Lag0012072 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0012072
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Reverse transcriptase domain-containing protein
Location	chr1: 37064285 .. 37067461 (+)
RNA-Seq Expression	Lag0012072
Synteny	Lag0012072

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTAATAGAAGACCTAGAGGTAAGATTCTAGCGACTAGGGGATTAAGACAAGACGACCCACTTTCCCCCTCTCTTTCCACCATTGTGAGAGATGCTCTAAGCCAATCGATTCAATATTGCTTGGAGAAAAACATCCTAAAAGATCTTACTGTGAGCAGACACAAGGTGAAGGTAACTATCCATCAATACGCGGATGATACGATGGTCTTTTGCTCAAATGAGGAAGCAATCCTAGACAAATGGTGGGAGATTTTGAATTTATTCATAGGCTGGCTCTAGTATTTCAACTTGAAATTGGCTAAAACCTCAATAATAGCTAGGGATCAGTATGAGCAATGAGCAATGAAGAAGTGGGAGGATGGGCGAATAAATTTGGTTGCAAGATAGAATCTTTCCCAATCAACTATCTTGCATTTCCCTTAGGAGGAAATCATCACAGAATAGCTTCACTTTGAGGAGCTTGAAATCATTCAATTGGGGACTCATATGGATAGGATTCTATGGAAGTTGGAGGGCATGGGTGCTTGCTTTCACCAGCAAGTCTATGTTTAGAACTATGAATTTTGTAACTTTCAGATTAAACAAAACTACACCTGACCTGATCTGGAAGCACAATTGCCCGAAGAAAGTAAAAATTTTCCTTTGGTCCGTGGCGTACCGAAGCTTGAACACGGATGATAGGGTGCAAAGAAAATTTAACGAGTGGACCCTCTCTCCCTCGGCTTGTAGACTATGCCTTAAAGAAGGAGAGAACATAGATCATATTTTCCTTCGTTGCGACTTTGCTCAAAAGGTCCTGAATTATGTAGCGAGCTTGTTAGGTATATCCTTTTGTGTGCTCCTAAAAGAGTAGATGATTGGCTCACTGAAGGGCTTAATGCTTGGAATCTGAAGAAAGAGGCGAAAGTGGTAGCAAGTTGTGCTTTTAGGACGACTATTTATTGTTGCTGTTATGGAAGGAAAGAATCGCGAGAACCTTTGAAGATAAGTCTATTGATTTCGTCCTCTTGATGGATTACTTTATACATAAAGTTCTTTTGTAATTACAGCTTACTTATGATTATTAACGATCGACAGGTCCTTTTGAGGTAGTTTTTGGGAGGGGTGACCTCCATCCCAACCCCTAGGTTGTTATCTTCTTTTTTGTGATAATATATCTCCCTTTTGATGTTTCTTATCAAAAAGAAAAGAAAAAAAAAAAAAAAAAAAAAAGAGAGAAGGTTTGATGTTCTATTAGACAATTTTTAATTTTATGGCTAATAGATCTAGTAATTTAAAAAAAAAAAAAAATCGAATATGTGGGGATCAATTAGAGGCAAAATTGAACTAAGTTCAAGAATCTATAAGACACATAACTTGTTTCGAGAATAATTGGAGATTTTAAAGTTTCTAAAAATTTATTAGATACAAACCTGAAATTTTATGTACTAACCTCGTAACCTGATTAATATTATTTATGAGTTGAATTTCATAAAGTGAAAGGAGGAAGTAATTTACAATGTAGAGGGTGGCTATTATAAAATTACTAAAAGGTTTTCATTAAATTATCATTTTTTTTTAAAAAAAAAACATTAAATTATCATTTTTTTTACTCAATCTGTTAAGTCAATATTTGAATAATAATAATAATAATATTCTTCTCAAATAATAATAATAATGTTAATCGTAGTGGATTTGAACAATAGAGTTAATGTCATAGTTCTTAGCATCAAAATTGAATGCTCAAGATTGTAATTGATTTTTTTTTTAAGTTGTAAATTCATCTAACAATAATCTCCTAGTTAGAGTTTAGTCCGCCAAAGCGAGCATAATTTAGCGATAATTGACATTGTACCATCGATCAAGAGATCAGAGATTCGAATCCTCCACTCCCAAATGTTGATGTACTCAAAAAAATAGTTGAAATTTCAAAAGTAACATATTTGGTTGGTCTTTGAACAAAAACAAAAATTCCAACTCATTCCAAAAACACACATCAACAAAGACTAATAATATCAATCGTGTTAACACTCTATTAGGTCAACTAAAAGTCAACTCAACTTCGAGATGAATTAGAAACCAATTTCGAACTTCATGGACTAATTAGAAATGAAATTCAAAACTCAAGACTAAATTTGCTACTTTCGAAATTTCAAAAATCAAGTAAGAACTCAATTCAAGTCTTCTCAAAAAAAAAAAAAAAAAAAAAACTCAATTCAAGTGTCAATGATAAAAAAATGTTAGTTTTAAAAATTTTAGAACCAAATAAAGGGGGTAATTACAAAATTGCCCCCTCCAAGTTTTTTGTTTAAAATTTTAACCCCCTATAAGAAAAAAGTTTTTTTTGACCCCCTTGATGATGAATATGATGTAAGCATGCATAGCAATTTACTTTTATACCCTCAAGTCATTAAAACCCACTAAAATTAATTATTTCACCAACTTTTCACCCACCTTCACCAACTTCCAATACCATAATTACCATACATTACTCTTAACCCTTCATTAAACTCATTTTGAAAAAAAAAACATCTTTCAATCACCCAACCTCTCATCTTCTCTCTTGAATCCACAACAAGTTGTTCACTAAAGTGCATTTGATCCACAACAAGTGCTCATTTTTTAAAGAAGGTACGTTACTTTTGATTATTCTATCGTATTTGTTTAAAAAATATCCAATAGAATGTCGTTGAAATGGTTTTTCGTCAATCTTGTGTCGAACCCAGTCCAATCTCGGCCGGACAGGTTGAAAATCCCGGCCGAACCACCCTTTTTTCCGGCCGGGATTCATACATTTTGAAGACCGGCCGAGCCGATATTTTCCCGGCCGGACCACGTTTTTCCCGACCGAACCGTCACCGAGATTTGGCCGAGAACAGTGGTTTTTTTTTGTTTTTTTGTTTGGTTTTTAAATTTTTTTAAGTTTTTTGAATTTCTGGTGGTTGCATACATTTGTTTATATATTCTTTTGTATTTGTGCAGATGCCTCGTGTTTGGGTATGTTTTGGTGGTGTGTGGAAGGAGAGTGAAAAGGAGTATGATGGTGGAGAGGTGAGGGCCTTAGACGTGGATGTGGGAATTTCTTATAACGAGTTCTTAGGTCAAGTGTATGAAATAAGTAGTATAAGTCCGAATGATAACGACATTGTTTTGAGGTGTCTGCTTGAACTGAGGTCTAAATCTCCGCTTTTGTGA

