Lag0012302 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012302
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr1: 39765110 .. 39766728 (+)
RNA-Seq Expression	Lag0012302
Synteny	Lag0012302

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGGAGACCACCATTCATTTTGGGGGGAATTTGAAGCTCAAGCAGAGTCAGAGAATCAGATAATCATCAGATGAGACTGAGACTCCTGAATCCACAAGTTCAAAGTGCTGAACACTTCTGAAGACTGAGATCCAAGATTGAAGACTCAAGCTCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGATCACAGATCACAAGCTAACGACCGATCAAGAAGATCAACAAGTCAGCAGGCTGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAATCATCAAGCCGACAGGCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGATCAACAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAAGTTGATCATCTAAGAAGCCCAACAAACCGGCCCAAGAAGAGCAACAAGCTAGAGGCCAAATTTATATATTTAAGAGAGAGAATCAGAGGATTAAAGTTAGAGATTGTACACCCACACGCATACAACATTAATACAAATATATTATTTATTCCACGTGTCTCCATCCCCGAAGTTACGTGTGAACAAATTGGCACGCCCAGTGGGACCATCTCTACCTCTCATCTCTCTCTCTTATCTCAAAACATAAAAGTAAATATGTCATTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCTTACATGGGTTCTACTGCCCATCGTTGCTTCAACGGACTGACGTTGCAAAAGATAAAGCTTCTGTCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACAACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTACTCCAAACCTTATACTAAGAGGATTGATAATTTGAGAACGCCAGTCGGGTATCAGCCATCGAAATTTCAACAATTTGATGGAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTGCTAG

mRNA sequence

ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGATTGAAGACTCAAGCTCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGATCACAGATCACAAGCTAACGACCGATCAAGAAGATCAACAAGTCAGCAGGCTGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAATCATCAAGCCGACAGGCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGATCAACAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAATAAATATGTCATTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCTTACATGGGTTCTACTGCCCATCGTTGCTTCAACGGACTGACGTTGCAAAAGATAAAGCTTCTGTCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACAACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTACTCCAAACCTTATACTAAGAGGATTGATAATTTGAGAACGCCAGTCGGGTATCAGCCATCGAAATTTCAACAATTTGATGGAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTGCTAG

Coding sequence (CDS)

ATGCCACGTGGCAATTGGACCCAAGCCCAAGCCCATATGAGATTGAAGACTCAAGCTCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGATCACAGATCACAAGCTAACGACCGATCAAGAAGATCAACAAGTCAGCAGGCTGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAATCATCAAGCCGACAGGCGATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAACAGGCCGATCATCCAAGAGATCAACAAGCCAACAGGCCGATCCAAGAGATCATCAACCTAGCAATAAATATGTCATTCAAGACTTCTTCAATGGTCGCTGTCATGAACAAGTCTTACATGGGTTCTACTGCCCATCGTTGCTTCAACGGACTGACGTTGCAAAAGATAAAGCTTCTGTCGTTGCAGGCCAAGAAACAACCTTGCAGGGGGCATATACTAATGACAAGTTTTTTGTCAAGTATAACCCTTTGTTTGAACCTGATTCTGACGTAGTGACTGTTATGATGACTGAGACAAGAACTATGGAAGAAAGAATGGCTGAGATGCAAGAACACATCAACAACTTGATGAAGGCGATTGAAGAAAAAGATTCTCAAATTGAGCAACTAAAGAGCCAAATTGAGAACCAACATATCGCCGAATCAAGTCAAACCCAAGTCGTAAAAAATCACAACAAAGGAAAGTCTATAGTGCAAGATGATCATCCACAATGTTCTGCTTCGGTCGCTTCACTATCCATCCAACAGCTCCAAGATATGATCACAAACTGTATCAGAGCTCAGTACGGTGGACCTACTCAAGATTCCCTCTTGTACTCCAAACCTTATACTAAGAGGATTGATAATTTGAGAACGCCAGTCGGGTATCAGCCATCGAAATTTCAACAATTTGATGGAAAGGCAATCCTAAACAACATATTGCCCACTTCGTTGAGACATGCGAGAACGCTGGTACTCGAGGGGACCTGCTAG

Protein sequence

MPRGNWTQAQAHMRLKTQAPRDQQANRPIKKINKSAGRSSKRSTSQPITDHKLTTDQEDQQVSRLIIQEDQQANKPIQQSSSRQAIQEINKPTDRSRRSTSQQADHPRDQQANRPIKKINKSAGRSSRRSTSQQADHPRDQQANRPIKKINKSTGRSSKRSTSQQADPRDHQPSNKYVIQDFFNGRCHEQVLHGFYCPSLLQRTDVAKDKASVVAGQETTLQGAYTNDKFFVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGKAILNNILPTSLRHARTLVLEGTC

Homology

[Close]

