Lag0012010 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0012010
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr1: 36273526 .. 36276022 (-)
RNA-Seq ExpressionLag0012010
SyntenyLag0012010
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAATTCAGGTCTATCAATTTGTTCAATGTGACTTACAAAATTGTGACAAAAGTAATTACCAACAGACTCAAAAAAGTCCTAGACTCCATTATCTCTCAAACTCAATCAACTTTCGTGTCGGGGAGATTGATAACAGATAACGTGGTGGTAGGTTTCGAGTGTATTCATGCCCTTAATAACAGAAGATCGGATAAAAGTGGGATCGTCGCTTTGAAGTTCGATATGAGCAAGACGTACGACAAGGTGGGGTGGGACTATATCAGACAAATGTTGAACTTTTGAATGAAATACCTACTCGTATGAACAAGAAGACCTGACATTGATTTGGAGCTCAAAAGAAGAAGTTTTTTCTATCCATTCTTGTTGCCCAAAATAGCCAACGAGATTAGAAACCCGACTCGAGCAGCGCCAAAAAGTTCGTTACTTTCTCTTGATCATAGGTTCTCTACATCTAATATACATACTTCATACACAGAGACAGACAACATAATTTTTTTCTGCTACTTTAATGAAATGAAGCCTTGTGAACAAAGTTTCTTTCATGTTCAAACAATTCTCTCATTGTATACAGACTTCTGTTTATGGTAACTTAAAATCTATTACTTAAACTTTGACTGAAATTTTGATATGTTTTCAAGGATTTCCATTTGTTGGACAATTTTGGACTTGTTACTTTAGTGTAAAATTATAAGTATGAATAATTAAACATTTTCTACGCATTTGTAGCGTCAATTTTTTTTTTTTTTTTTTTTTTTTGAGTACATCAATATTTGGGGTGGAGGGATTTGAACCTCTGACCTATTTGTCGAAGGTATATGTCATTTACCGTTGAACTAAGCTCGCTTTGGTAGGAAGTTTTTTGGTTTTAGTATCAATTTTCTACCTTGTTTTCAAAAACCAAGTCCAATTTTGGGAAGAAAAAAAAAGTAGTTTTCAAAAACTTGTTTTTGTTTTTAAAATTTGGCTAGGAATTCAAATGTAACCTTAACTAGGATGAAAGTCATGGTAGGAAATTTAGGAGAAAACAAGCATAATTTTTTAAAACGACCAAAAACCAAAAACCAAAAACCAAATGGTTATCAAACGAGACCTAAGTTGTTTGTTTGATGAACAATGGTTAAAAGACAAGAGTTTTTTTAACTTCCCAAGTATTGAATTGATGTTATTGAGTTCGTTTAATATCTCCATTGAAATTTACCAAGTTTGAAAGTTGTTAGGAACATGAACAATTATGTCCCATGTCATTTAGTAGATGAGAAGATTTATGGTATATAAGCAAAGACGAGTTAATTACACAACATTCTCATTAGTGTGAAATATTTTAGTAAACTATTTTTGTTTTTTTCTCTTTTGTTGAGACTAAACATTCATCTCCTTCCAACTATGTAATCTCCATTTTTTCCTACCTTCATAAGTTTTATATATCGTGTTAATGCAATCATAGTTTAGACTTTAGTCGATAAGATATTTACTACCTTACTTGGGATCTTCAAAAAAAATTATTATCCTACTTCGAAAAATTATTTAATGTGGTCGTTACAGTGCAGTTGTCTCGCATTCTCTAAGTAGTTGGACATTATTAAACTTAAATTTTAATTTCTCTTCTCGGGATTGAAGGTTTAATCCTCTATCTCACACTTGCTAAATTAAAAGTAAGTCATGTGGTTCACACACACACACGCACACGCACACGCACACGCACACGCGAAAAACACACACACACACACGGAAAAAAATACACTTTTAGTCCCTGAAGTTTGAGTTAGGTTTTATTTTGGTCATTCCATCCATTTTTCTGTTATATACTAACGGATTGATGACGTGACATCATTTTTTATTAAACAAAAATTTCTTTTTTTAATTTTTAGTCCCTGAGGTGTGGGCTAAGTTTCATTTTGGTCATTGAGTTTTCAAACTCAACAATTTAGCCCCTAAGATTTGGTTTCAGTTTCATTTGGTCCCTCCATCCATTTTTCCGTTAAAAACTAACGGGTGGATGACGTGAAACCATTTTTTATTTTATAAAATTATTTTTAATTTTTTTAATTAAAAATATATTAAAATAATAAAAATATTATTATTTTAAATTTTGTTATTTCTTCCTTATTTCTTCCCCCTCTCTTTTCTTCTTCTTCTTCAACACCTTCAAGACTTCTTCTTCTTCTTCTTCACATGGCCGACGGTCGACCGCCGCCGACAACTTTTTTTCTTTCTTTCTTTCTCCTTGTCTTCTATTCTCTTCTTCCTCTTTTTTCTCTTCTTCTCCAACTTTTCTTTTTCTTAAAAAAAAAAACATAACCGAGCTCTTACCTGCGCTGCTTGTATCTTATAGCTAACTAGAGAACTTGACCACAAGTCCGATGCAAGACAATCCGGTGGCTATTTGAGCAATTCGCTTGAAGTTGTGTCGGAGTCGCTGTTCGAGAACTCGAGATCTAAAGCAATAGCGTCTGAAGTAGTTTCGGATCGAGATCTAAAGTTGTTCGCTTGA

