Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAAAGGTCTACGCAGACCATAAAATGCTAGCCAAGGGCAAGGAGCTTGTGAAGCGCATGGCGGACAACGGTTGTCACATTGGTCCCTTGACCTGGGATGCAATCGTGAAGCTTTACGTGGAAGCAGGAGACGTGGAGAAAGCCGACTCTGTCTTGCAAAAGGCGATCCAACAGAAATCGATGAAGCCGATGCAGTGTTCTTTCATGACTATTTTAGATCAATATGCAGGAAGGGGAGATGTCCATAATGCTGAGAAAATGTTCCACATGATGAGAGAAGCAGGGTATGTGAGTAGGCCTCGCCAGTTTCACGCTCTGTTGCAGGCTTATATCAACGCCAAGGCGCCAGCTTATGGCATGAGCGAGCGATTGAAAGCGGACAATATCAATATTAATAGAGCTTTGTCAACGCTGTTGGATCAGGTTAGTGTATTTAGAAGGACAGCAGTTTCTGATTTGCTCGACTGA
mRNA sequence
ATGCTAAAGGTCTACGCAGACCATAAAATGCTAGCCAAGGGCAAGGAGCTTGTGAAGCGCATGGCGGACAACGGTTGTCACATTGGTCCCTTGACCTGGGATGCAATCGTGAAGCTTTACGTGGAAGCAGGAGACGTGGAGAAAGCCGACTCTGTCTTGCAAAAGGCGATCCAACAGAAATCGATGAAGCCGATGCAGTGTTCTTTCATGACTATTTTAGATCAATATGCAGGAAGGGGAGATGTCCATAATGCTGAGAAAATGTTCCACATGATGAGAGAAGCAGGGTATGTGAGTAGGCCTCGCCAGTTTCACGCTCTGTTGCAGGCTTATATCAACGCCAAGGCGCCAGCTTATGGCATGAGCGAGCGATTGAAAGCGGACAATATCAATATTAATAGAGCTTTGTCAACGCTGTTGGATCAGGTTAGTGTATTTAGAAGGACAGCAGTTTCTGATTTGCTCGACTGA
Coding sequence (CDS)
ATGCTAAAGGTCTACGCAGACCATAAAATGCTAGCCAAGGGCAAGGAGCTTGTGAAGCGCATGGCGGACAACGGTTGTCACATTGGTCCCTTGACCTGGGATGCAATCGTGAAGCTTTACGTGGAAGCAGGAGACGTGGAGAAAGCCGACTCTGTCTTGCAAAAGGCGATCCAACAGAAATCGATGAAGCCGATGCAGTGTTCTTTCATGACTATTTTAGATCAATATGCAGGAAGGGGAGATGTCCATAATGCTGAGAAAATGTTCCACATGATGAGAGAAGCAGGGTATGTGAGTAGGCCTCGCCAGTTTCACGCTCTGTTGCAGGCTTATATCAACGCCAAGGCGCCAGCTTATGGCATGAGCGAGCGATTGAAAGCGGACAATATCAATATTAATAGAGCTTTGTCAACGCTGTTGGATCAGGTTAGTGTATTTAGAAGGACAGCAGTTTCTGATTTGCTCGACTGA
Protein sequence
MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQKSMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAKAPAYGMSERLKADNININRALSTLLDQVSVFRRTAVSDLLD
Homology
BLAST of Lag0011987 vs. NCBI nr
Match:
XP_022932852.1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucurbita moschata])
HSP 1 Score: 300.8 bits (769), Expect = 6.7e-78
Identity = 148/156 (94.87%), Postives = 153/156 (98.08%), Query Frame = 0
Query: 1 MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 60
MLKVYADHKMLAKGK+LVKRM DNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK
Sbjct: 464 MLKVYADHKMLAKGKDLVKRMGDNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 523
Query: 61 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAKAPAYG 120
SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFH+LLQAYINAKAPAYG
Sbjct: 524 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHSLLQAYINAKAPAYG 583
Query: 121 MSERLKADNININRALSTLLDQVSVFRRTAVSDLLD 157
M ER+KADNININRALST+L QVSVFR+TAVSDLLD
Sbjct: 584 MGERMKADNININRALSTMLAQVSVFRKTAVSDLLD 619
BLAST of Lag0011987 vs. NCBI nr
Match:
KAG6603307.1 (Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 300.8 bits (769), Expect = 6.7e-78
Identity = 148/156 (94.87%), Postives = 153/156 (98.08%), Query Frame = 0
