Lag0012169 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012169
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr1: 38186514 .. 38186948 (+)
RNA-Seq ExpressionLag0012169
SyntenyLag0012169
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACGAGGAAGGGCAACACCCGGTTTGCTCGAAGGGATCCAAAGGTGATCAGAGTATGGCTACTGAGCATGAGAACGATGCGAGACGGGAAGGAGAATCTCAAACAAAGGAGCTAGAGGAGCAAATAGAGAAACTTAGTTTGATAGAACAAGAGAAACGAAGAGTGGTTAAGATCGAAGAGGAAGACATCAAAGAAACAAATAGAGATTTTACAATGATGAGAGCCTGCAAGATCCTATCCAATAGGATAGTCAACCAAGAGATGTTTATGAGCAAGATACCAAGAATATGGGGCCTGGAAGGGAGAGTGGTCGTAGAAAAGGCAGGAATGAATGTTTACCTTTGTAAATTTGGAAATCAAAGAGACAAAAACAGAGTCACCAAAGGGGGACCCTGGAGCTTTGACAACAGCCTACTTGTCTTCGATGAGTGA

mRNA sequence

ATGGACGAGGAAGGGCAACACCCGGTTTGCTCGAAGGGATCCAAAGGTGATCAGAGTATGGCTACTGAGCATGAGAACGATGCGAGACGGGAAGGAGAATCTCAAACAAAGGAGCTAGAGGAGCAAATAGAGAAACTTAGTTTGATAGAACAAGAGAAACGAAGAGTGGTTAAGATCGAAGAGGAAGACATCAAAGAAACAAATAGAGATTTTACAATGATGAGAGCCTGCAAGATCCTATCCAATAGGATAGTCAACCAAGAGATGTTTATGAGCAAGATACCAAGAATATGGGGCCTGGAAGGGAGAGTGGTCGTAGAAAAGGCAGGAATGAATGTTTACCTTTGTAAATTTGGAAATCAAAGAGACAAAAACAGAGTCACCAAAGGGGGACCCTGGAGCTTTGACAACAGCCTACTTGTCTTCGATGAGTGA

Coding sequence (CDS)

ATGGACGAGGAAGGGCAACACCCGGTTTGCTCGAAGGGATCCAAAGGTGATCAGAGTATGGCTACTGAGCATGAGAACGATGCGAGACGGGAAGGAGAATCTCAAACAAAGGAGCTAGAGGAGCAAATAGAGAAACTTAGTTTGATAGAACAAGAGAAACGAAGAGTGGTTAAGATCGAAGAGGAAGACATCAAAGAAACAAATAGAGATTTTACAATGATGAGAGCCTGCAAGATCCTATCCAATAGGATAGTCAACCAAGAGATGTTTATGAGCAAGATACCAAGAATATGGGGCCTGGAAGGGAGAGTGGTCGTAGAAAAGGCAGGAATGAATGTTTACCTTTGTAAATTTGGAAATCAAAGAGACAAAAACAGAGTCACCAAAGGGGGACCCTGGAGCTTTGACAACAGCCTACTTGTCTTCGATGAGTGA

Protein sequence

MDEEGQHPVCSKGSKGDQSMATEHENDARREGESQTKELEEQIEKLSLIEQEKRRVVKIEEEDIKETNRDFTMMRACKILSNRIVNQEMFMSKIPRIWGLEGRVVVEKAGMNVYLCKFGNQRDKNRVTKGGPWSFDNSLLVFDE
Homology
BLAST of Lag0012169 vs. NCBI nr
Match: TXG53848.1 (hypothetical protein EZV62_019104 [Acer yangbiense])

HSP 1 Score: 75.1 bits (183), Expect = 5.5e-10
Identity = 39/107 (36.45%), Postives = 65/107 (60.75%), Query Frame = 0

Query: 38  ELEEQIEKLSLIEQEKRRVVKIEEEDIKETNRDFTMMRACKILSNRIVNQEMFMSKIPRI 97
           E+ +  E LSL + E   + ++ EED +E   +  +    KILS + VN+E F+  I ++
Sbjct: 5   EIVKLYENLSLAD-EDGAIHEMPEEDQREGEVEVDLCLVGKILSGKKVNREAFIHLIEQL 64

Query: 98  WGLEGRVVVEKAGMNVYLCKFGNQRDKNRVTKGGPWSFDNSLLVFDE 145
           W   GRV +E  G+N+++  F NQ ++NR+ + GPW FD SL+V ++
Sbjct: 65  WSPFGRVAIESVGVNIFMFHFNNQEERNRIWQRGPWYFDKSLIVLEK 110

BLAST of Lag0012169 vs. NCBI nr
Match: XP_022143536.1 (uncharacterized protein LOC111013413 [Momordica charantia])

