Lag0012171 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012171
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase, RNA-dependent DNA polymerase
Location	chr1: 38254297 .. 38254809 (-)
RNA-Seq Expression	Lag0012171
Synteny	Lag0012171

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCATCGTCAATCATTCTGTCATGAATTCCGCCGCATCCACCGGAACAACAAGCTTCAACAGCCCGCCGCTTAATCAACTGTTGAACCAGGTCACCACCATCAAATTGGATCGAGGAAATTTCCTTTTATGGAAGAACCTTGCTCTACCGATCCTTCGTAGCTACAGGTTGGAAGGTCATCTAACTGGAGCTACACCCTCTCCACCGCAGTTTCCTCAAGTAGCAACAGCAAGGGTAAATCCCAATTCTCAAGTTGAAGCTGAAGCTGGTTCTACCAGCTCTGCTGCTATTGCAAGTGTTGCAGCTGAGTCAATTCCGATGGCAGAGGTAAGTCCGTTGTATGAATCGTGGATTGTAGTCGATCAGCTGTTGTTGGGTTGGTTATACAACTCTATGACCCCTGAGGTCGCAACTCAAGTAATGGGTTTCGACAATGCCAAGGAACTGTGGACAACAATACAAGAATTGTTTGGCATTCAGTCGCGTGGCGAGGAGGATTATCTCCGCTAG

mRNA sequence

ATGGCCATCGTCAATCATTCTGTCATGAATTCCGCCGCATCCACCGGAACAACAAGCTTCAACAGCCCGCCGCTTAATCAACTGTTGAACCAGGTCACCACCATCAAATTGGATCGAGGAAATTTCCTTTTATGGAAGAACCTTGCTCTACCGATCCTTCGTAGCTACAGGTTGGAAGGTCATCTAACTGGAGCTACACCCTCTCCACCGCAGTTTCCTCAAGTAGCAACAGCAAGGGTAAATCCCAATTCTCAAGTTGAAGCTGAAGCTGGTTCTACCAGCTCTGCTGCTATTGCAAGTGTTGCAGCTGAGTCAATTCCGATGGCAGAGGTAAGTCCGTTGTATGAATCGTGGATTGTAGTCGATCAGCTGTTGTTGGGTTGGTTATACAACTCTATGACCCCTGAGGTCGCAACTCAAGTAATGGGTTTCGACAATGCCAAGGAACTGTGGACAACAATACAAGAATTGTTTGGCATTCAGTCGCGTGGCGAGGAGGATTATCTCCGCTAG

Coding sequence (CDS)

ATGGCCATCGTCAATCATTCTGTCATGAATTCCGCCGCATCCACCGGAACAACAAGCTTCAACAGCCCGCCGCTTAATCAACTGTTGAACCAGGTCACCACCATCAAATTGGATCGAGGAAATTTCCTTTTATGGAAGAACCTTGCTCTACCGATCCTTCGTAGCTACAGGTTGGAAGGTCATCTAACTGGAGCTACACCCTCTCCACCGCAGTTTCCTCAAGTAGCAACAGCAAGGGTAAATCCCAATTCTCAAGTTGAAGCTGAAGCTGGTTCTACCAGCTCTGCTGCTATTGCAAGTGTTGCAGCTGAGTCAATTCCGATGGCAGAGGTAAGTCCGTTGTATGAATCGTGGATTGTAGTCGATCAGCTGTTGTTGGGTTGGTTATACAACTCTATGACCCCTGAGGTCGCAACTCAAGTAATGGGTTTCGACAATGCCAAGGAACTGTGGACAACAATACAAGAATTGTTTGGCATTCAGTCGCGTGGCGAGGAGGATTATCTCCGCTAG

Protein sequence

MAIVNHSVMNSAASTGTTSFNSPPLNQLLNQVTTIKLDRGNFLLWKNLALPILRSYRLEGHLTGATPSPPQFPQVATARVNPNSQVEAEAGSTSSAAIASVAAESIPMAEVSPLYESWIVVDQLLLGWLYNSMTPEVATQVMGFDNAKELWTTIQELFGIQSRGEEDYLR

Homology

[Close]

BLAST of Lag0012171 vs. NCBI nr
Match: KAA0067279.1 (uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-38
Identity = 88/159 (55.35%), Postives = 108/159 (67.92%), Query Frame = 0


Query: 11  SAASTGTTSFNSPPLNQLLNQVTTIKLDRGNFLLWKNLALPILRSYRLEGHLTGATPSPP 70
           S  +T TTSF +P LNQ+LNQ+TTIKLDRGN+LLWK LALPIL+SY+L  HL G +P  P
Sbjct: 8   SVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLP 67

Query: 71  QFPQVATARVNPNSQVEAEAGSTSSAAIASVAAESIPMAEVSPLYESWIVVDQLLLGWLY 130
           +   + T    PN  +   AG  S       ++ S  +  V+P YE WI  D LLLGWLY
Sbjct: 68  KIIMLTT---QPNESIVENAGEPSQ----ETSSSSTAVVTVNPKYERWITTDLLLLGWLY 127

Query: 131 NSMTPEVATQVMGFDNAKELWTTIQELFGIQSRGEEDYL 170
           NSMTPEV  Q+MGF NAK+LW   Q+LFGIQSR +ED+L
Sbjct: 128 NSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFL 159

[Close]

BLAST of Lag0012171 vs. NCBI nr
Match: XP_016900937.1 (PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo])

HSP 1 Score: 169.9 bits (429), Expect = 1.9e-38
Identity = 88/159 (55.35%), Postives = 108/159 (67.92%), Query Frame = 0


