Lag0012468 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012468
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionnucleolar complex protein 2 homolog
Locationchr1: 41340787 .. 41342025 (+)
RNA-Seq ExpressionLag0012468
SyntenyLag0012468
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGGAGAAACCCGACACCTCAAAGGGAAACAATCAGTCATTTCAGCTAAACCAACCATGACTTCGAGTGCTGCTAATGGTGATAACAATACAGAAAATCAACAGGACAAGAGTGCTTCTCCACCTGGACATACAGTGATAGTTTTAACCAAAGTTCCATCGGTCAAAGGACGACGAAGGGAAAAAGGCGGTGGCAGAGGCAACATCAAATGTCAAGGTGAAGACCGTTGCACGGTCCAAAGTGATTCGACTCCAACAACTCTACATCTCAATAATGGTTGTGATAGACAATTGCATCAAAAAGACGCCGATGTTGCCACAATGGTCGAACCAGAGGACCTTGCTTGCTACTGAACCAGTGGAATAATGATGAATGTGGATGTAAATTGTGAATTGTGAATCCAAAGTGGGACATTTTTGTCCTGATCATGAGGTATTTGCTCTTGTTGCTGCCATGAAATTCTTGTAGCCACAAATTGTTGTGTTTACTGAAGAGATATCCATTATTTTATTTTTGTTACTTTTCCCTTTAAGGATTATGAAATGAGTCTCTAGTGGGAAGCTGGTATTGATGGTATCGATGCACTCTATACATGCGTTACATGTTCTTAGACCTTTTGTTTGCCTTTCAGGTTGAGCAGAATATTGACTTCGTGCAAAAAAAAAAAAAAAAAAAAAGAGGGATGAAGTCTCATTTTCACCCAAAGATCAGCAAGCTGTTGATTAATTTCTTCAGATTTCCTCTCCTTTTCTTTTTGATCTTCAATTGTTTCAGTTTCTCACTTCTAGCAACTGACAAGTATCATTTGTATTATATGGCAATTACAGCTAGAGAAATGCAACAACAACGTTCCATTTATACAATATTACAAAAGCATATTGGACAAGTCTACATCCAGGAATTTGGCTCTAGATAAAAAGGTACTGTTTTTCCTTTCATGCTTTTGTAGGAGTACTATATAGACGAGACAAGAAATAGTAAGTACTCGATGAGCAGTTGAGAGCGTGCTTAAAAAATTGCATTTGTTGCATCAACTGATAAAGTGGATAGATTTTCCTCACATTATTTGGTTTTCGTAGTTATTATCTTGGTTACCAAAGTTGATCTTGTAGTTTCCTGGAGCCAACAAAAACAAAAAGAAAAGACAGCAGCTGGAAAACGACCAGATCAAATCGGTTGGCGCTAATGGGAAAGTACATTCAGTGAAGGGAAAAGCAAAAAAGAAGAAAACTTGA

mRNA sequence

ATGATTGGAGAAACCCGACACCTCAAAGGGAAACAATCAGTCATTTCAGCTAAACCAACCATGACTTCGAGTGCTGCTAATGGTGATAACAATACAGAAAATCAACAGGACAAGAGTGCTTCTCCACCTGGACATACAGTGATAGTTTTAACCAAAGTTCCATCGGTCAAAGGACGACGAAGGGAAAAAGGCGGTGGCAGAGGCAACATCAAATGTCAAGGTGAAGACCGTTGCACGGTCCAAAGTGATTCGACTCCAACAACTCTACATCTCAATAATGGTTGTGATAGACAATTGCATCAAAAAGACGCCGATGTTGCCACAATGCTAGAGAAATGCAACAACAACGTTCCATTTATACAATATTACAAAAGCATATTGGACAAGTCTACATCCAGGAATTTGGCTCTAGATAAAAAGTTTCCTGGAGCCAACAAAAACAAAAAGAAAAGACAGCAGCTGGAAAACGACCAGATCAAATCGGTTGGCGCTAATGGGAAAGTACATTCAGTGAAGGGAAAAGCAAAAAAGAAGAAAACTTGA