BLAST of Lag0012302 vs. NCBI nr
Match: KAA0034095.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-38
Identity = 89/154 (57.79%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 233 KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQ 292
           +YN L E      P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ 
Sbjct: 64  EYNSLSECSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNH 123

Query: 293 IENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIRAQYGGPT 352
           IE++  AESS T  +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ+MI N I+ QYGGP 
Sbjct: 124 IESRDAAESSHTHTMKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPA 183

Query: 353 QDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK 381
           Q   LYSKPYTKRIDNLR P GYQP KFQQFDGK
Sbjct: 184 QTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGK 217

[Close]

BLAST of Lag0012302 vs. NCBI nr
Match: KAA0050518.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 1.6e-38
Identity = 85/141 (60.28%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 240 PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQ 299
           P  ++++VM+T+  T E+RMAE+++ +N LMKA+EEKD +I  LK+ IE++  AESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALLKNHIESRDAAESSHTH 136

Query: 300 VVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKR 359
            +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ+MI N I+ QYGGP Q   LYSKPYTKR
Sbjct: 137 TIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKR 196

Query: 360 IDNLRTPVGYQPSKFQQFDGK 381
           IDN+R P GYQP KFQQFDGK
Sbjct: 197 IDNMRMPHGYQPPKFQQFDGK 217

[Close]

BLAST of Lag0012302 vs. NCBI nr
Match: KAA0047477.1 (uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa])

HSP 1 Score: 170.2 bits (430), Expect = 3.5e-38
Identity = 84/141 (59.57%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 240 PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQ 299
           P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ IE++  AESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNHIESRDAAESSHTH 136

Query: 300 VVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKR 359
            +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ+MI N I+ QYGGP Q   LYSKPYTKR
Sbjct: 137 TIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKR 196

Query: 360 IDNLRTPVGYQPSKFQQFDGK 381
           IDN+R P GYQP KFQQFDGK
Sbjct: 197 IDNMRMPHGYQPPKFQQFDGK 217

[Close]

BLAST of Lag0012302 vs. NCBI nr
Match: KAA0051994.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.7 bits (426), Expect = 1.0e-37
Identity = 83/141 (58.87%), Postives = 109/141 (77.30%), Query Frame = 0


Query: 240 PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQ 299
           P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ IE++   ESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAIESSHTH 136

Query: 300 VVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKR 359
           ++KN NKGK+I+Q+  PQ S S+ASLS+QQL +MI N I+ QYGGP Q   LYSKPYTKR
Sbjct: 137 IIKNVNKGKAIMQESQPQNSTSIASLSVQQLHEMIANSIKTQYGGPAQTFSLYSKPYTKR 196

Query: 360 IDNLRTPVGYQPSKFQQFDGK 381
           IDNLR P GYQP KFQQFDGK
Sbjct: 197 IDNLRMPNGYQPPKFQQFDGK 217

[Close]

BLAST of Lag0012302 vs. NCBI nr
Match: XP_031742199.1 (uncharacterized protein LOC105435721 [Cucumis sativus])

HSP 1 Score: 167.9 bits (424), Expect = 1.8e-37
Identity = 93/155 (60.00%), Postives = 114/155 (73.55%), Query Frame = 0


Query: 227 NDKFFVKYNPLFEPDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQ 286
           ND        L E   DV++VMM +   +E  MAEM+  IN LMK ++E+D +I  LK Q
Sbjct: 64  NDYDSASSRSLKEAHPDVMSVMMADV-AVETAMAEMERKINLLMKVVDERDHEIAALKEQ 123

Query: 287 IENQHIAESSQTQVVKNHNKGKSIVQDDHP-QCSASVASLSIQQLQDMITNCIRAQYGGP 346
           ++ +  AESSQT VVK  +KGK++VQ++ P Q S SVASLS+QQLQDMITN IRAQYGGP
Sbjct: 124 MQTRETAESSQTPVVKVDDKGKNVVQENQPQQQSTSVASLSVQQLQDMITNSIRAQYGGP 183

Query: 347 TQDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK 381
           +Q S +YSKPYTKRIDNLR P+GYQP KFQQFDGK
Sbjct: 184 SQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGK 217

[Close]

BLAST of Lag0012302 vs. ExPASy TrEMBL
Match: A0A5A7SY17 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00830 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.7e-39
Identity = 89/154 (57.79%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 233 KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQ 292
           +YN L E      P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ 
Sbjct: 64  EYNSLSECSNEEVPQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNH 123

Query: 293 IENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIRAQYGGPT 352
           IE++  AESS T  +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ+MI N I+ QYGGP 
Sbjct: 124 IESRDAAESSHTHTMKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPA 183

Query: 353 QDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK 381
           Q   LYSKPYTKRIDNLR P GYQP KFQQFDGK
Sbjct: 184 QTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGK 217

[Close]

