Lag0012077 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012077
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Description50S ribosomal protein 5, chloroplastic
Locationchr1: 37090338 .. 37090751 (+)
RNA-Seq ExpressionLag0012077
SyntenyLag0012077
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATCTCCATTTTCGCCGTCACCGTCGCCGTCGTGTTTTCCGACGACTTCCGCCGCCCCGAGTAAGCTTCTCCTCCTCCTCTTCCTCTCCCGGGATTTCCTTCCCACCTCTTTGTTCGATGGGATCGAACGAATGTTCTTGTCTAATTCTGTATCTTCATATCTCTTTGTACTTATGCCTATGCTGCGTGTTAATGAAAATGGAGAGTTTCGTTTTCACGAACTCGAGGAACTGCGTTTATTTTGCTCGAAAGAATTGCCTTGCAGTGATTTGTTTGTTAGGCATTTTGTCAAACAGTTGGTATCCGTGTGTAGAGGCTTTCGATTTTACGTTACTCAGTTGATGTGCACTGGATTCTTGCCTGCCTGA

mRNA sequence

ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATCTCCATTTTCGCCGTCACCGTCGCCGTCGTGTTTTCCGACGACTTCCGCCGCCCCGAGTAAGCTTCTCCTCCTCCTCTTCCTCTCCCGGGATTTCCTTCCCACCTCTTTGTTCGATGGGATCGAACGAATGTTCTTGTCTAATTCTGTATCTTCATATCTCTTTGTACTTATGCCTATGCTGCGTGTTAATGAAAATGGAGAGTTTCGTTTTCACGAACTCGAGGAACTGCGTTTATTTTGCTCGAAAGAATTGCCTTGCAGTGATTTGTTTGTTAGGCATTTTGTCAAACAGTTGGTATCCGTGTGTAGAGGCTTTCGATTTTACGTTACTCAGTTGATGTGCACTGGATTCTTGCCTGCCTGA

Coding sequence (CDS)

ATGGCTTTTCTTCTCTGCTCCAATCCCCTCTCCACCTCTCTCCATTCATCTCCATTTTCGCCGTCACCGTCGCCGTCGTGTTTTCCGACGACTTCCGCCGCCCCGAGTAAGCTTCTCCTCCTCCTCTTCCTCTCCCGGGATTTCCTTCCCACCTCTTTGTTCGATGGGATCGAACGAATGTTCTTGTCTAATTCTGTATCTTCATATCTCTTTGTACTTATGCCTATGCTGCGTGTTAATGAAAATGGAGAGTTTCGTTTTCACGAACTCGAGGAACTGCGTTTATTTTGCTCGAAAGAATTGCCTTGCAGTGATTTGTTTGTTAGGCATTTTGTCAAACAGTTGGTATCCGTGTGTAGAGGCTTTCGATTTTACGTTACTCAGTTGATGTGCACTGGATTCTTGCCTGCCTGA

Protein sequence

MAFLLCSNPLSTSLHSSPFSPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGIERMFLSNSVSSYLFVLMPMLRVNENGEFRFHELEELRLFCSKELPCSDLFVRHFVKQLVSVCRGFRFYVTQLMCTGFLPA
Homology
[Close]
BLAST of Lag0012077 vs. NCBI nr
Match: XP_022154476.1 (50S ribosomal protein 5, chloroplastic [Momordica charantia])

HSP 1 Score: 68.6 bits (166), Expect = 4.9e-08
Identity = 44/86 (51.16%), Postives = 58/86 (67.44%), Query Frame = 0 

Query: 1  MAFLLCSNPLSTSLHSSPF--SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGIE 60
          MAFLLCSNPLSTSL+SSPF  SPSPSPSCFPTTSAAPS +LL+  +   F P  +F+G+ 
Sbjct: 1  MAFLLCSNPLSTSLYSSPFSPSPSPSPSCFPTTSAAPSSILLMRPVG--FQP-KIFNGVR 60