Query: 11  SAASTGTTSFNSPPLNQLLNQVTTIKLDRGNFLLWKNLALPILRSYRLEGHLTGATPSPP 70
           S  +T TTSF +P LNQ+LNQ+TTIKLDRGN+LLWK LALPIL+SY+L  HL G +P  P
Sbjct: 83  SVTATPTTSFTNPLLNQILNQLTTIKLDRGNYLLWKTLALPILKSYKLNSHLFGESPCLP 142

Query: 71  QFPQVATARVNPNSQVEAEAGSTSSAAIASVAAESIPMAEVSPLYESWIVVDQLLLGWLY 130
           +   + T    PN  +   AG  S       ++ S  +  V+P YE WI  D LLLGWLY
Sbjct: 143 KIIMLTT---QPNESIVENAGEPSQ----ETSSSSTAVVTVNPKYERWITTDLLLLGWLY 202

Query: 131 NSMTPEVATQVMGFDNAKELWTTIQELFGIQSRGEEDYL 170
           NSMTPEV  Q+MGF NAK+LW   Q+LFGIQSR +ED+L
Sbjct: 203 NSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFL 234

[Close]

BLAST of Lag0012171 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37
Identity = 90/151 (59.60%), Postives = 109/151 (72.19%), Query Frame = 0


Query: 20  FNSPPLNQLLNQVTTIKLDRGNFLLWKNLALPILRSYRLEGHLTGATPSPPQFPQVATAR 79
           F SPPLNQLLNQ+T+IK+DRGNFLLW+NLALPILRSY+L  +LTG  P PP      T  
Sbjct: 22  FTSPPLNQLLNQITSIKMDRGNFLLWQNLALPILRSYKLFDYLTGDKPCPP------THL 81

Query: 80  VNPNSQVEAEAGSTSSAAIASVAAESIPMAEVSPLYESWIVVDQLLLGWLYNSMTPEVAT 139
           V  ++    E GSTSS        +S P   ++P YE+WIVVD+LLLGWLYNSM  +VA 
Sbjct: 82  VPTDTPTNIE-GSTSS--------QSSP--TLNPTYEAWIVVDKLLLGWLYNSMAADVAM 141

Query: 140 QVMGFDNAKELWTTIQELFGIQSRGEEDYLR 171
           QVMGF  ++ELWT +QELFG+QSR E DYL+
Sbjct: 142 QVMGFSTSRELWTAVQELFGVQSRAEVDYLK 155

[Close]

BLAST of Lag0012171 vs. NCBI nr
Match: XP_016902203.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 4.8e-37
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 0


Query: 14  STGTTSFNSPPLNQLLNQVTTIKLDRGNFLLWKNLALPILRSYRLEGHLTGATPSPPQFP 73
           S  +  F++PPLNQ+LNQ+TT+KLDR N+LLWK LALPIL+ Y+LEGHLT  TP P  F 
Sbjct: 12  SLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHF- 71

Query: 74  QVATARVNPNSQVEAEAGSTSSAAIASVAAESIPMAEVSPLYESWIVVDQLLLGWLYNSM 133
            V +A  +  +  E  A +T        A+ SI    V+PL+E W+  D LLLGWLYNSM
Sbjct: 72  -VLSASSSNTTVTEEGADATIG------ASSSITPRIVNPLFEQWVTTDLLLLGWLYNSM 131

Query: 134 TPEVATQVMGFDNAKELWTTIQELFGIQSRGEEDYLR 171
           TP+VA Q+MGF N ++LW   Q+ FG+QSR EED+LR
Sbjct: 132 TPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

[Close]

BLAST of Lag0012171 vs. NCBI nr
Match: XP_016902205.1 (PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 4.8e-37
Identity = 84/157 (53.50%), Postives = 108/157 (68.79%), Query Frame = 0


Query: 14  STGTTSFNSPPLNQLLNQVTTIKLDRGNFLLWKNLALPILRSYRLEGHLTGATPSPPQFP 73
           S  +  F++PPLNQ+LNQ+TT+KLDR N+LLWK LALPIL+ Y+LEGHLT  TP P  F 
Sbjct: 12  SLSSAGFSNPPLNQILNQLTTVKLDRKNYLLWKTLALPILKDYKLEGHLTAETPCPSHF- 71

Query: 74  QVATARVNPNSQVEAEAGSTSSAAIASVAAESIPMAEVSPLYESWIVVDQLLLGWLYNSM 133
            V +A  +  +  E  A +T        A+ SI    V+PL+E W+  D LLLGWLYNSM
Sbjct: 72  -VLSASSSNTTVTEEGADATIG------ASSSITPRIVNPLFEQWVTTDLLLLGWLYNSM 131

Query: 134 TPEVATQVMGFDNAKELWTTIQELFGIQSRGEEDYLR 171
           TP+VA Q+MGF N ++LW   Q+ FG+QSR EED+LR
Sbjct: 132 TPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLR 160

The following BLAST results are available for this feature:

BLAST of Lag0012171 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067279.1	1.9e-38	55.35	uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]	[more]
XP_016900937.1	1.9e-38	55.35	PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]	[more]
XP_022151683.1	1.6e-37	59.60	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
XP_016902203.1	4.8e-37	53.50	PREDICTED: uncharacterized protein LOC107991581 isoform X3 [Cucumis melo]	[more]
XP_016902205.1	4.8e-37	53.50	PREDICTED: uncharacterized protein LOC107991581 isoform X5 [Cucumis melo]	[more]

BLAST of Lag0012171 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR47481:SF3	GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATED	coord: 17..162
None	No IPR available	PANTHER	PTHR47481	FAMILY NOT NAMED	coord: 17..162

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012171.1	Lag0012171.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process