.49	thioredoxin-like 3-3 [Cucurbita moschata] >XP_022963259.1 thioredoxin-like 3-3 [...	[more]
XP_022972722.1	1.1e-62	93.70	thioredoxin-like 3-3 [Cucurbita maxima] >XP_022972723.1 thioredoxin-like 3-3 [Cu...	[more]

BLAST of Lag0012664 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7XSQ7	7.7e-51	73.60	Thioredoxin-like 3-3 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0560200 PE...	[more]
Q8LCH9	2.2e-45	70.16	Thioredoxin-like 3-3 OS=Arabidopsis thaliana OX=3702 GN=At3g53220 PE=2 SV=1	[more]
P85801	4.6e-11	30.77	Thioredoxin H-type OS=Populus jackii OX=640484 PE=1 SV=1	[more]
P29447	1.9e-09	39.74	Thioredoxin-3 OS=Dictyostelium discoideum OX=44689 GN=trxC PE=3 SV=2	[more]
P29445	3.3e-09	39.74	Thioredoxin-1 OS=Dictyostelium discoideum OX=44689 GN=trxA PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.40.30.10	Glutaredoxin	coord: 15..125 e-value: 5.4E-20 score: 73.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29
None	No IPR available	CDD	cd02947	TRX_family	coord: 37..123 e-value: 1.07478E-20 score: 77.9836
IPR013766	Thioredoxin domain	PFAM	PF00085	Thioredoxin	coord: 29..119 e-value: 2.2E-14 score: 53.3
IPR044193	Thioredoxin-like 3-3	PANTHER	PTHR47571	THIOREDOXIN-LIKE 3-3	coord: 3..127
IPR036249	Thioredoxin-like superfamily	SUPERFAMILY	52833	Thioredoxin-like	coord: 19..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012664.1	Lag0012664.1	mRNA