Coding sequence (CDS)

ATGATTGGAGAAACCCGACACCTCAAAGGGAAACAATCAGTCATTTCAGCTAAACCAACCATGACTTCGAGTGCTGCTAATGGTGATAACAATACAGAAAATCAACAGGACAAGAGTGCTTCTCCACCTGGACATACAGTGATAGTTTTAACCAAAGTTCCATCGGTCAAAGGACGACGAAGGGAAAAAGGCGGTGGCAGAGGCAACATCAAATGTCAAGGTGAAGACCGTTGCACGGTCCAAAGTGATTCGACTCCAACAACTCTACATCTCAATAATGGTTGTGATAGACAATTGCATCAAAAAGACGCCGATGTTGCCACAATGCTAGAGAAATGCAACAACAACGTTCCATTTATACAATATTACAAAAGCATATTGGACAAGTCTACATCCAGGAATTTGGCTCTAGATAAAAAGTTTCCTGGAGCCAACAAAAACAAAAAGAAAAGACAGCAGCTGGAAAACGACCAGATCAAATCGGTTGGCGCTAATGGGAAAGTACATTCAGTGAAGGGAAAAGCAAAAAAGAAGAAAACTTGA

Protein sequence

MIGETRHLKGKQSVISAKPTMTSSAANGDNNTENQQDKSASPPGHTVIVLTKVPSVKGRRREKGGGRGNIKCQGEDRCTVQSDSTPTTLHLNNGCDRQLHQKDADVATMLEKCNNNVPFIQYYKSILDKSTSRNLALDKKFPGANKNKKKRQQLENDQIKSVGANGKVHSVKGKAKKKKT
Homology
[Close]
BLAST of Lag0012468 vs. NCBI nr
Match: XP_008460604.1 (PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_008460605.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_008460606.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_008460608.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >XP_016902570.1 PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis melo] >KAA0054119.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 4.3e-20
Identity = 68/129 (52.71%), Postives = 81/129 (62.79%), Query Frame = 0 

Query: 1   MIGETRHLKGKQSVISAKPTMTS--SAANGDNNTEN-QQDKSASPPGHTVIVLTKVPSVK 60
           MIGETRHLKGKQSVIS KP + +  ++AN  NNTEN Q  + A+P  HTV VLTK P V+
Sbjct: 651 MIGETRHLKGKQSVISTKPIIPTIPNSANDANNTENHQHGECAAPSVHTVTVLTKAPLVR 710

Query: 61  GRRREKGGG--RGNIKCQGEDRCTVQS-------------DSTPTTLHLNNGCDRQLHQK 112
           G+ R +G G  RG+IK QG   C  QS              STP +L  NN  DRQLH K
Sbjct: 711 GQGRSRGRGRPRGSIKSQGGGYCKAQSVVVETSSQSFLSIHSTPESLQPNNSWDRQLHMK 770

[Close]
BLAST of Lag0012468 vs. NCBI nr
Match: XP_022133964.1 (nucleolar complex protein 2 homolog isoform X1 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 6.9e-18
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 0 

Query: 110 LEKCNNNVPFIQYYKSILDKSTSRNLALDKKFPGANKNKKKRQQLENDQIKSVGANGKVH 169
           LEKCN+NVPFIQYYKSI+DK+ SRNL LDKKFPG NKNKKK++QL+N+QI+S  ANGK  
Sbjct: 653 LEKCNSNVPFIQYYKSIMDKAGSRNLVLDKKFPGVNKNKKKKRQLKNNQIEST-ANGKGD 712

Query: 170 SVKGKAKKKKT 181
           S KG+AKK+KT
Sbjct: 713 SEKGRAKKRKT 722

[Close]
BLAST of Lag0012468 vs. NCBI nr
Match: XP_022133965.1 (nucleolar complex protein 2 homolog isoform X2 [Momordica charantia])

