Lag0012604 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012604
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA-binding protein S1FA
Location	chr1: 42600077 .. 42601507 (-)
RNA-Seq Expression	Lag0012604
Synteny	Lag0012604

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAATACGGCGTCGTTTCAAACCCCGTGGGCGAAACTGGCTTAAATCCACAATCCGCCATTTTCATATCTCCGTTCCTTTTGTATTTTTCTCGAAGCTTCTGCGGTTCGTCTTTGTAGTACATAACTACAACAGTAGCTCGTTGCGAACGCCATCTCTTATTCTCTCCGCTTCTGAATTTCAGCCATGGAAGACGATTTCGAGTTCGGTGACAGAGTCCCGCCGGCCGTCAATCGCATGGTATACTTTCGCCATGTCATTTCTTTCTTTCTTCTTTGCCGCCTAATCTGAGATCTCTGTTAATGCAGCTGCTCCTTTCTTTTTTTCCCTCGAGGTTTTGATTTGTTCATGCTTCTGTGTGTTTATTTTGACGATTTACCTATGATTATCGAGGTTTTTTGCTAGGATTTGATCTCATTTTTCTAATTTCGTTCTTGAGGTCTGATTGTCCGTGTAATCGACTGTAGCAAATAATGCAGTTGAATTTTCTAGGGATCGTCTCTCTGAGTGCCCTTATAAAACTGCATTTGGTAAATGAATGTTTCGTTTATTCTTATATACACACCTCGTTCGGTAATTCTCTTGTATTCTTAGATTTTAGGTGGAATTTCTTCTCTCTTTGTTCATAATTCGGAATCTAATATCTTTCTTCTGAAGAATGGCGCTGTTTTTGCAACGTTTTAAGGATGATGCGGATGTGCATGTGATCAGTGCGTTCTCTGGAGGGAGGAAAAGATTTCAAAAACTGCACACCTTTTTGTAATTTCATCAAAATTATAGGATGCTACATGAAATTGTTAATTCGATCCTATATGTATGACCGAACTTGAATTGGAGGATGGTTTAATTGTTCCTTTTCAGTTAACAAGAATAATTGTCCTGATCTGTTTGATATTGTTAGAGGATGTTCCATGCATCTTTGATGTGGAAAAATCTTTGAGTATACTGTGGATATTCTTCGTAAAGACCCTCTTATTCTGATACATTCACAAGTCAGAAATGGGACATTATACATCAGATATTAGTTTATTTCTGAAGCATAACTTTGCTTGAAAACGTGTAGTTAAGCTCTCTATGCATGAGATTGCTGAAGAAACAAACAGCTTCCTTTCTAGGGCCCTTACAATGACTCATGAGTTTCTTCTACAATTCATTCCTTCTTGTGTATGTTCTAGTTCATGTGCTCAGCAGTAAAATTGGCCTTGGTGCACAGGGAAACGTGATTAGAGATGCAGATGCAAGAGGATTCAATCCAGGACTGATTGTGCTGCTTGTAGTCGGTGGGCTGCTCTTGGCTTTTCTTGTTGGGAATTACACTCTGTACATGTATGCGCAGAAGACTCTCCCACCAAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTGGAGAGTAG

mRNA sequence

ATGAAAATACGGCGTCGTTTCAAACCCCGTGGGCGAAACTGGCTTAAATCCACAATCCGCCATTTTCATATCTCCGTTCCTTTTGTATTTTTCTCGAAGCTTCTGCGGTTCGTCTTTGTAGTACATAACTACAACAGTAGCTCGTTGCGAACGCCATCTCTTATTCTCTCCGCTTCTGAATTTCAGCCATGGAAGACGATTTCGAGTTCGGTGACAGAGTCCCGCCGGCCGTCAATCGCATGCAGTAAAATTGGCCTTGGTGCACAGGGAAACGTGATTAGAGATGCAGATGCAAGAGGATTCAATCCAGGACTGATTGTGCTGCTTGTAGTCGGTGGGCTGCTCTTGGCTTTTCTTGTTGGGAATTACACTCTGTACATGTATGCGCAGAAGACTCTCCCACCAAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTGGAGAGTAG

Coding sequence (CDS)