Query: 1 MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 60
MLKVYADHKMLAKGK+LVKRM DNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK
Sbjct: 464 MLKVYADHKMLAKGKDLVKRMGDNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 523
Query: 61 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAKAPAYG 120
SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFH+LLQAYINAKAPAYG
Sbjct: 524 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHSLLQAYINAKAPAYG 583
Query: 121 MSERLKADNININRALSTLLDQVSVFRRTAVSDLLD 157
M ER+KADNININRALST+L QVSVFR+TAVSDLLD
Sbjct: 584 MGERMKADNININRALSTMLAQVSVFRKTAVSDLLD 619
BLAST of Lag0011987 vs. NCBI nr
Match:
XP_023544764.1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucurbita pepo subsp. pepo])
HSP 1 Score: 299.7 bits (766), Expect = 1.5e-77
Identity = 147/156 (94.23%), Postives = 153/156 (98.08%), Query Frame = 0
Query: 1 MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 60
MLKVYADHKMLAKGK+LVKRM DNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK
Sbjct: 464 MLKVYADHKMLAKGKDLVKRMGDNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 523
Query: 61 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAKAPAYG 120
SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFH+LLQAYINAKAPAYG
Sbjct: 524 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHSLLQAYINAKAPAYG 583
Query: 121 MSERLKADNININRALSTLLDQVSVFRRTAVSDLLD 157
M +R+KADNININRALST+L QVSVFR+TAVSDLLD
Sbjct: 584 MGDRMKADNININRALSTMLAQVSVFRKTAVSDLLD 619
BLAST of Lag0011987 vs. NCBI nr
Match:
XP_022967740.1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucurbita maxima])
HSP 1 Score: 298.1 bits (762), Expect = 4.4e-77
Identity = 147/156 (94.23%), Postives = 151/156 (96.79%), Query Frame = 0
Query: 1 MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 60
MLKVYADHKMLAKGK+LVKRM DNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQ AIQQK
Sbjct: 464 MLKVYADHKMLAKGKDLVKRMGDNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQNAIQQK 523
Query: 61 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAKAPAYG 120
SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFH+LLQAYINAKAPAYG
Sbjct: 524 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHSLLQAYINAKAPAYG 583
Query: 121 MSERLKADNININRALSTLLDQVSVFRRTAVSDLLD 157
M ER+KADNININRALSTLL QVS FR+TAVSDLLD
Sbjct: 584 MGERMKADNININRALSTLLAQVSAFRKTAVSDLLD 619
BLAST of Lag0011987 vs. NCBI nr
Match:
XP_022153925.1 (pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Momordica charantia])
HSP 1 Score: 296.6 bits (758), Expect = 1.3e-76
Identity = 146/156 (93.59%), Postives = 152/156 (97.44%), Query Frame = 0
Query: 1 MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 60
MLKVYADHKMLAKGK+LVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKA+QQ