HSP 1 Score: 101.7 bits (252), Expect = 6.9e-18
Identity = 53/71 (74.65%), Postives = 63/71 (88.73%), Query Frame = 0 

Query: 110 LEKCNNNVPFIQYYKSILDKSTSRNLALDKKFPGANKNKKKRQQLENDQIKSVGANGKVH 169
           LEKCN+NVPFIQYYKSI+DK+ SRNL LDKKFPG NKNKKK++QL+N+QI+S  ANGK  
Sbjct: 597 LEKCNSNVPFIQYYKSIMDKAGSRNLVLDKKFPGVNKNKKKKRQLKNNQIEST-ANGKGD 656

Query: 170 SVKGKAKKKKT 181
           S KG+AKK+KT
Sbjct: 657 SEKGRAKKRKT 666

[Close]
BLAST of Lag0012468 vs. NCBI nr
Match: XP_031741301.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X2 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-17
Identity = 66/128 (51.56%), Postives = 77/128 (60.16%), Query Frame = 0 

Query: 1   MIGETRHLKGKQSVISAKP-TMTSSAANGDNNTEN-QQDKSASPPGHTVIVLTKVPSVKG 60
           MIGETRHLKGKQSVIS KP T   S+ N  NNTEN Q  + ASP  HTV VLTK   V+G
Sbjct: 632 MIGETRHLKGKQSVISTKPITTIPSSTNDANNTENHQHGECASPSVHTVRVLTKASLVRG 691

Query: 61  RRREKGGG--RGNIKCQGEDRCTVQS-------------DSTPTTLHLNNGCDRQLHQKD 112
           + R +G G  RG+IK +G   C  QS              ST  +L  NNG DRQLH +D
Sbjct: 692 QGRSRGRGRPRGSIKSKGGGYCKAQSVVVETSSPSFLSLHSTSESLQSNNGWDRQLHIED 751

[Close]
BLAST of Lag0012468 vs. NCBI nr
Match: XP_011654504.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >XP_031741300.1 serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >KAE8648238.1 hypothetical protein Csa_018425 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.2e-17
Identity = 66/128 (51.56%), Postives = 77/128 (60.16%), Query Frame = 0 

Query: 1   MIGETRHLKGKQSVISAKP-TMTSSAANGDNNTEN-QQDKSASPPGHTVIVLTKVPSVKG 60
           MIGETRHLKGKQSVIS KP T   S+ N  NNTEN Q  + ASP  HTV VLTK   V+G
Sbjct: 651 MIGETRHLKGKQSVISTKPITTIPSSTNDANNTENHQHGECASPSVHTVRVLTKASLVRG 710

Query: 61  RRREKGGG--RGNIKCQGEDRCTVQS-------------DSTPTTLHLNNGCDRQLHQKD 112
           + R +G G  RG+IK +G   C  QS              ST  +L  NNG DRQLH +D
Sbjct: 711 QGRSRGRGRPRGSIKSKGGGYCKAQSVVVETSSPSFLSLHSTSESLQSNNGWDRQLHIED 770

The following BLAST results are available for this feature:
BLAST of Lag0012468 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008460604.14.3e-2052.71PREDICTED: serine/threonine-protein phosphatase 7 long form homolog [Cucumis mel... [more]
XP_022133964.16.9e-1874.65nucleolar complex protein 2 homolog isoform X1 [Momordica charantia][more]
XP_022133965.16.9e-1874.65nucleolar complex protein 2 homolog isoform X2 [Momordica charantia][more]
XP_031741301.11.2e-1751.56serine/threonine-protein phosphatase 7 long form homolog isoform X2 [Cucumis sat... [more]
XP_011654504.11.2e-1751.56serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sat... [more]
BLAST of Lag0012468 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 15..42
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 140..180
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012468.1Lag0012468.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance
biological_process GO:0042273 ribosomal large subunit biogenesis
cellular_component GO:0030690 Noc1p-Noc2p complex
cellular_component GO:0030691 Noc2p-Noc3p complex
cellular_component GO:0005730 nucleolus
cellular_component GO:0005654 nucleoplasm