Query: 61 RMFLSNSVSSYLFVLMPMLRVNENGE 85
             +S   ++   ++     ++  GE
Sbjct: 61 LRNVSFVENTASLIVKATSEIDGTGE 83

[Close]
BLAST of Lag0012077 vs. NCBI nr
Match: XP_038881132.1 (50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881134.1 50S ribosomal protein 5, chloroplastic [Benincasa hispida])

HSP 1 Score: 64.3 bits (155), Expect = 9.3e-07
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 0 

Query: 2  AFLLCSNPLSTSLHSSPFS--PSPSPSCFPTTSAAPSKLLLL 42
          +FLLCSNPLSTSLHS PFS  PSPSPSCFP TSAAPS +LL+
Sbjct: 3  SFLLCSNPLSTSLHSFPFSPPPSPSPSCFPATSAAPSPMLLM 44

[Close]
BLAST of Lag0012077 vs. NCBI nr
Match: KAG6603426.1 (hypothetical protein SDJN03_04035, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 1.1e-04
Identity = 44/98 (44.90%), Postives = 57/98 (58.16%), Query Frame = 0 

Query: 1  MAFLLCSNPLSTSLHSSPF--SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDGI- 60
          MAFLLCSNPLS SLHSS F  SPSPSPSCFP   AA + +LL+      F P   F+G+ 
Sbjct: 1  MAFLLCSNPLSISLHSSTFSPSPSPSPSCFPANFAALNSMLLM--KPTGFQPKH-FNGVR 60

Query: 61 --ERMFLSNSVSSYLFVLMPMLRVNENGEFRFHELEEL 94
               F+ N+VS   F++     ++  GE   +E + L
Sbjct: 61 LRNPSFVENTVS---FIVKAASEIDATGETDSNEPKPL 92

[Close]
BLAST of Lag0012077 vs. NCBI nr
Match: XP_022949869.1 (50S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 56.6 bits (135), Expect = 1.9e-04
Identity = 42/91 (46.15%), Postives = 53/91 (58.24%), Query Frame = 0 

Query: 1  MAFLLCSNPLSTSLHSSPF----SPSPSPSCFPTTSAAPSKLLLLLFLSRDFLPTSLFDG 60
          MAFLLCSNPLS SLHSS F    SPSPSPSCFP   AA + +LL+      F P   F+G
Sbjct: 1  MAFLLCSNPLSISLHSSTFSPSPSPSPSPSCFPANFAALNSMLLM--KPTGFQPKH-FNG 60

Query: 61 I---ERMFLSNSVSSYLFVLMPMLRVNENGE 85
          +      F+ N+VS   F++     ++  GE
Sbjct: 61 VRLRNPSFVENTVS---FIVKAASEIDATGE 85

[Close]
BLAST of Lag0012077 vs. NCBI nr
Match: KAG7027445.1 (50S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 56.2 bits (134), Expect = 2.5e-04
Identity = 31/41 (75.61%), Postives = 34/41 (82.93%), Query Frame = 0 

Query: 1  MAFLLCSNPLSTSLHSSPFSPSPSPSCFPTTSAAPSKLLLL 42
          MAFLLCSNP+STSLHSS F   PSPSCFP TSAA S +LL+
Sbjct: 1  MAFLLCSNPVSTSLHSSLF--PPSPSCFPMTSAAQSSMLLM 39

The following BLAST results are available for this feature:
BLAST of Lag0012077 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154476.14.9e-0851.1650S ribosomal protein 5, chloroplastic [Momordica charantia][more]
XP_038881132.19.3e-0780.9550S ribosomal protein 5, chloroplastic [Benincasa hispida] >XP_038881133.1 50S r... [more]
KAG6603426.11.1e-0444.90hypothetical protein SDJN03_04035, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022949869.11.9e-0446.1550S ribosomal protein 5 alpha, chloroplastic-like [Cucurbita moschata][more]
KAG7027445.12.5e-0475.6150S ribosomal protein 5, chloroplastic [Cucurbita argyrosperma subsp. argyrosper... [more]
BLAST of Lag0012077 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012077.1Lag0012077.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
cellular_component GO:0005840 ribosome