ATGAAAATACGGCGTCGTTTCAAACCCCGTGGGCGAAACTGGCTTAAATCCACAATCCGCCATTTTCATATCTCCGTTCCTTTTGTATTTTTCTCGAAGCTTCTGCGGTTCGTCTTTGTAGTACATAACTACAACAGTAGCTCGTTGCGAACGCCATCTCTTATTCTCTCCGCTTCTGAATTTCAGCCATGGAAGACGATTTCGAGTTCGGTGACAGAGTCCCGCCGGCCGTCAATCGCATGCAGTAAAATTGGCCTTGGTGCACAGGGAAACGTGATTAGAGATGCAGATGCAAGAGGATTCAATCCAGGACTGATTGTGCTGCTTGTAGTCGGTGGGCTGCTCTTGGCTTTTCTTGTTGGGAATTACACTCTGTACATGTATGCGCAGAAGACTCTCCCACCAAAAAAGAAGAAACCAGTTTCCAAGAAGAAGATGAAGAGGGAGAGATTGAAGCAAGGTATCTCTGCACCTGGAGAGTAG

Protein sequence

MKIRRRFKPRGRNWLKSTIRHFHISVPFVFFSKLLRFVFVVHNYNSSSLRTPSLILSASEFQPWKTISSSVTESRRPSIACSKIGLGAQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGISAPGE

Homology

[Close]

BLAST of Lag0012604 vs. NCBI nr
Match: XP_038881351.1 (DNA-binding protein S1FA-like [Benincasa hispida])

HSP 1 Score: 133.7 bits (335), Expect = 1.5e-27
Identity = 69/71 (97.18%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 90  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRE 149
           GNVIRDADARGFNPGLIVLLVVGGLLLAFL GNY LYMYAQKTLPPKKKKPVSKKKMKRE
Sbjct: 19  GNVIRDADARGFNPGLIVLLVVGGLLLAFLAGNYALYMYAQKTLPPKKKKPVSKKKMKRE 78

Query: 150 RLKQGISAPGE 161
           RLKQGISAPGE
Sbjct: 79  RLKQGISAPGE 89

[Close]

BLAST of Lag0012604 vs. NCBI nr
Match: XP_004143239.1 (DNA-binding protein S1FA [Cucumis sativus] >KGN48135.1 hypothetical protein Csa_003029 [Cucumis sativus])

HSP 1 Score: 130.2 bits (326), Expect = 1.6e-26
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 90  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRE 149
           GNVIRD +ARGFNPGLIVLLVVGGLL AFLVGNY LYMYAQKTLPPKKKKPVSKKKMKRE
Sbjct: 19  GNVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRE 78

Query: 150 RLKQGISAPGE 161
           RLKQG+SAPGE
Sbjct: 79  RLKQGVSAPGE 89

[Close]

BLAST of Lag0012604 vs. NCBI nr
Match: XP_022962636.1 (DNA-binding protein S1FA-like [Cucurbita moschata] >XP_023517292.1 DNA-binding protein S1FA-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 129.4 bits (324), Expect = 2.7e-26
Identity = 66/71 (92.96%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 90  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRE 149
           GNVIR+ADARGFNPGLIVLLVVGGLLLAFL GNY LY+YAQKTLPPK+KKPVSKKKMKRE
Sbjct: 19  GNVIREADARGFNPGLIVLLVVGGLLLAFLAGNYALYVYAQKTLPPKRKKPVSKKKMKRE 78

Query: 150 RLKQGISAPGE 161
           RLKQGISAPGE
Sbjct: 79  RLKQGISAPGE 89

[Close]

BLAST of Lag0012604 vs. NCBI nr
Match: XP_022143745.1 (DNA-binding protein S1FA-like [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 6.1e-26
Identity = 66/71 (92.96%), Postives = 68/71 (95.77%), Query Frame = 0


Query: 90  GNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRE 149
           G VIRDADA GFNPGL+VLLVVGGLLLAFLVGNY LY+YAQKTLPPKKKKPVSKKKMKRE
Sbjct: 19  GKVIRDADAGGFNPGLVVLLVVGGLLLAFLVGNYALYVYAQKTLPPKKKKPVSKKKMKRE 78

Query: 150 RLKQGISAPGE 161
           RLKQGISAPGE
Sbjct: 79  RLKQGISAPGE 89

[Close]

BLAST of Lag0012604 vs. NCBI nr
Match: XP_008449267.1 (PREDICTED: DNA-binding protein S1FA-like [Cucumis melo] >KAA0047276.1 DNA-binding protein S1FA-like [Cucumis melo var. makuwa])

HSP 1 Score: 127.9 bits (320), Expect = 8.0e-26
Identity = 65/70 (92.86%), Postives = 67/70 (95.71%), Query Frame = 0


Query: 91  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRER 150
           NVIRD +ARGFNPGLIVLLVVGGLL AFLVGNY LYMYAQKTLPPKKKKPVSKKKMKRER
Sbjct: 20  NVIRDGEARGFNPGLIVLLVVGGLLFAFLVGNYALYMYAQKTLPPKKKKPVSKKKMKRER 79