mRNA sequence

ATGATTAATAGAAGACCTAGAGGTAAGATTCTAGCGACTAGGGGATTAAGACAAGACGACCCACTTTCCCCCTCTCTTTCCACCATTGTGAGAGATGCTCTAAGCCAATCGATTCAATATTGCTTGGAGAAAAACATCCTAAAAGATCTTACTGTGAGCAGACACAAGGTGAAGGTAACTATCCATCAATACGCGGATGATACGATGGTCTTTTGCTCAAATGAGGAAGCAATCCTAGACAAATGGAGGAAATCATCACAGAATAGCTTCACTTTGAGGAGCTTGAAATCATTCAATTGGGGACTCATATGGATAGGATTCTATGGAAGTTGGAGGGCATGGGTGCTTGCTTTCACCAGCAAGTCTATGTTTAGAACTATGAATTTTGTAACTTTCAGATTAAACAAAACTACACCTGACCTGATCTGGAAGCACAATTGCCCGAAGAAAGTAAAAATTTTCCTTTGGTCCGTGGCGTACCGAAGCTTGAACACGGATGATAGGGTGCAAAGAAAATTTAACGAGTGGACCCTCTCTCCCTCGGCTTGTAGACTATGCCTTAAAGAAGGAGAGAACATAGATCATATTTTCCTTCGTTGCGACTTTGCTCAAAAGATGCCTCGTGTTTGGGTATGTTTTGGTGGTGTGTGGAAGGAGAGTGAAAAGGAGTATGATGGTGGAGAGGTGAGGGCCTTAGACGTGGATGTGGGAATTTCTTATAACGAGTTCTTAGGTCAAGTGTATGAAATAAGTAGTATAAGTCCGAATGATAACGACATTGTTTTGAGGTGTCTGCTTGAACTGAGGTCTAAATCTCCGCTTTTGTGA

Coding sequence (CDS)

ATGATTAATAGAAGACCTAGAGGTAAGATTCTAGCGACTAGGGGATTAAGACAAGACGACCCACTTTCCCCCTCTCTTTCCACCATTGTGAGAGATGCTCTAAGCCAATCGATTCAATATTGCTTGGAGAAAAACATCCTAAAAGATCTTACTGTGAGCAGACACAAGGTGAAGGTAACTATCCATCAATACGCGGATGATACGATGGTCTTTTGCTCAAATGAGGAAGCAATCCTAGACAAATGGAGGAAATCATCACAGAATAGCTTCACTTTGAGGAGCTTGAAATCATTCAATTGGGGACTCATATGGATAGGATTCTATGGAAGTTGGAGGGCATGGGTGCTTGCTTTCACCAGCAAGTCTATGTTTAGAACTATGAATTTTGTAACTTTCAGATTAAACAAAACTACACCTGACCTGATCTGGAAGCACAATTGCCCGAAGAAAGTAAAAATTTTCCTTTGGTCCGTGGCGTACCGAAGCTTGAACACGGATGATAGGGTGCAAAGAAAATTTAACGAGTGGACCCTCTCTCCCTCGGCTTGTAGACTATGCCTTAAAGAAGGAGAGAACATAGATCATATTTTCCTTCGTTGCGACTTTGCTCAAAAGATGCCTCGTGTTTGGGTATGTTTTGGTGGTGTGTGGAAGGAGAGTGAAAAGGAGTATGATGGTGGAGAGGTGAGGGCCTTAGACGTGGATGTGGGAATTTCTTATAACGAGTTCTTAGGTCAAGTGTATGAAATAAGTAGTATAAGTCCGAATGATAACGACATTGTTTTGAGGTGTCTGCTTGAACTGAGGTCTAAATCTCCGCTTTTGTGA

Protein sequence

MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVTIHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNWGLIWIGFYGSWRAWVLAFTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLSPSACRLCLKEGENIDHIFLRCDFAQKMPRVWVCFGGVWKESEKEYDGGEVRALDVDVGISYNEFLGQVYEISSISPNDNDIVLRCLLELRSKSPLL

Homology

[Close]

BLAST of Lag0012072 vs. NCBI nr
Match: CAN72845.1 (hypothetical protein VITISV_009108 [Vitis vinifera])

HSP 1 Score: 105.9 bits (263), Expect = 5.6e-19
Identity = 68/201 (33.83%), Postives = 101/201 (50.25%), Query Frame = 0


Query: 1   MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVT 60
           ++N   +G + A+RGLRQ DPLSP L T+V   LS+ +    E+N+L+   V R++ +V+
Sbjct: 232 LVNGSVKGWVKASRGLRQGDPLSPFLFTLVAYVLSRMLLRAEERNMLEGFRVGRNRTRVS 291

Query: 61  IHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNWGLIWIGFYGSWRAWVLAFTS 120
             Q+ADDT+ F +  E  L           TL+SL      L+  G              
Sbjct: 292 HLQFADDTIFFSNTREEDLQ----------TLKSL------LLVFGHISG---------L 351

