Lag0012551 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012551
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 42132311 .. 42133348 (-)
RNA-Seq Expression	Lag0012551
Synteny	Lag0012551

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCAAATAGATCATGGCCGCCGGTCAAAGTCACGGTCGCCGGAGCTGAGGTTGACAGGATCAGGTCACATTCTTCGCGGATTCGAACCATTCCAACAACGCCGGCGTCGTCCCTTGTCAACATTAGTCGATTTTCAAACCTACGCATCCATTACCCGGTCATCGTTTCTGGAAGCTTCCATCAAATAGGGTAAAAGAAAAATATAACATAGTCCAGCTTTATTGTTTCTTTTTCACAAAATTTATTTGAGAGATTGACAAAATTGTTACTTGAGGTACTCATTTTAAAACATAAATATATGGTTGGTAAATCAAATGGTAAGTTCATTGTTCATGTTATCTATTCTCAAACTTCTGCATCCTGACTCTTCTTCTAAGTTGTGATGAAGTTTTATATATTTAATCATAATACTTTTTAGTTTTTATACCTCTGCTTAGTTCATGAACTATATTGTGAGTAATGGTTAATTAGTCCACGTAATCTCAATTTTGTAATAATTTAGTTCATAAATTTTAGTGCATATATTAAATGAGTATATCTTTGTTTGTTTAACAATTTTGGCTGGAAATTTCATTCATGGTGAAAAGTCGTACTTTGTGGCTAGCCCGTCGAAGACCCATCCAAGTCATTGCAGATAATGGAAGCCCCTAGAATCCAATTGATGGAAGCTTATCGTTGATGCAGCGTGGTTTGAAGACTCAAACGCTAGAGGAGCAGCCTGGATCATCTGTGACTCTGGAGGTTCTTTGATTGGGACGGGTTGCAAGAAAATCCTAAAGAAATAAGAGATTAAAAATTTGAAAACAAAGGCGATCATTGAAGGCTTGTATCATCTTACAGAGGATGCAAAAATCAGAGGGGAAAGTTATGTGATCTCCCGTTGGAGGTGGAATCGGACTCAGCTGAAGTAATCAATCTCCTCAATCGCAAATCGGAAGATCTCTCGAACCTCTCGTGGCTGATCGAAGATGTGGAGGATTTGGCGCCATTTGCAAATGTCGTTTCGTTCTCCCACTGCATGCCCTCAAACTTGTAA

mRNA sequence

ATGCCAAATAGATCATGGCCGCCGGTCAAAGTCACGGTCGCCGGAGCTGAGGTTGACAGGATCAGGTCACATTCTTCGCGGATTCGAACCATTCCAACAACGCCGGCGTCGTCCCTTGTCAACATTAGTCGATTTTCAAACCTACGCATCCATTACCCGGTCATCGTTTCTGGAAGCTTCCATCAAATAGGAGGATGCAAAAATCAGAGGGGAAAGTTATGTGATCTCCCGTTGGAGGTGGAATCGGACTCAGCTGAAGTAATCAATCTCCTCAATCGCAAATCGGAAGATCTCTCGAACCTCTCGTGGCTGATCGAAGATGTGGAGGATTTGGCGCCATTTGCAAATGTCGTTTCGTTCTCCCACTGCATGCCCTCAAACTTGTAA

Coding sequence (CDS)

ATGCCAAATAGATCATGGCCGCCGGTCAAAGTCACGGTCGCCGGAGCTGAGGTTGACAGGATCAGGTCACATTCTTCGCGGATTCGAACCATTCCAACAACGCCGGCGTCGTCCCTTGTCAACATTAGTCGATTTTCAAACCTACGCATCCATTACCCGGTCATCGTTTCTGGAAGCTTCCATCAAATAGGAGGATGCAAAAATCAGAGGGGAAAGTTATGTGATCTCCCGTTGGAGGTGGAATCGGACTCAGCTGAAGTAATCAATCTCCTCAATCGCAAATCGGAAGATCTCTCGAACCTCTCGTGGCTGATCGAAGATGTGGAGGATTTGGCGCCATTTGCAAATGTCGTTTCGTTCTCCCACTGCATGCCCTCAAACTTGTAA

Protein sequence

MPNRSWPPVKVTVAGAEVDRIRSHSSRIRTIPTTPASSLVNISRFSNLRIHYPVIVSGSFHQIGGCKNQRGKLCDLPLEVESDSAEVINLLNRKSEDLSNLSWLIEDVEDLAPFANVVSFSHCMPSNL

Homology

The following BLAST results are available for this feature:

BLAST of Lag0012551 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0012551 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 77..125 e-value: 2.2E-5 score: 24.3

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012551.1	Lag0012551.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity