Lag0012387 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012387
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon RE1
Locationchr1: 40638981 .. 40639708 (+)
RNA-Seq ExpressionLag0012387
SyntenyLag0012387
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTACTCCTTCCAAGGTCGACATCCGCCAGCGAAGCTTGCTGCTATGGCTGCGTCCTCTACGTCGAACAATTTTGCCTCTGGTGTTGGGAGTGTTGGATGTTCGAACAGTGCATTTCCTCAAGATTCTCAAGTCTGGTTGTCTGATACCGGCTGCAACGCTCACCTGGCAAGTGATCTGGCTAATCTCAGCATCTCCAATGCCTACAATGGAGAAGAAAATATTACAGTGGGTAATGGTCATTCTCTTCCTATATCTCATTCTGGTTCTAGCCGAATCTCTCTAGCTGATAACACTTTTACCTTGTCAAACCTTCTTCGAGTTTCCAATATTGATACTAATCTTCTCTCAGTTCACCAATTCTGTTTAGATAACAACTGTTCCTTTATTTTTTATGCCTCTTCCTTCACGATTCAGGACAAAACTACGGGCAAACCTCTGTTCCAAGGCCTAGCGTGAACGGCCTCTACCCTATCTCTGCCTCGTCCATGTCTACTGCACAAGTAAGCCTTACTGCTAATGTAGGTACCAAGAATTCATACAGTGTGTGGCACGATAGGTTAGGTCATCCATCTACTTCTGTTCTTCAACACCTGTTAAACTCGATTGATTGTTCTGTTTCTAAACATACTTTGCTTATCGGTAAGCATTGCCTTGATGGAAAAATGGCCAAATGGCCAAATTACCCTTTCCCTTATCTACTACTTCTACTGTTGCACCATTAG

mRNA sequence

ATGAACTACTCCTTCCAAGGTCGACATCCGCCAGCGAAGCTTGCTGCTATGGCTGCGTCCTCTACGTCGAACAATTTTGCCTCTGGTGTTGGGAGTGTTGGATGTTCGAACAGTGCATTTCCTCAAGATTCTCAAGTCTGGTTGTCTGATACCGGCTGCAACGCTCACCTGGCAAGTGATCTGGCTAATCTCAGCATCTCCAATGCCTACAATGGAGAAGAAAATATTACAGTGGGACAAAACTACGGGCAAACCTCTGTTCCAAGGCCTAGCGTGAACGGCCTCTACCCTATCTCTGCCTCGTCCATGTCTACTGCACAAGTAAGCCTTACTGCTAATGTAGGTACCAAGAATTCATACAGTGTGTGGCACGATAGGTTAGGTCATCCATCTACTTCTGTTCTTCAACACCTGTTAAACTCGATTGATTGTTCTGTTTCTAAACATACTTTGCTTATCGGTAAGCATTGCCTTGATGGAAAAATGGCCAAATGGCCAAATTACCCTTTCCCTTATCTACTACTTCTACTGTTGCACCATTAG

Coding sequence (CDS)

ATGAACTACTCCTTCCAAGGTCGACATCCGCCAGCGAAGCTTGCTGCTATGGCTGCGTCCTCTACGTCGAACAATTTTGCCTCTGGTGTTGGGAGTGTTGGATGTTCGAACAGTGCATTTCCTCAAGATTCTCAAGTCTGGTTGTCTGATACCGGCTGCAACGCTCACCTGGCAAGTGATCTGGCTAATCTCAGCATCTCCAATGCCTACAATGGAGAAGAAAATATTACAGTGGGACAAAACTACGGGCAAACCTCTGTTCCAAGGCCTAGCGTGAACGGCCTCTACCCTATCTCTGCCTCGTCCATGTCTACTGCACAAGTAAGCCTTACTGCTAATGTAGGTACCAAGAATTCATACAGTGTGTGGCACGATAGGTTAGGTCATCCATCTACTTCTGTTCTTCAACACCTGTTAAACTCGATTGATTGTTCTGTTTCTAAACATACTTTGCTTATCGGTAAGCATTGCCTTGATGGAAAAATGGCCAAATGGCCAAATTACCCTTTCCCTTATCTACTACTTCTACTGTTGCACCATTAG

Protein sequence

MNYSFQGRHPPAKLAAMAASSTSNNFASGVGSVGCSNSAFPQDSQVWLSDTGCNAHLASDLANLSISNAYNGEENITVGQNYGQTSVPRPSVNGLYPISASSMSTAQVSLTANVGTKNSYSVWHDRLGHPSTSVLQHLLNSIDCSVSKHTLLIGKHCLDGKMAKWPNYPFPYLLLLLLHH
Homology
BLAST of Lag0012387 vs. NCBI nr
Match: RVW31473.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 90.5 bits (223), Expect = 1.6e-14
Identity = 58/149 (38.93%), Postives = 82/149 (55.03%), Query Frame = 0

Query: 1   MNYSFQGRHPPAKLAAMAASSTSNNFASGVGSVGCSNSAFPQDSQVWLSDTGCNAHLASD 60
           MNY+FQ RHPP +LAAM A                +N+ +    Q W  D+G N H+  D
Sbjct: 335 MNYAFQERHPPTELAAMVAE---------------ANTTYLNHHQ-WYVDSGANIHVTFD 394

Query: 61  LANLSISNAYNGEENITVGQ-NYGQTSVPRPSVNGLYPISASSMSTAQV-SLTANVGTKN 120
            ANL+IS  Y G +  TVG    G T +  PS  GLYPI+   +S+++  + +  VG K 
Sbjct: 395 TANLTISQPYEGTD--TVGDLKTGDTLMTGPSNRGLYPINLQQLSSSKFHAFSMVVGVKA 454

Query: 121 SYSVWHDRLGHPSTSVLQHLLNSIDCSVS 148
           S + WH RLGHPS+S L ++L++    +S
Sbjct: 455 STATWHCRLGHPSSSTLHNVLHNYSLPIS 465

BLAST of Lag0012387 vs. NCBI nr
Match: RVW58434.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 90.1 bits (222), Expect = 2.1e-14
Identity = 60/180 (33.33%), Postives = 85/180 (47.22%), Query Frame = 0

Query: 1   MNYSFQGRHPPAKLAAMAASSTSNNFASGVGSVGCSNSAFPQDSQVWLSDTGCNAHLASD 60
           M+Y++QGRHPP +LAAM A S +                  Q+ + W +D+G N H+ ++
Sbjct: 210 MDYAYQGRHPPTQLAAMVAHSNAE-----------------QEEETWFADSGANQHITAN 269

Query: 61  LANLSISNAYNGEENITVGQNY---------------------------GQTSVPRPSVN 120
           L +L++   Y G+EN+ VG                              G T +   S  
Sbjct: 270 LEHLTLQQPYTGQENVAVGNGQGLSIAHTGTTIFHTPEAKLNLKRDIQTGATLLEGRSEG 329

Query: 121 GLYPISASSMS-TAQVSLTANVGTKNSYSVWHDRLGHPSTSVLQHLLNS----IDCSVSK 149
           GLYPI   SMS     +L+A VG K S SVWH RLGH S  ++  LLN     ++ SV+K
Sbjct: 330 GLYPIQLRSMSINKSHALSAVVGIKASVSVWHSRLGHASLPIVSQLLNKHSLPVEGSVNK 372

BLAST of Lag0012387 vs. NCBI nr
Match: XP_022147875.1 (mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Momordica charantia])

HSP 1 Score: 89.7 bits (221), Expect = 2.7e-14
Identity = 60/145 (41.38%), Postives = 77/145 (53.10%), Query Frame = 0

Query: 1   MNYSFQGRHPPAKLAAMAASSTSNNFASGVGSVGCSNSAFPQDSQVWLSDTGCNAHLASD 60
           MNYSFQG HPP +L AM ASS S                      VWL+D+GC+ HL  D
Sbjct: 1   MNYSFQGHHPPPQLTAMVASSNS----------------------VWLTDSGCSTHLTPD 60

Query: 61  LANLSISNAYNGEENITVGQ---NYGQTSVPR---------PSVNGLYPISASSMSTAQV 120
           LANL+ISN YNG       Q   ++G +   R         P +NGLYPI+A+    A+ 
Sbjct: 61  LANLTISNDYNGGRRYHSRQWSKSHGFSLWFRKSNIVLFKGPCLNGLYPITAT--LDARK 120

Query: 121 SLTANVGTKNSYSVWHDRLGHPSTS 134
              A++  K S+ +WH+RLGHPS S
Sbjct: 121 GFVAHLVAKVSHLLWHNRLGHPSAS 121

BLAST of Lag0012387 vs. NCBI nr
Match: KAA8548185.1 (hypothetical protein F0562_004554 [Nyssa sinensis])

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-14
Identity = 51/142 (35.92%), Postives = 79/142 (55.63%), Query Frame = 0

Query: 1   MNYSFQGRHPPAKLAAMAASSTSNNFASGVGSVGCSNSAFPQDSQVWLSDTGCNAHLASD 60
           MN++++GR P  KL AMAA ++SN                   S  W+SD+G + H+ +D
Sbjct: 275 MNHAYEGRIPTQKLTAMAAIASSN-----------------IPSTTWISDSGASNHITAD 334

Query: 61  LANLSISNAYNGEENITVGQNYGQTSVPRPSVNGLYPISA-SSMSTAQVSLTANVGTKNS 120
           L NL+I N Y G++++ VG   G+ +    S +GLYP    + +ST      A VG + S
Sbjct: 335 LTNLAIHNEYQGKDHVAVGCKDGEDAFRGKSEHGLYPFRIHTQISTKSGRPFALVGVRVS 394

Query: 121 YSVWHDRLGHPSTSVLQHLLNS 142
             +WH RLGHP+ + L HL+++
Sbjct: 395 VPIWHSRLGHPANNTLSHLISN 399

BLAST of Lag0012387 vs. NCBI nr
Match: RVW82846.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 89.0 bits (219), Expect = 4.6e-14
Identity = 57/149 (38.26%), Postives = 81/149 (54.36%), Query Frame = 0

Query: 1   MNYSFQGRHPPAKLAAMAASSTSNNFASGVGSVGCSNSAFPQDSQVWLSDTGCNAHLASD 60
           MNY+FQ RHPP +LAAM                  +N+ +    Q W  D+G N H+  D
Sbjct: 361 MNYAFQERHPPTELAAMVTE---------------ANTTYLNHHQ-WYVDSGANIHVTFD 420

Query: 61  LANLSISNAYNGEENITVGQ-NYGQTSVPRPSVNGLYPISASSMSTAQV-SLTANVGTKN 120
            ANL+IS  Y G +  TVG    G T +  PS  GLYPI+   +S+++  + +  VG K 
Sbjct: 421 TANLTISQPYEGTD--TVGDLKTGDTLMTGPSNRGLYPINLQQLSSSKFHAFSMVVGVKA 480

Query: 121 SYSVWHDRLGHPSTSVLQHLLNSIDCSVS 148
           S + WH RLGHPS+S L ++L++    +S
Sbjct: 481 STATWHCRLGHPSSSTLHNVLHNYSLPIS 491

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW31473.11.6e-1438.93Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW58434.12.1e-1433.33Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera][more]
XP_022147875.12.7e-1441.38mitotic checkpoint serine/threonine-protein kinase BUB1 isoform X1 [Momordica ch... [more]
KAA8548185.13.5e-1435.92hypothetical protein F0562_004554 [Nyssa sinensis][more]
RVW82846.14.6e-1438.26Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 94..159
e-value: 6.2E-11
score: 42.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012387.1Lag0012387.1mRNA