Query: 121 KSMFRTMNFVTFRLNKTTPD-LIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLS 180
           K      N     L++  P   +W    P KVK F+W VA++ +NT+D +Q +     LS
Sbjct: 352 KVNLDKSNIYGINLDQVFPSKFVWNSQVPFKVKSFVWLVAHKKVNTNDMLQVRRPYKALS 407

Query: 181 PSACRLCLKEGENIDHIFLRC 201
           P    LC+K GE+ DH+FL C
Sbjct: 412 PDIYILCMKHGESADHLFLHC 407

[Close]

BLAST of Lag0012072 vs. NCBI nr
Match: TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])

HSP 1 Score: 103.2 bits (256), Expect = 3.6e-18
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 118 FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWT 177
           F++K +F  M     + N +T +LIWK    KKVK FLWS+AYRSLN  +++QRKF   +
Sbjct: 207 FSTKFIFSKMTMGAAKANFSTVNLIWKLKISKKVKFFLWSLAYRSLNIQNKLQRKFPNGS 266

Query: 178 LSPSACRLCLKEGENIDHIFLRCDFAQK 206
           LSPS C LCLKE E  DH+FL CDFA K
Sbjct: 267 LSPSICYLCLKEAEAFDHLFLHCDFAFK 294

[Close]

BLAST of Lag0012072 vs. NCBI nr
Match: RVW16135.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 95.9 bits (237), Expect = 5.8e-16
Identity = 70/283 (24.73%), Postives = 115/283 (40.64%), Query Frame = 0


Query: 1   MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVT 60
           ++N   +G + A+RGLRQ DPLS  L T+V D LS+ +    E+N+++   V R++ +V+
Sbjct: 86  LVNGSAKGWVKASRGLRQGDPLSSFLFTLVADVLSRMLMRAEERNMMEGFRVGRNRTRVS 145

Query: 61  IHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNWGLIWIGF------------- 120
             Q+ DDT+ F ++ E  L   +        +  LK+  W ++++G              
Sbjct: 146 HLQFVDDTIFFSNSREEELQTLKSLLLVFGHISGLKASGWPILYLGLPLGGNPKACGFWI 205

Query: 121 ---YG--------------------------SWR------AWVLA--------------- 180
              +G                          SWR       W+ +               
Sbjct: 206 QWGWGRQKGSFSEVGCCVQTKTIGGLGLGNISWRNLALLGKWLWSKMVTSLSLEGYCLSL 265

Query: 181 --------------------FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWS 201
                               F+ KS F  ++  +          +W    P KVK F+W 
Sbjct: 266 SGVFFDYSMPDYGHYPLQGFFSVKSFFLALSQSSGSSQNFPSKFVWNSQVPFKVKCFVWL 325

[Close]

BLAST of Lag0012072 vs. NCBI nr
Match: CAN62679.1 (hypothetical protein VITISV_012001 [Vitis vinifera])

HSP 1 Score: 94.0 bits (232), Expect = 2.2e-15
Identity = 78/303 (25.74%), Postives = 117/303 (38.61%), Query Frame = 0


Query: 1    MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVT 60
            ++N   +G + A+RGLRQ DPLSP L T+V D LS+ +    E+N+L+   V +++ +VT
Sbjct: 813  LVNGNAKGWVKASRGLRQSDPLSPFLFTLVADVLSRMLLRAEERNLLEGFRVXKNRTRVT 872

Query: 61   IHQYADDTMVFCSNEEAILDKWR------------------------------------- 120
              Q+ADDT+ F +  E  L   +                                     
Sbjct: 873  HLQFADDTIFFSNTREEELQTLKSLLLVFGHISGLKVNLDKSNINGINLDQNHLSRLAEM 932

Query: 121  ---KSSQNSFTLR-----------------------------------SLKSFNW----- 180
               K+S N   +R                                   S + F+W     
Sbjct: 933  LDCKASGNGKRIRFWEDLWWGDQPLGTQFPRLFRVVLDKNIHISSVHGSTRPFSWNFNFR 992

Query: 181  -------------------GLIWIGFYGSWRAWVLA----FTSKSMFRTMNFVTFRLNKT 201
                               GL       + R W L+    F+ KS F T++  +      
Sbjct: 993  RKLSDSEIEDLEGLMRSLDGLHLSPSVSNARFWPLSSSRLFSVKSFFLTLSQFSGSPQVF 1052

[Close]

BLAST of Lag0012072 vs. NCBI nr
Match: CAN69687.1 (hypothetical protein VITISV_026773 [Vitis vinifera])

HSP 1 Score: 92.0 bits (227), Expect = 8.3e-15
Identity = 66/211 (31.28%), Postives = 102/211 (48.34%), Query Frame = 0


Query: 1   MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVT 60
           ++N   +G + A+R LRQ DPLSP L T+V D LS+ +    E+N+L+   V R++ +  
Sbjct: 378 LVNGSAKGWVKASRXLRQGDPLSPFLFTLVADVLSRMLLRAEERNMLEGFRVGRNRTRTL 437

Query: 61  I-------HQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNWGLIWIG--FYGSW 120
                   H       +  SN   I       S+ + TL   K   W ++++G    G+ 
Sbjct: 438 KSLLLAFGHISGLKVNLDKSNIYGINLDQAHISRLAETL-ECKVSGWPILYLGLPLGGNP 497

Query: 121 RAWVLAFTSKSMF--RTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRV 180
           RA    F     F   + +F    +       +W    P KV+ F+W VA++ +NT+D +
Sbjct: 498 RAGNRGFGFWEYFSEESRSFREMAVEVFPSKFVWNSQVPFKVQSFVWLVAHKKVNTNDML 557

Query: 181 QRKFNEWTLSPSACRLCLKEGENIDHIFLRC 201
           Q +     LSP  C LC+K GE+ DHIFL C
Sbjct: 558 QVRRPYKALSPDICILCMKHGESADHIFLHC 587

[Close]

BLAST of Lag0012072 vs. ExPASy Swiss-Prot
Match: P92555 (Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 GN=AtMg01250 PE=4 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 9.0e-04
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 1  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVT 60
          +IN  P+G +  +RGLRQ DPLSP L  +  + LS   +   E+  L  + VS +  ++ 
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 61 IHQYADDT 69
             +ADDT
Sbjct: 73 HLLFADDT 80

[Close]

BLAST of Lag0012072 vs. ExPASy TrEMBL
Match: A5BYD5 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_009108 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.7e-19
Identity = 68/201 (33.83%), Postives = 101/201 (50.25%), Query Frame = 0


Query: 1   MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVT 60
           ++N   +G + A+RGLRQ DPLSP L T+V   LS+ +    E+N+L+   V R++ +V+
Sbjct: 232 LVNGSVKGWVKASRGLRQGDPLSPFLFTLVAYVLSRMLLRAEERNMLEGFRVGRNRTRVS 291

Query: 61  IHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNWGLIWIGFYGSWRAWVLAFTS 120
             Q+ADDT+ F +  E  L           TL+SL      L+  G              
Sbjct: 292 HLQFADDTIFFSNTREEDLQ----------TLKSL------LLVFGHISG---------L 351

Query: 121 KSMFRTMNFVTFRLNKTTPD-LIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWTLS 180
           K      N     L++  P   +W    P KVK F+W VA++ +NT+D +Q +     LS
Sbjct: 352 KVNLDKSNIYGINLDQVFPSKFVWNSQVPFKVKSFVWLVAHKKVNTNDMLQVRRPYKALS 407

Query: 181 PSACRLCLKEGENIDHIFLRC 201
           P    LC+K GE+ DH+FL C
Sbjct: 412 PDIYILCMKHGESADHLFLHC 407

[Close]