Query: 151 LKQGISAPGE 161
           LKQG+SAPGE
Sbjct: 80  LKQGVSAPGE 89

[Close]

BLAST of Lag0012604 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.5e-22
Identity = 51/68 (75.00%), Postives = 60/68 (88.24%), Query Frame = 0


Query: 93  IRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLK 152
           + + +A+G NPGLIVLLV+GGLLL FLVGN+ LY YAQK LPPKKKKP+SKKKMKRERLK
Sbjct: 3   VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLK 62

Query: 153 QGISAPGE 161
           QG++ PGE
Sbjct: 63  QGVAPPGE 70

[Close]

BLAST of Lag0012604 vs. ExPASy Swiss-Prot
Match: P42553 (DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-20
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 91  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRER 150
           N+I +   +G NPG IVLLVV  LL+ F VGNY LYMYAQKTLPP+KKKPVSKKK+KRE+
Sbjct: 7   NMIIEEVNKGLNPGTIVLLVVATLLILFFVGNYALYMYAQKTLPPRKKKPVSKKKLKREK 66

Query: 151 LKQGISAPGE 161
           LKQG+SAPGE
Sbjct: 67  LKQGVSAPGE 76

[Close]

BLAST of Lag0012604 vs. ExPASy Swiss-Prot
Match: Q7XLX6 (DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 1.8e-20
Identity = 50/70 (71.43%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 91  NVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRER 150
           NV+ +   +G NPG+IVL+VV   LL F VGNY LY+YAQKTLPP+KKKPVSKKKMKRE+
Sbjct: 11  NVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKKMKREK 70

Query: 151 LKQGISAPGE 161
           LKQG+SAPGE
Sbjct: 71  LKQGVSAPGE 80

[Close]

BLAST of Lag0012604 vs. ExPASy Swiss-Prot
Match: P42551 (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 100.1 bits (248), Expect = 2.3e-20
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 96  ADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKMKRERLKQGI 155
           A+A+G NPGLIVLLVVGG LL FL+ NY LY+YAQK LPP+KKKPVSKKK+KRE+LKQG+
Sbjct: 12  AEAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGV 71

Query: 156 SAPGE 161
             PGE
Sbjct: 72  PVPGE 76

[Close]

BLAST of Lag0012604 vs. ExPASy Swiss-Prot
Match: Q42337 (DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 99.8 bits (247), Expect = 3.1e-20
Identity = 48/74 (64.86%), Postives = 61/74 (82.43%), Query Frame = 0


Query: 87  GAQGNVIRDADARGFNPGLIVLLVVGGLLLAFLVGNYTLYMYAQKTLPPKKKKPVSKKKM 146
           G+ G  +   +A+G NPGLIVLLV+GGLL+ FL+ NY +YMYAQK LPP+KKKP+SKKK+
Sbjct: 5   GSAGKAV--VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLSKKKL 64

Query: 147 KRERLKQGISAPGE 161
           KRE+LKQG+  PGE
Sbjct: 65  KREKLKQGVPVPGE 76

The following BLAST results are available for this feature:

BLAST of Lag0012604 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038881351.1	1.5e-27	97.18	DNA-binding protein S1FA-like [Benincasa hispida]	[more]
XP_004143239.1	1.6e-26	92.96	DNA-binding protein S1FA [Cucumis sativus] >KGN48135.1 hypothetical protein Csa_...	[more]
XP_022962636.1	2.7e-26	92.96	DNA-binding protein S1FA-like [Cucurbita moschata] >XP_023517292.1 DNA-binding p...	[more]
XP_022143745.1	6.1e-26	92.96	DNA-binding protein S1FA-like [Momordica charantia]	[more]
XP_008449267.1	8.0e-26	92.86	PREDICTED: DNA-binding protein S1FA-like [Cucumis melo] >KAA0047276.1 DNA-bindin...	[more]

BLAST of Lag0012604 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P42552	2.5e-22	75.00	DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1	[more]
P42553	1.8e-20	72.86	DNA-binding protein S1FA1 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA1 PE=3...	[more]
Q7XLX6	1.8e-20	71.43	DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3...	[more]
P42551	2.3e-20	75.38	DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2	[more]
Q42337	3.1e-20	64.86	DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006779	DNA binding protein S1FA	PFAM	PF04689	S1FA	coord: 96..160 e-value: 5.5E-40 score: 135.4
IPR006779	DNA binding protein S1FA	PANTHER	PTHR35298	DNA-BINDING PROTEIN S1FA2	coord: 88..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 135..160
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..150
None	No IPR available	PANTHER	PTHR35298:SF9	DNA-BINDING PROTEIN S1FA1-RELATED	coord: 88..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012604.1	Lag0012604.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding