Lag0012381 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012381
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Endo-1,3(4)-beta-glucanase
Location	chr1: 40577065 .. 40577535 (-)
RNA-Seq Expression	Lag0012381
Synteny	Lag0012381

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTAGCTCACACATTGCACCGGCAACTCTTGCCGGAAAATCAAACCGTTCTTCAAAATCTCCGGTATGGCAGCATCGACGGCGACCTACTGGGCATTGTCGGAGACTCATGGGATCTGAAACGCGACGTTGAGACTTTAAACGTTATAGAGCTTTCGTCACCGACAGCGTCTTATTTCTACAGGAAGTTGCTAGCCAGAGCTGCGAGATTAGCACAGATCTATCCCACGCGAAACGTGCCCAGATCTGGCGACGATCTTCGTCGGAACGCGTGCCCAGATCTTGTTTCTTTGTCTCCGATGACCATCTTCGGCGTATCCAGATCTCGTGTGTTTCACGGGTGTGCTCGATTTCGGCGAGGATTTGATCTTCAAGGTAGGGGTGATCACCATAAGCATCTGAAAGAGTTTCAACGGGAGGGAAAGGAAGAAAGAGAGAAAGAAAAGAAGAAGGAAGGAGAAGAAAATTAA

mRNA sequence

ATGTTAGCTCACACATTGCACCGGCAACTCTTGCCGGAAAATCAAACCGTTCTTCAAAATCTCCGGTATGGCAGCATCGACGGCGACCTACTGGGCATTGTCGGAGACTCATGGGATCTGAAACGCGACGTTGAGACTTTAAACGTTATAGAGCTTTCGTCACCGACAGCGTCTTATTTCTACAGGAAGTTGCTAGCCAGAGCTGCGAGATTAGCACAGATCTATCCCACGCGAAACGTGCCCAGATCTGGCGACGATCTTCGTCGGAACGCGTGCCCAGATCTTGTTTCTTTGTCTCCGATGACCATCTTCGGCGTATCCAGATCTCGTGTGTTTCACGGGTGTGCTCGATTTCGGCGAGGATTTGATCTTCAAGGTAGGGGTGATCACCATAAGCATCTGAAAGAGTTTCAACGGGAGGGAAAGGAAGAAAGAGAGAAAGAAAAGAAGAAGGAAGGAGAAGAAAATTAA

Coding sequence (CDS)

ATGTTAGCTCACACATTGCACCGGCAACTCTTGCCGGAAAATCAAACCGTTCTTCAAAATCTCCGGTATGGCAGCATCGACGGCGACCTACTGGGCATTGTCGGAGACTCATGGGATCTGAAACGCGACGTTGAGACTTTAAACGTTATAGAGCTTTCGTCACCGACAGCGTCTTATTTCTACAGGAAGTTGCTAGCCAGAGCTGCGAGATTAGCACAGATCTATCCCACGCGAAACGTGCCCAGATCTGGCGACGATCTTCGTCGGAACGCGTGCCCAGATCTTGTTTCTTTGTCTCCGATGACCATCTTCGGCGTATCCAGATCTCGTGTGTTTCACGGGTGTGCTCGATTTCGGCGAGGATTTGATCTTCAAGGTAGGGGTGATCACCATAAGCATCTGAAAGAGTTTCAACGGGAGGGAAAGGAAGAAAGAGAGAAAGAAAAGAAGAAGGAAGGAGAAGAAAATTAA

Protein sequence

MLAHTLHRQLLPENQTVLQNLRYGSIDGDLLGIVGDSWDLKRDVETLNVIELSSPTASYFYRKLLARAARLAQIYPTRNVPRSGDDLRRNACPDLVSLSPMTIFGVSRSRVFHGCARFRRGFDLQGRGDHHKHLKEFQREGKEEREKEKKKEGEEN

Homology

[Close]

BLAST of Lag0012381 vs. NCBI nr
Match: KAA0039339.1 (putative endo-1,3(4)-beta-glucanase 2 precursor [Cucumis melo var. makuwa] >TYK00522.1 putative endo-1,3(4)-beta-glucanase 2 precursor [Cucumis melo var. makuwa])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 78/173 (45.09%), Postives = 86/173 (49.71%), Query Frame = 0


