Lag0012575 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012575
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 42319306 .. 42319794 (+)
RNA-Seq ExpressionLag0012575
SyntenyLag0012575
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTATAGTGGCTCTAACTCCATTGGCCTGCTCATGCCAAATGCAAACAGCTACGACTACACTGGTATGAACCCCTCTCCATTTTTTATCATGGAGTTCGGTTTCACAAGCCAAGACCAGTCTGATGGAGACCCAATTGAAGAAAATCTTGAGGGTGAGCAGACTTACCACAGTCGTTTCGGGTATTTTCCGAATGAGCTCGACTCCTCCAATCTCTTCTTCAATTGCCAAGACCCTTATGGCAATCAAAATGGCTGCGGAATAGAGAATACAGAACTCATTCTCTTCCACAATGAGGATCAACTTGAAGATTACAATGGTGATTCTAGAAACTTGTGCCATGAATTTGCTTGGGATTACTTTCAATCTTGGTTAGGATTTGGAGAAGATGAGCATGGTAATGACTGCAATGGGCAAGACTTGAAACCTGAACATGACTGCAGTTCTGATGCCTTGGCCCTCCTAGAAGCCATCCTGGGATACTAA

mRNA sequence

ATGAGTTATAGTGGCTCTAACTCCATTGGCCTGCTCATGCCAAATGCAAACAGCTACGACTACACTGGTATGAACCCCTCTCCATTTTTTATCATGGAGTTCGGTTTCACAAGCCAAGACCAGTCTGATGGAGACCCAATTGAAGAAAATCTTGAGGGTGAGCAGACTTACCACAGTCGTTTCGGGTATTTTCCGAATGAGCTCGACTCCTCCAATCTCTTCTTCAATTGCCAAGACCCTTATGGCAATCAAAATGGCTGCGGAATAGAGAATACAGAACTCATTCTCTTCCACAATGAGGATCAACTTGAAGATTACAATGGTGATTCTAGAAACTTGTGCCATGAATTTGCTTGGGATTACTTTCAATCTTGGTTAGGATTTGGAGAAGATGAGCATGGTAATGACTGCAATGGGCAAGACTTGAAACCTGAACATGACTGCAGTTCTGATGCCTTGGCCCTCCTAGAAGCCATCCTGGGATACTAA

Coding sequence (CDS)

ATGAGTTATAGTGGCTCTAACTCCATTGGCCTGCTCATGCCAAATGCAAACAGCTACGACTACACTGGTATGAACCCCTCTCCATTTTTTATCATGGAGTTCGGTTTCACAAGCCAAGACCAGTCTGATGGAGACCCAATTGAAGAAAATCTTGAGGGTGAGCAGACTTACCACAGTCGTTTCGGGTATTTTCCGAATGAGCTCGACTCCTCCAATCTCTTCTTCAATTGCCAAGACCCTTATGGCAATCAAAATGGCTGCGGAATAGAGAATACAGAACTCATTCTCTTCCACAATGAGGATCAACTTGAAGATTACAATGGTGATTCTAGAAACTTGTGCCATGAATTTGCTTGGGATTACTTTCAATCTTGGTTAGGATTTGGAGAAGATGAGCATGGTAATGACTGCAATGGGCAAGACTTGAAACCTGAACATGACTGCAGTTCTGATGCCTTGGCCCTCCTAGAAGCCATCCTGGGATACTAA

Protein sequence

MSYSGSNSIGLLMPNANSYDYTGMNPSPFFIMEFGFTSQDQSDGDPIEENLEGEQTYHSRFGYFPNELDSSNLFFNCQDPYGNQNGCGIENTELILFHNEDQLEDYNGDSRNLCHEFAWDYFQSWLGFGEDEHGNDCNGQDLKPEHDCSSDALALLEAILGY
Homology
BLAST of Lag0012575 vs. NCBI nr
Match: KAA0047323.1 (hypothetical protein E6C27_scaffold908G001440 [Cucumis melo var. makuwa])

HSP 1 Score: 208.0 bits (528), Expect = 6.1e-50
Identity = 104/163 (63.80%), Postives = 126/163 (77.30%), Query Frame = 0

Query: 1   MSYSGSNSIGLLMPNANSYDYTGMNPSPFFIMEFGFTSQDQSDGDPIEENLEGEQTYHSR 60
           M Y+GS+SIGLLM NAN Y+Y+        I EFGF SQ QSDGDPI +N E EQTYHS 
Sbjct: 4   MIYNGSDSIGLLMLNANDYNYS--------IAEFGFMSQHQSDGDPIGDNPESEQTYHSC 63