BLAST of Lag0012072 vs. ExPASy TrEMBL
Match: A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 1.8e-18
Identity = 48/88 (54.55%), Postives = 60/88 (68.18%), Query Frame = 0


Query: 118 FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRVQRKFNEWT 177
           F++K +F  M     + N +T +LIWK    KKVK FLWS+AYRSLN  +++QRKF   +
Sbjct: 207 FSTKFIFSKMTMGAAKANFSTVNLIWKLKISKKVKFFLWSLAYRSLNIQNKLQRKFPNGS 266

Query: 178 LSPSACRLCLKEGENIDHIFLRCDFAQK 206
           LSPS C LCLKE E  DH+FL CDFA K
Sbjct: 267 LSPSICYLCLKEAEAFDHLFLHCDFAFK 294

[Close]

BLAST of Lag0012072 vs. ExPASy TrEMBL
Match: A0A438BYP3 (Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_20 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 2.8e-16
Identity = 70/283 (24.73%), Postives = 115/283 (40.64%), Query Frame = 0


Query: 1   MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVT 60
           ++N   +G + A+RGLRQ DPLS  L T+V D LS+ +    E+N+++   V R++ +V+
Sbjct: 86  LVNGSAKGWVKASRGLRQGDPLSSFLFTLVADVLSRMLMRAEERNMMEGFRVGRNRTRVS 145

Query: 61  IHQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNWGLIWIGF------------- 120
             Q+ DDT+ F ++ E  L   +        +  LK+  W ++++G              
Sbjct: 146 HLQFVDDTIFFSNSREEELQTLKSLLLVFGHISGLKASGWPILYLGLPLGGNPKACGFWI 205

Query: 121 ---YG--------------------------SWR------AWVLA--------------- 180
              +G                          SWR       W+ +               
Sbjct: 206 QWGWGRQKGSFSEVGCCVQTKTIGGLGLGNISWRNLALLGKWLWSKMVTSLSLEGYCLSL 265

Query: 181 --------------------FTSKSMFRTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWS 201
                               F+ KS F  ++  +          +W    P KVK F+W 
Sbjct: 266 SGVFFDYSMPDYGHYPLQGFFSVKSFFLALSQSSGSSQNFPSKFVWNSQVPFKVKCFVWL 325

[Close]

BLAST of Lag0012072 vs. ExPASy TrEMBL
Match: A5APK6 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_012001 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.1e-15
Identity = 78/303 (25.74%), Postives = 117/303 (38.61%), Query Frame = 0


Query: 1    MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVT 60
            ++N   +G + A+RGLRQ DPLSP L T+V D LS+ +    E+N+L+   V +++ +VT
Sbjct: 813  LVNGNAKGWVKASRGLRQSDPLSPFLFTLVADVLSRMLLRAEERNLLEGFRVXKNRTRVT 872

Query: 61   IHQYADDTMVFCSNEEAILDKWR------------------------------------- 120
              Q+ADDT+ F +  E  L   +                                     
Sbjct: 873  HLQFADDTIFFSNTREEELQTLKSLLLVFGHISGLKVNLDKSNINGINLDQNHLSRLAEM 932

Query: 121  ---KSSQNSFTLR-----------------------------------SLKSFNW----- 180
               K+S N   +R                                   S + F+W     
Sbjct: 933  LDCKASGNGKRIRFWEDLWWGDQPLGTQFPRLFRVVLDKNIHISSVHGSTRPFSWNFNFR 992

Query: 181  -------------------GLIWIGFYGSWRAWVLA----FTSKSMFRTMNFVTFRLNKT 201
                               GL       + R W L+    F+ KS F T++  +      
Sbjct: 993  RKLSDSEIEDLEGLMRSLDGLHLSPSVSNARFWPLSSSRLFSVKSFFLTLSQFSGSPQVF 1052

[Close]

BLAST of Lag0012072 vs. ExPASy TrEMBL
Match: A5B4S4 (Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_026773 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 4.0e-15
Identity = 66/211 (31.28%), Postives = 102/211 (48.34%), Query Frame = 0