BLAST of Lag0012302 vs. ExPASy TrEMBL
Match: A0A5A7U5H1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001620 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.7e-39
Identity = 85/141 (60.28%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 240 PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQ 299
           P  ++++VM+T+  T E+RMAE+++ +N LMKA+EEKD +I  LK+ IE++  AESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEEKDFEIALLKNHIESRDAAESSHTH 136

Query: 300 VVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKR 359
            +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ+MI N I+ QYGGP Q   LYSKPYTKR
Sbjct: 137 TIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKR 196

Query: 360 IDNLRTPVGYQPSKFQQFDGK 381
           IDN+R P GYQP KFQQFDGK
Sbjct: 197 IDNMRMPHGYQPPKFQQFDGK 217

[Close]

BLAST of Lag0012302 vs. ExPASy TrEMBL
Match: A0A5A7TZU9 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.7e-38
Identity = 84/141 (59.57%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 240 PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQ 299
           P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ IE++  AESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIALLKNHIESRDAAESSHTH 136

Query: 300 VVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKR 359
            +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ+MI N I+ QYGGP Q   LYSKPYTKR
Sbjct: 137 TIKNANKGKAIMQESQPQNSTSIASLSVQQLQEMIANSIKTQYGGPAQTFSLYSKPYTKR 196

Query: 360 IDNLRTPVGYQPSKFQQFDGK 381
           IDN+R P GYQP KFQQFDGK
Sbjct: 197 IDNMRMPHGYQPPKFQQFDGK 217

[Close]

BLAST of Lag0012302 vs. ExPASy TrEMBL
Match: A0A5A7U9H0 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001980 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-38
Identity = 83/141 (58.87%), Postives = 109/141 (77.30%), Query Frame = 0


Query: 240 PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQIENQHIAESSQTQ 299
           P  ++++VM+T+  T E+RMAE+++ +N LMKA+EE+D +I  LK+ IE++   ESS T 
Sbjct: 77  PQPNIMSVMVTDVDTSEDRMAELEKKVNMLMKAVEERDFEIASLKNHIESRDAIESSHTH 136

Query: 300 VVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIRAQYGGPTQDSLLYSKPYTKR 359
           ++KN NKGK+I+Q+  PQ S S+ASLS+QQL +MI N I+ QYGGP Q   LYSKPYTKR
Sbjct: 137 IIKNVNKGKAIMQESQPQNSTSIASLSVQQLHEMIANSIKTQYGGPAQTFSLYSKPYTKR 196

Query: 360 IDNLRTPVGYQPSKFQQFDGK 381
           IDNLR P GYQP KFQQFDGK
Sbjct: 197 IDNLRMPNGYQPPKFQQFDGK 217

[Close]

BLAST of Lag0012302 vs. ExPASy TrEMBL
Match: A0A5A7U7I7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold293G00450 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.2e-37
Identity = 85/154 (55.19%), Postives = 115/154 (74.68%), Query Frame = 0


Query: 233 KYNPLFE------PDSDVVTVMMTETRTMEERMAEMQEHINNLMKAIEEKDSQIEQLKSQ 292
           +YN L E      P  ++++VM+T+  T E+RMAE+++++N LMKA++E+D +I  LK+ 
Sbjct: 64  EYNSLPERSNEEVPQPNIMSVMVTDVDTSEDRMAELEKNVNMLMKAVKERDFEIALLKNH 123

Query: 293 IENQHIAESSQTQVVKNHNKGKSIVQDDHPQCSASVASLSIQQLQDMITNCIRAQYGGPT 352
           IE++  AESS    +KN NKGK+I+Q+  PQ S S+ASLS+QQLQ++I N I+ QYGGP 
Sbjct: 124 IESRDAAESSHIHTIKNANKGKAIMQESQPQNSTSIASLSVQQLQEIIANSIKTQYGGPA 183

Query: 353 QDSLLYSKPYTKRIDNLRTPVGYQPSKFQQFDGK 381
           Q   LYSKPYTKRIDN+R P GYQP KFQQFDGK
Sbjct: 184 QTFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGK 217

The following BLAST results are available for this feature:

BLAST of Lag0012302 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034095.1	1.6e-38	57.79	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0050518.1	1.6e-38	60.28	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0047477.1	3.5e-38	59.57	uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]	[more]
KAA0051994.1	1.0e-37	58.87	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK04565.1 ty3-gyp...	[more]
XP_031742199.1	1.8e-37	60.00	uncharacterized protein LOC105435721 [Cucumis sativus]	[more]

BLAST of Lag0012302 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0012302 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SY17	7.7e-39	57.79	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7U5H1	7.7e-39	60.28	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TZU9	1.7e-38	59.57	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00940...	[more]
A0A5A7U9H0	5.0e-38	58.87	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7U7I7	3.2e-37	55.19	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Lag0012302 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 252..293
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 125..140
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..115
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 147..171
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 59..89

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012302.1	Lag0012302.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0140640	catalytic activity, acting on a nucleic acid
molecular_function	GO:0003676	nucleic acid binding