mRNA sequence

ATGGATGAATTCAGGTCTATCAATTTGTTCAATGTGACTTACAAAATTGTGACAAAAGTAATTACCAACAGACTCAAAAAAGTCCTAGACTCCATTATCTCTCAAACTCAATCAACTTTCGTGTCGGGGAGATTGATAACAGATAACGTGGTGGTAGGTTTCGAGTGTATTCATGCCCTTAATAACAGAAGATCGGATAAAAGTGGGATCGTCGCTTTGAAGTTCGATATGAGCAAGACGTACGACAAGCTAACTAGAGAACTTGACCACAAGTCCGATGCAAGACAATCCGGTGGCTATTTGAGCAATTCGCTTGAAGTTGTGTCGGAGTCGCTGTTCGAGAACTCGAGATCTAAAGCAATAGCGTCTGAAGTAGTTTCGGATCGAGATCTAAAGTTGTTCGCTTGA

Coding sequence (CDS)

ATGGATGAATTCAGGTCTATCAATTTGTTCAATGTGACTTACAAAATTGTGACAAAAGTAATTACCAACAGACTCAAAAAAGTCCTAGACTCCATTATCTCTCAAACTCAATCAACTTTCGTGTCGGGGAGATTGATAACAGATAACGTGGTGGTAGGTTTCGAGTGTATTCATGCCCTTAATAACAGAAGATCGGATAAAAGTGGGATCGTCGCTTTGAAGTTCGATATGAGCAAGACGTACGACAAGCTAACTAGAGAACTTGACCACAAGTCCGATGCAAGACAATCCGGTGGCTATTTGAGCAATTCGCTTGAAGTTGTGTCGGAGTCGCTGTTCGAGAACTCGAGATCTAAAGCAATAGCGTCTGAAGTAGTTTCGGATCGAGATCTAAAGTTGTTCGCTTGA

Protein sequence

MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNRRSDKSGIVALKFDMSKTYDKLTRELDHKSDARQSGGYLSNSLEVVSESLFENSRSKAIASEVVSDRDLKLFA
Homology
[Close]
BLAST of Lag0012010 vs. NCBI nr
Match: XP_035551682.1 (uncharacterized protein LOC118349865 [Juglans regia])

HSP 1 Score: 105.1 bits (261), Expect = 4.7e-19
Identity = 52/82 (63.41%), Postives = 64/82 (78.05%), Query Frame = 0 

Query: 3   EFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNN 62
           EFR I+L NV YKI++K I NRLKK+L SIISQTQ  FV GRLI+DNV+V FE +H +N 
Sbjct: 53  EFRHISLCNVLYKIISKTIANRLKKILPSIISQTQFAFVPGRLISDNVIVAFEALHTMNT 112

Query: 63  RRSDKSGIVALKFDMSKTYDKL 85
           + S K G +ALK DMSKTYD++
Sbjct: 113 KLSAKDGQMALKLDMSKTYDRI 134

[Close]
BLAST of Lag0012010 vs. NCBI nr
Match: XP_030942013.1 (uncharacterized protein LOC115967068 [Quercus lobata])

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-18
Identity = 51/84 (60.71%), Postives = 65/84 (77.38%), Query Frame = 0 

Query: 1   MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHAL 60
           M EFR I+L NV YKIV+KV+ NRLKKVL +IIS+ QS FV GR ITDNV+V FE +H +
Sbjct: 446 MSEFRPISLCNVIYKIVSKVLANRLKKVLPAIISEAQSAFVPGRQITDNVLVAFETMHYI 505

Query: 61  NNRRSDKSGIVALKFDMSKTYDKL 85
           N +R  K G++A+K DMSK YD++
Sbjct: 506 NQKRMGKKGLMAIKLDMSKAYDRV 529

[Close]
BLAST of Lag0012010 vs. NCBI nr
Match: XP_028090832.1 (uncharacterized protein LOC114291041 [Camellia sinensis])

HSP 1 Score: 102.1 bits (253), Expect = 4.0e-18
Identity = 49/84 (58.33%), Postives = 63/84 (75.00%), Query Frame = 0 