Sbjct: 468 MLKVYADHKMLAKGKDLVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAMQQN 527
Query: 61 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAKAPAYG 120
SMKPMQCSFMTILDQYAGRGD+HNAEKMFH+MREAGYVSRPRQF ALLQAYINAKAPAYG
Sbjct: 528 SMKPMQCSFMTILDQYAGRGDIHNAEKMFHLMREAGYVSRPRQFQALLQAYINAKAPAYG 587
Query: 121 MSERLKADNININRALSTLLDQVSVFRRTAVSDLLD 157
MSER+KADNININRALST L QVSVFR+TAVSDLLD
Sbjct: 588 MSERMKADNININRALSTQLSQVSVFRKTAVSDLLD 623
BLAST of Lag0011987 vs. ExPASy Swiss-Prot
Match:
Q9C977 (Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80270 PE=2 SV=1)
HSP 1 Score: 205.3 bits (521), Expect = 5.0e-52
Identity = 100/156 (64.10%), Postives = 126/156 (80.77%), Query Frame = 0
Query: 1 MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 60
+L+VY DHKML+KGK+LVKRMA++GC I TWDA++KLYVEAG+VEKADS+L KA +Q
Sbjct: 441 LLRVYVDHKMLSKGKDLVKRMAESGCRIEATTWDALIKLYVEAGEVEKADSLLDKASKQS 500
Query: 61 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAKAPAYG 120
K M SFM I+D+Y+ RGDVHN EK+F MREAGY SR RQF AL+QAYINAK+PAYG
Sbjct: 501 HTKLMMNSFMYIMDEYSKRGDVHNTEKIFLKMREAGYTSRLRQFQALMQAYINAKSPAYG 560
Query: 121 MSERLKADNININRALSTLLDQVSVFRRTAVSDLLD 157
M +RLKADNI N++++ L Q F++TA+SD+LD
Sbjct: 561 MRDRLKADNIFPNKSMAAQLAQGDPFKKTAISDILD 596
BLAST of Lag0011987 vs. ExPASy Swiss-Prot
Match:
Q9XI21 (Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g15480 PE=2 SV=2)
HSP 1 Score: 198.0 bits (502), Expect = 8.0e-50
Identity = 92/156 (58.97%), Postives = 124/156 (79.49%), Query Frame = 0
Query: 1 MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 60
+L+VY DHKM+++GK+LVK+M+D+GC+IG LTWDA++KLYVEAG+VEKA+S L KAIQ K
Sbjct: 439 LLRVYVDHKMVSEGKDLVKQMSDSGCNIGALTWDAVIKLYVEAGEVEKAESSLSKAIQSK 498
Query: 61 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAKAPAYG 120
+KP+ SFM ++ +Y RGDVHN EK+F M++AGY SR + L+QAY+NAKAPAYG
Sbjct: 499 QIKPLMSSFMYLMHEYVRRGDVHNTEKIFQRMKQAGYQSRFWAYQTLIQAYVNAKAPAYG 558
Query: 121 MSERLKADNININRALSTLLDQVSVFRRTAVSDLLD 157
M ER+KADNI N+ L+ L + F++T +SDLLD
Sbjct: 559 MKERMKADNIFPNKRLAAQLAKADPFKKTPLSDLLD 594
BLAST of Lag0011987 vs. ExPASy Swiss-Prot
Match:
Q9LRP6 (Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At3g15590 PE=1 SV=1)
HSP 1 Score: 169.5 bits (428), Expect = 3.1e-41
Identity = 80/156 (51.28%), Postives = 116/156 (74.36%), Query Frame = 0
Query: 1 MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 60
++++Y ++KMLAKG++LVKRM + G IGP TW A+VKLY++AG+V KA+ +L +A +
Sbjct: 454 LMEIYTENKMLAKGRDLVKRMGNAGIAIGPSTWHALVKLYIKAGEVGKAELILNRATKDN 513
Query: 61 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAKAPAYG 120
M+PM ++M IL++YA RGDVHN EK+F M+ A Y ++ Q+ +L AYINAK PAYG
Sbjct: 514 KMRPMFTTYMAILEEYAKRGDVHNTEKVFMKMKRASYAAQLMQYETVLLAYINAKTPAYG 573
Query: 121 MSERLKADNININRALSTLLDQVSVFRRTAVSDLLD 157
M ER+KADN+ N++L+ L QV+ F++ VS LLD
Sbjct: 574 MIERMKADNVFPNKSLAAKLAQVNPFKKCPVSVLLD 609