Query: 1   MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVT 60
           ++N   +G + A+R LRQ DPLSP L T+V D LS+ +    E+N+L+   V R++ +  
Sbjct: 378 LVNGSAKGWVKASRXLRQGDPLSPFLFTLVADVLSRMLLRAEERNMLEGFRVGRNRTRTL 437

Query: 61  I-------HQYADDTMVFCSNEEAILDKWRKSSQNSFTLRSLKSFNWGLIWIG--FYGSW 120
                   H       +  SN   I       S+ + TL   K   W ++++G    G+ 
Sbjct: 438 KSLLLAFGHISGLKVNLDKSNIYGINLDQAHISRLAETL-ECKVSGWPILYLGLPLGGNP 497

Query: 121 RAWVLAFTSKSMF--RTMNFVTFRLNKTTPDLIWKHNCPKKVKIFLWSVAYRSLNTDDRV 180
           RA    F     F   + +F    +       +W    P KV+ F+W VA++ +NT+D +
Sbjct: 498 RAGNRGFGFWEYFSEESRSFREMAVEVFPSKFVWNSQVPFKVQSFVWLVAHKKVNTNDML 557

Query: 181 QRKFNEWTLSPSACRLCLKEGENIDHIFLRC 201
           Q +     LSP  C LC+K GE+ DHIFL C
Sbjct: 558 QVRRPYKALSPDICILCMKHGESADHIFLHC 587

[Close]

BLAST of Lag0012072 vs. TAIR 10
Match: ATMG01250.1 (RNA-directed DNA polymerase (reverse transcriptase) )

HSP 1 Score: 45.8 bits (107), Expect = 6.4e-05
Identity = 25/68 (36.76%), Postives = 38/68 (55.88%), Query Frame = 0


Query: 1  MINRRPRGKILATRGLRQDDPLSPSLSTIVRDALSQSIQYCLEKNILKDLTVSRHKVKVT 60
          +IN  P+G +  +RGLRQ DPLSP L  +  + LS   +   E+  L  + VS +  ++ 
Sbjct: 13 IINGAPQGLVTPSRGLRQGDPLSPYLFILCTEVLSGLCRRAQEQGRLPGIRVSNNSPRIN 72

Query: 61 IHQYADDT 69
             +ADDT
Sbjct: 73 HLLFADDT 80

The following BLAST results are available for this feature:

BLAST of Lag0012072 vs. NCBI nr


Match Name	E-value	Identity	Description
CAN72845.1	5.6e-19	33.83	hypothetical protein VITISV_009108 [Vitis vinifera]	[more]
TYK31299.1	3.6e-18	54.55	protein FAM91A1 [Cucumis melo var. makuwa]	[more]
RVW16135.1	5.8e-16	24.73	putative mitochondrial protein [Vitis vinifera]	[more]
CAN62679.1	2.2e-15	25.74	hypothetical protein VITISV_012001 [Vitis vinifera]	[more]
CAN69687.1	8.3e-15	31.28	hypothetical protein VITISV_026773 [Vitis vinifera]	[more]

BLAST of Lag0012072 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92555	9.0e-04	36.76	Uncharacterized mitochondrial protein AtMg01250 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Lag0012072 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A5BYD5	2.7e-19	33.83	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A0A5D3E632	1.8e-18	54.55	Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059...	[more]
A0A438BYP3	2.8e-16	24.73	Putative mitochondrial protein OS=Vitis vinifera OX=29760 GN=AtMg01250_20 PE=4 S...	[more]
A5APK6	1.1e-15	25.74	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]
A5B4S4	4.0e-15	31.28	Reverse transcriptase domain-containing protein OS=Vitis vinifera OX=29760 GN=VI...	[more]

BLAST of Lag0012072 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01250.1	6.4e-05	36.76	RNA-directed DNA polymerase (reverse transcriptase)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 8..79 e-value: 1.5E-7 score: 31.2
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 118..205 e-value: 1.8E-15 score: 57.4
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 139..212
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 139..212

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0012072.1	Lag0012072.1	mRNA