Query: 1   MLAHTLHRQLLPENQTVLQNLRYGSIDGDLLGIVGDSWD--------------------- 60
           MLAHTLHR++LP +QTVLQNLRY SIDGDLLG+VGDSWD                     
Sbjct: 268 MLAHTLHREILPRDQTVLQNLRYSSIDGDLLGVVGDSWDLKFNPIPITWHSINGIDSKFF 327

Query: 61  ------LKRDVETLNVIELSSPTASYFYRKLLARAARLAQI-----YPTRNVPRSGDDLR 120
                 LKRDV TLNV ELSS  ASYFY KLLARAARLA I     Y    +P     L+
Sbjct: 328 PEIVAALKRDVATLNVTELSSTPASYFYGKLLARAARLALIAEEVNYGASVIPAVVKFLK 387

Query: 121 RNACPDLVSLSPMTIFGVSRS----RVFHGCARFRRGFDLQGRGDHHKHLKEF 138
               P L+   P   F   R        +G       F      DHH HL  F
Sbjct: 388 NGIQPWLIGKFPKNGFLYERKWAGLVTKNGATSTIEDFGFGIYNDHHFHLGYF 440

[Close]

BLAST of Lag0012381 vs. NCBI nr
Match: NP_001315392.1 (putative endo-1,3(4)-beta-glucanase 2 precursor [Cucumis melo] >AMP41497.1 beta-1,3-glucanase 2 [Cucumis melo] >ANB86004.1 beta-1,3-glucanase 2 [Cucumis melo] >ANB86008.1 beta-1,3-glucanase 2 [Cucumis melo] >AXM43892.1 beta-1,3-glucanase A [Cucumis melo] >AXM43893.1 beta-1,3-glucanase A [Cucumis melo])

HSP 1 Score: 113.6 bits (283), Expect = 1.5e-21
Identity = 78/173 (45.09%), Postives = 86/173 (49.71%), Query Frame = 0


Query: 1   MLAHTLHRQLLPENQTVLQNLRYGSIDGDLLGIVGDSWD--------------------- 60
           MLAHTLHR++LP +QTVLQNLRY SIDGDLLG+VGDSWD                     
Sbjct: 268 MLAHTLHREILPRDQTVLQNLRYSSIDGDLLGVVGDSWDLKFNPIPITWHSINGINSKFF 327

Query: 61  ------LKRDVETLNVIELSSPTASYFYRKLLARAARLAQI-----YPTRNVPRSGDDLR 120
                 LKRDV TLNV ELSS  ASYFY KLLARAARLA I     Y    +P     L+
Sbjct: 328 PEIVAALKRDVATLNVTELSSTPASYFYGKLLARAARLALIAEEVNYGASVIPAVVKFLK 387

Query: 121 RNACPDLVSLSPMTIFGVSRS----RVFHGCARFRRGFDLQGRGDHHKHLKEF 138
               P L+   P   F   R        +G       F      DHH HL  F
Sbjct: 388 NGIQPWLIGKFPKNGFLYERKWAGLVTKNGATSTIEDFGFGIYNDHHFHLGYF 440

[Close]

BLAST of Lag0012381 vs. NCBI nr
Match: XP_011656051.1 (putative endo-1,3(4)-beta-glucanase 2 [Cucumis sativus] >KGN52617.1 hypothetical protein Csa_008831 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 9.9e-21
Identity = 76/173 (43.93%), Postives = 85/173 (49.13%), Query Frame = 0


Query: 1   MLAHTLHRQLLPENQTVLQNLRYGSIDGDLLGIVGDSWD--------------------- 60
           MLAHTLHR++LP +QTVLQN+RY SIDGDLLG+VGDSWD                     
Sbjct: 268 MLAHTLHREILPRDQTVLQNIRYSSIDGDLLGVVGDSWDLKFNPIPITWHSINGIDSKFF 327

Query: 61  ------LKRDVETLNVIELSSPTASYFYRKLLARAARLAQIYPTRN-----VPRSGDDLR 120
                 LKRDV TLN  ELSS  ASYFY KLLARAARLA I    N     +P     L+
Sbjct: 328 PEIVAALKRDVATLNATELSSMPASYFYGKLLARAARLALIAEEVNGGAGVIPAVVKFLK 387

Query: 121 RNACPDLVSLSPMTIFGVSRS----RVFHGCARFRRGFDLQGRGDHHKHLKEF 138
               P L+   P   F   R        +G       F      DHH HL  F
Sbjct: 388 NGIQPWLIGKFPKNGFLYERKWAGLVTKNGATSTTEDFGFGIYNDHHFHLGYF 440

[Close]

BLAST of Lag0012381 vs. NCBI nr
Match: XP_038889504.1 (putative endo-1,3(4)-beta-glucanase 2 [Benincasa hispida])

HSP 1 Score: 108.6 bits (270), Expect = 4.9e-20
Identity = 76/173 (43.93%), Postives = 84/173 (48.55%), Query Frame = 0


Query: 1   MLAHTLHRQLLPENQTVLQNLRYGSIDGDLLGIVGDSWD--------------------- 60
           MLAH LHRQ+L  NQTVL NLRYGSIDGDLLG+VGDSWD                     
Sbjct: 295 MLAHPLHRQILSRNQTVLPNLRYGSIDGDLLGVVGDSWDLNFNPVPITWHSINGIDKKFF 354

Query: 61  ------LKRDVETLNVIELSSPTASYFYRKLLARAARLAQIYPTRN-----VPRSGDDLR 120
                 LKRDV TLNV ELSS  +SYFY KLLARAARLA I    +     +P     L+
Sbjct: 355 PEIVAALKRDVATLNVTELSSTASSYFYAKLLARAARLALIAEEVDNGAGVIPAVVRFLK 414

Query: 121 RNACPDLVSLSPMTIFGVSRS----RVFHGCARFRRGFDLQGRGDHHKHLKEF 138
               P L+   P   F   R        +G       F      DHH HL  F
Sbjct: 415 NGIQPWLIGKFPKNGFLYERKWAGLVTKNGATSTTEDFGFGIYNDHHFHLGYF 467

[Close]

BLAST of Lag0012381 vs. NCBI nr
Match: XP_022973486.1 (putative endo-1,3(4)-beta-glucanase 2 [Cucurbita maxima])

HSP 1 Score: 104.8 bits (260), Expect = 7.1e-19
Identity = 59/101 (58.42%), Postives = 64/101 (63.37%), Query Frame = 0


Query: 1   MLAHTLHRQLLPENQTVLQNLRYGSIDGDLLGIVGDSWD--------------------- 60
           MLAH LHR++LPEN TVLQN +YGSIDGDL+G+VGDSWD                     
Sbjct: 268 MLAHPLHRRVLPENLTVLQNFKYGSIDGDLVGVVGDSWDLNFAPIPITWHSINGIERKFF 327

Query: 61  ------LKRDVETLNVIELSSPTASYFYRKLLARAARLAQI 75
                 LK DV TLNV ELSS  ASYFY KLLARAARLA I
Sbjct: 328 PEIVAALKHDVGTLNVTELSSTAASYFYGKLLARAARLALI 368

The following BLAST results are available for this feature:

BLAST of Lag0012381 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039339.1	1.5e-21	45.09	putative endo-1,3(4)-beta-glucanase 2 precursor [Cucumis melo var. makuwa] >TYK0...	[more]
NP_001315392.1	1.5e-21	45.09	putative endo-1,3(4)-beta-glucanase 2 precursor [Cucumis melo] >AMP41497.1 beta-...	[more]
XP_011656051.1	9.9e-21	43.93	putative endo-1,3(4)-beta-glucanase 2 [Cucumis sativus] >KGN52617.1 hypothetical...	[more]
XP_038889504.1	4.9e-20	43.93	putative endo-1,3(4)-beta-glucanase 2 [Benincasa hispida]	[more]
XP_022973486.1	7.1e-19	58.42	putative endo-1,3(4)-beta-glucanase 2 [Cucurbita maxima]	[more]

BLAST of Lag0012381 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 134..154
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 129..156
None	No IPR available	PANTHER	PTHR31983:SF13	ENDO-1,3(4)-BETA-GLUCANASE ARB_01444-RELATED	coord: 40..75 coord: 1..42
IPR005200	Endo-1,3(4)-beta-glucanase	PANTHER	PTHR31983	ENDO-1,3(4)-BETA-GLUCANASE 1	coord: 40..75 coord: 1..42

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012381.1	Lag0012381.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0052861	glucan endo-1,3-beta-glucanase activity, C-3 substituted reducing group