Query: 61  FGYFPNELDSSNLFFNCQDPYGNQNGCGIEN-TELILFHNEDQLEDYNGDSRNLCHEFAW 120
           +G+  NE++ ++LFFNC+ PYGNQNGC  E+ TELIL+ NE+QLEDYNGDSRNL +EF+W
Sbjct: 64  YGWPSNEVEPTDLFFNCEYPYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSW 123

Query: 121 DYFQSWLGFGEDEHGNDCNGQDLKPEHDCSSDALALLEAILGY 163
           D  + W G GE+E G + NGQ+L PE+DC SDALALLEAILGY
Sbjct: 124 DCLRFWFGLGEEEQGQERNGQELTPENDCRSDALALLEAILGY 158

BLAST of Lag0012575 vs. NCBI nr
Match: KGN54204.1 (hypothetical protein Csa_017990 [Cucumis sativus])

HSP 1 Score: 201.8 bits (512), Expect = 4.4e-48
Identity = 103/163 (63.19%), Postives = 122/163 (74.85%), Query Frame = 0

Query: 1   MSYSGSNSIGLLMPNANSYDYTGMNPSPFFIMEFGFTSQDQSDGDPIEENLEGEQTYHSR 60
           M Y+GS+SIGLLM NAN YD          I EFGF SQ QSDGDPI +N E EQ YHS 
Sbjct: 4   MIYNGSDSIGLLMLNANGYD----------IPEFGFMSQHQSDGDPIGDNPESEQAYHSC 63

Query: 61  FGYFPNELDSSNLFFNCQDPYGNQNGCGIEN-TELILFHNEDQLEDYNGDSRNLCHEFAW 120
           +G+  NE++ ++LFFNC+  YGNQNGC  E+ TELIL+ NE+QLEDYNGDSRNL +EF+W
Sbjct: 64  YGWSSNEVNPTDLFFNCEYLYGNQNGCINESTTELILYQNENQLEDYNGDSRNLYYEFSW 123

Query: 121 DYFQSWLGFGEDEHGNDCNGQDLKPEHDCSSDALALLEAILGY 163
           D  + W G GEDE G + NGQ+L PE+DC SDALALLEAILGY
Sbjct: 124 DCLRFWFGIGEDEQGQERNGQELTPENDCRSDALALLEAILGY 156

BLAST of Lag0012575 vs. NCBI nr
Match: KAG6595286.1 (hypothetical protein SDJN03_11839, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.7 bits (509), Expect = 9.8e-48
Identity = 106/163 (65.03%), Postives = 123/163 (75.46%), Query Frame = 0

Query: 1   MSYSGSNSIGLLMPNANSYDYTGMNPSPFFIMEFGFTSQDQ-SDGDPIEENLEGEQTYHS 60
           M+ SGSNSIGLLM NANSYDY G +PSPF+    GFT Q Q SDGDPIE++ EG++T  S
Sbjct: 1   MNCSGSNSIGLLMANANSYDYPGRSPSPFWT---GFTGQHQFSDGDPIEDDPEGDRTNLS 60

Query: 61  RFGYFPNELDSSNLFFNCQDPYGNQNGCGIENTELILFHNEDQLEDYNGDSRNLCHEFAW 120
            F    NELDSS+L FN QDPY NQ+GC +EN ELILFHNEDQ EDY GD RNL +EF W
Sbjct: 61  CFENSQNELDSSDLIFNGQDPYDNQSGCTMENRELILFHNEDQTEDYTGDPRNLYYEFDW 120

Query: 121 DYFQSWLGFGEDEHGNDCNGQDLKPEHDCSSDALALLEAILGY 163
             F+ W G GEDE   D NGQ+L+ E DCSS+A+ALLE+ILGY
Sbjct: 121 ACFRYWFGLGEDE--QDWNGQELRLEQDCSSEAVALLESILGY 158

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047323.16.1e-5063.80hypothetical protein E6C27_scaffold908G001440 [Cucumis melo var. makuwa][more]
KGN54204.14.4e-4863.19hypothetical protein Csa_017990 [Cucumis sativus][more]
KAG6595286.19.8e-4865.03hypothetical protein SDJN03_11839, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012575.1Lag0012575.1mRNA