Query: 1   MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHAL 60
           M EFR I+L NV YKI++K++ NRLK+VL S+IS TQS F+ GRLITDN +V FE  H L
Sbjct: 513 MSEFRPISLCNVVYKIISKMLANRLKEVLPSVISDTQSAFIPGRLITDNALVAFEVFHFL 572

Query: 61  NNRRSDKSGIVALKFDMSKTYDKL 85
            N+R+ K G + LK DMSK YD++
Sbjct: 573 KNKRAGKDGCLPLKLDMSKDYDRV 596

[Close]
BLAST of Lag0012010 vs. NCBI nr
Match: XP_030923826.1 (uncharacterized protein LOC115950728 [Quercus lobata])

HSP 1 Score: 101.7 bits (252), Expect = 5.2e-18
Identity = 46/84 (54.76%), Postives = 66/84 (78.57%), Query Frame = 0 

Query: 1   MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHAL 60
           M ++R I+L NV YKI++KV+ NRLK++L  IIS TQS F+ GRLITDN++V +EC+HA+
Sbjct: 362 MSDYRPISLCNVIYKIISKVLANRLKQILPQIISPTQSAFIPGRLITDNIMVAYECLHAM 421

Query: 61  NNRRSDKSGIVALKFDMSKTYDKL 85
           + R+  K G +ALK D+SK YD++
Sbjct: 422 HCRKKGKKGSLALKLDISKAYDRV 445

[Close]
BLAST of Lag0012010 vs. NCBI nr
Match: XP_030923330.1 (uncharacterized protein LOC115950239 [Quercus lobata])

HSP 1 Score: 101.3 bits (251), Expect = 6.8e-18
Identity = 50/84 (59.52%), Postives = 64/84 (76.19%), Query Frame = 0 

Query: 1   MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHAL 60
           M EFR I+L NV YKI++KV+ NRLK+VL  IIS TQS FV GRLITDNV+V +E +H +
Sbjct: 902 MSEFRPISLCNVIYKIISKVLANRLKQVLPQIISSTQSAFVPGRLITDNVLVAYETLHTM 961

Query: 61  NNRRSDKSGIVALKFDMSKTYDKL 85
           + R+  K G VALK D+SK YD++
Sbjct: 962 HARKKGKKGDVALKLDISKAYDRV 985

[Close]
BLAST of Lag0012010 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 46.6 bits (109), Expect = 2.6e-04
Identity = 31/84 (36.90%), Postives = 46/84 (54.76%), Query Frame = 0 

Query: 4   FRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHALNNR 63
           +R ++L +  YKIV K I+ RLK VL  +I   QS  V GR I DNV +  + +H    R
Sbjct: 525 WRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPGRTIFDNVFLIRDLLHFA--R 584

Query: 64  RSDKSGIVALKFDMSKTYDKLTRE 88
           R+  S +  L  D  K +D++  +
Sbjct: 585 RTGLS-LAFLSLDQEKAFDRVDHQ 605

[Close]
BLAST of Lag0012010 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 5.8e-04
Identity = 25/84 (29.76%), Postives = 45/84 (53.57%), Query Frame = 0 

Query: 1   MDEFRSINLFNVTYKIVTKVITNRLKKVLDSIISQTQSTFVSGRLITDNVVVGFECIHAL 60
           ++ FR I+L N+  KI+ K++ NR+++ + +II   Q  F+ G     N+      IH +
Sbjct: 534 IENFRPISLMNIDAKILNKILANRIQEHIKAIIHPDQVGFIPGMQGWFNIRKSINVIHYI 593

Query: 61  NNRRSDKSGIVALKFDMSKTYDKL 85
           N  +     I++L  D  K +DK+
Sbjct: 594 NKLKDKNHMIISL--DAEKAFDKI 615

The following BLAST results are available for this feature:
BLAST of Lag0012010 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_035551682.14.7e-1963.41uncharacterized protein LOC118349865 [Juglans regia][more]
XP_030942013.11.0e-1860.71uncharacterized protein LOC115967068 [Quercus lobata][more]
XP_028090832.14.0e-1858.33uncharacterized protein LOC114291041 [Camellia sinensis][more]
XP_030923826.15.2e-1854.76uncharacterized protein LOC115950728 [Quercus lobata][more]
XP_030923330.16.8e-1859.52uncharacterized protein LOC115950239 [Quercus lobata][more]
BLAST of Lag0012010 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P143812.6e-0436.90Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV... [more]
P113695.8e-0429.76LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 3..87
e-value: 9.5E-12
score: 44.9
NoneNo IPR availablePANTHERPTHR19446:SF440SUBFAMILY NOT NAMEDcoord: 3..83
NoneNo IPR availablePANTHERPTHR19446REVERSE TRANSCRIPTASEScoord: 3..83

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0012010.1Lag0012010.1mRNA