BLAST of Lag0011987 vs. ExPASy Swiss-Prot
Match:
O22714 (Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana OX=3702 GN=At1g60770 PE=1 SV=1)
HSP 1 Score: 61.2 bits (147), Expect = 1.2e-08
Identity = 36/149 (24.16%), Postives = 67/149 (44.97%), Query Frame = 0
Query: 1 MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAI--- 60
++ YA ++ K EL ++ G + TW+ + YV++GD+ +A + KA+
Sbjct: 340 LIGAYAQEGLIQKANELKEKAPRRGGKLNAKTWEIFMDYYVKSGDMARALECMSKAVSIG 399
Query: 61 --QQKSMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAK 120
P + ++ + + DV+ AE + +++ F L++ Y A
Sbjct: 400 KGDGGKWLPSPETVRALMSYFEQKKDVNGAENLLEILKNGTDNIGAEIFEPLIRTYAAAG 459
Query: 121 APAYGMSERLKADNININRALSTLLDQVS 145
M RLK +N+ +N A LLD+VS
Sbjct: 460 KSHPAMRRRLKMENVEVNEATKKLLDEVS 488
BLAST of Lag0011987 vs. ExPASy Swiss-Prot
Match:
O64624 (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g18940 PE=2 SV=1)
HSP 1 Score: 58.2 bits (139), Expect = 9.9e-08
Identity = 37/138 (26.81%), Postives = 74/138 (53.62%), Query Frame = 0
Query: 1 MLKVYADHKMLAKGKELVKRMADNGCHIGPLTWDAIVKLYVEAGDVEKADSVLQKAIQQK 60
+L+V+ + + ++K M +N C +T++ +V YV AG ++A V++ + +K
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIE-MMTKK 381
Query: 61 SMKPMQCSFMTILDQYAGRGDVHNAEKMFHMMREAGYVSRPRQFHALLQAYINAKAPAYG 120
+ P ++ T++D Y G A K+F+ M+EAG V ++A+L + + K+ +
Sbjct: 382 GVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVL-SLLGKKSRSNE 441
Query: 121 MSERL---KADNININRA 136
M + L K++ + NRA
Sbjct: 442 MIKMLCDMKSNGCSPNRA 457
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
XP_022932852.1 | 6.7e-78 | 94.87 | pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucur... | [more] |
KAG6603307.1 | 6.7e-78 | 94.87 | Pentatricopeptide repeat-containing protein, mitochondrial, partial [Cucurbita a... | [more] |
XP_023544764.1 | 1.5e-77 | 94.23 | pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucur... | [more] |
XP_022967740.1 | 4.4e-77 | 94.23 | pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Cucur... | [more] |
XP_022153925.1 | 1.3e-76 | 93.59 | pentatricopeptide repeat-containing protein At1g80270, mitochondrial-like [Momor... | [more] |
Match Name | E-value | Identity | Description | |
Q9C977 | 5.0e-52 | 64.10 | Pentatricopeptide repeat-containing protein At1g80270, mitochondrial OS=Arabidop... | [more] |
Q9XI21 | 8.0e-50 | 58.97 | Pentatricopeptide repeat-containing protein At1g15480, mitochondrial OS=Arabidop... | [more] |
Q9LRP6 | 3.1e-41 | 51.28 | Pentatricopeptide repeat-containing protein At3g15590, mitochondrial OS=Arabidop... | [more] |
O22714 | 1.2e-08 | 24.16 | Pentatricopeptide repeat-containing protein At1g60770 OS=Arabidopsis thaliana OX... | [more] |
O64624 | 9.9e-08 | 26.81 | Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop... | [more] |