HSP 1 Score: 73.9 bits (180), Expect = 1.2e-09
Identity = 35/106 (33.02%), Postives = 65/106 (61.32%), Query Frame = 0

Query: 39  LEEQIEKLSLIEQEKRRVVKIEEEDIKETNRDFTMMRACKILSNRIVNQEMFMSKIPRIW 98
           L  Q+E+L L ++EK  +  + E++I++ ++       CK+L+ + +  E+F + +PRIW
Sbjct: 6   LSRQVERLKLTKEEKGEIFDMGEDEIEDYDKQAQFSLVCKLLTWKNIPGEVFKNMMPRIW 65

Query: 99  GLEGRVVVEKAGMNVYLCKFGNQRDKNRVTKGGPWSFDNSLLVFDE 145
            +   V +E  G N++LCKF   RDK+++   GP  FD S+++ +E
Sbjct: 66  -VNVNVKIESVGKNLFLCKFKTVRDKSKILNNGPSFFDKSMVMLEE 110

BLAST of Lag0012169 vs. NCBI nr
Match: TXG57139.1 (hypothetical protein EZV62_018452 [Acer yangbiense])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-09
Identity = 36/107 (33.64%), Postives = 64/107 (59.81%), Query Frame = 0

Query: 38  ELEEQIEKLSLIEQEKRRVVKIEEEDIKETNRDFTMMRACKILSNRIVNQEMFMSKIPRI 97
           E+ +  EKLS+ +++   + ++ EED  E   +  +    KI+S +  N+E F + I ++
Sbjct: 5   EIAKLYEKLSIADEDS-AIYEMAEEDQLEGVAEVDICLVGKIISGKKANREAFKNLIEKL 64

Query: 98  WGLEGRVVVEKAGMNVYLCKFGNQRDKNRVTKGGPWSFDNSLLVFDE 145
           W   GRV +E  G+N+++  F NQ ++NR+   GPW FDNSL+  ++
Sbjct: 65  WSQFGRVEIESVGVNIFVFHFNNQEERNRIWNRGPWYFDNSLIALEK 110

BLAST of Lag0012169 vs. NCBI nr
Match: TXG57799.1 (hypothetical protein EZV62_015628 [Acer yangbiense])

HSP 1 Score: 73.2 bits (178), Expect = 2.1e-09
Identity = 40/109 (36.70%), Postives = 66/109 (60.55%), Query Frame = 0

Query: 36  TKELEEQIEKLSLIEQEKRRVVKIEEEDIKETNRDFTMMRACKILSNRIVNQEMFMSKIP 95
           T E+ +  E+LS++++++  V +I EEDI++   D       ++LS + VN++ F   I 
Sbjct: 3   TVEISQLCERLSIVDEDE-MVHEIAEEDIQDGAEDVDKCLVGRVLSGKKVNRDAFKGLIE 62

Query: 96  RIWGLEGRVVVEKAGMNVYLCKFGNQRDKNRVTKGGPWSFDNSLLVFDE 145
           +IW   G+V VE  G N ++  F N+ D+NRV   GPW F NSL+V ++
Sbjct: 63  QIWSPFGQVEVELVGENTFMFYFINKEDRNRVWLRGPWHFGNSLIVLEK 110

BLAST of Lag0012169 vs. NCBI nr
Match: TXG70236.1 (hypothetical protein EZV62_005171 [Acer yangbiense])

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-09
Identity = 30/67 (44.78%), Postives = 47/67 (70.15%), Query Frame = 0

Query: 78  KILSNRIVNQEMFMSKIPRIWGLEGRVVVEKAGMNVYLCKFGNQRDKNRVTKGGPWSFDN 137
           KILS + VN+E FM+ + +IW ++GR+ +E    N++  +F +  DK  V  GGPWSFDN
Sbjct: 44  KILSKQQVNREAFMAFMAKIWRVKGRLNIETVSHNIFAFQFSDPGDKRMVIAGGPWSFDN 103

Query: 138 SLLVFDE 145
           +L++F+E
Sbjct: 104 ALIIFEE 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TXG53848.15.5e-1036.45hypothetical protein EZV62_019104 [Acer yangbiense][more]
XP_022143536.11.2e-0933.02uncharacterized protein LOC111013413 [Momordica charantia][more]
TXG57139.11.6e-0933.64hypothetical protein EZV62_018452 [Acer yangbiense][more]
TXG57799.12.1e-0936.70hypothetical protein EZV62_015628 [Acer yangbiense][more]
TXG70236.12.7e-0944.78hypothetical protein EZV62_005171 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 29..49
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 18..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 66..142
e-value: 2.6E-8
score: 33.5

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012169.1Lag0012169.1mRNA