Lag0011962 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011962
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr1: 35555560 .. 35555901 (+)
RNA-Seq ExpressionLag0011962
SyntenyLag0011962
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCTAGAGAACAACGCAAGCCTCACATCAACCTCTTAACTGCCAAACAACAACCAGGTGAGAGCTTGCGTGATTATATAACACGTTTTAACGAGGAAGCACTGCATGTTAAGAGATACATTGAGGGAGTAGTCCTAGTAGCCATCACAACTGGACTAGAAGATGAGAGACTACTCAATTCAATAGGTAAGAGCCAACCTCGAACCTATGCTGAGTTCGTTTCCAAGACACAGAAGTATATGAGCGCAGATGAGCTATTGAAATCAAAGAGGTCAAAACGAGAGCACAAGAGACATTCTTCGGTCGATCAGGACAGAATGAAAGATAAGAGACATTAA

mRNA sequence

ATGGGAGCTAGAGAACAACGCAAGCCTCACATCAACCTCTTAACTGCCAAACAACAACCAGGTGAGAGCTTGCGTGATTATATAACACGTTTTAACGAGGAAGCACTGCATGTTAAGAGATACATTGAGGGAGTAGTCCTAGTAGCCATCACAACTGGACTAGAAGATGAGAGACTACTCAATTCAATAGGTAAGAGCCAACCTCGAACCTATGCTGAGTTCGTTTCCAAGACACAGAAGTATATGAGCGCAGATGAGCTATTGAAATCAAAGAGGTCAAAACGAGAGCACAAGAGACATTCTTCGGTCGATCAGGACAGAATGAAAGATAAGAGACATTAA

Coding sequence (CDS)

ATGGGAGCTAGAGAACAACGCAAGCCTCACATCAACCTCTTAACTGCCAAACAACAACCAGGTGAGAGCTTGCGTGATTATATAACACGTTTTAACGAGGAAGCACTGCATGTTAAGAGATACATTGAGGGAGTAGTCCTAGTAGCCATCACAACTGGACTAGAAGATGAGAGACTACTCAATTCAATAGGTAAGAGCCAACCTCGAACCTATGCTGAGTTCGTTTCCAAGACACAGAAGTATATGAGCGCAGATGAGCTATTGAAATCAAAGAGGTCAAAACGAGAGCACAAGAGACATTCTTCGGTCGATCAGGACAGAATGAAAGATAAGAGACATTAA

Protein sequence

MGAREQRKPHINLLTAKQQPGESLRDYITRFNEEALHVKRYIEGVVLVAITTGLEDERLLNSIGKSQPRTYAEFVSKTQKYMSADELLKSKRSKREHKRHSSVDQDRMKDKRH
Homology
BLAST of Lag0011962 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 89.4 bits (220), Expect = 2.2e-14
Identity = 49/113 (43.36%), Postives = 71/113 (62.83%), Query Frame = 0

Query: 1   MGAREQRKPHINLLTAKQQPGESLRDYITRFNEEALHVKRYIEGVVLVAITTGLEDERLL 60
           +G R + KP   LLT KQ+  ESL++Y+ RFNEE L V+   + V L+A  +G++DERL+
Sbjct: 83  VGGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQVEGLTDAVALIAFVSGVKDERLV 142

Query: 61  NSIGKSQPRTYAEFVSKTQKYMSADELLKSKRSKREHKRHSSVDQDRMKDKRH 114
            S GK  P T+ E +S+ QKYMSA EL+   R     + + S  ++R  +KRH
Sbjct: 143 FSFGKRTPGTFMEALSRAQKYMSAGELIHLSRDLERERANYSTKRERRGEKRH 195

BLAST of Lag0011962 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 81.3 bits (199), Expect = 6.1e-12
Identity = 48/109 (44.04%), Postives = 66/109 (60.55%), Query Frame = 0

Query: 1   MGAREQRKPHINLLTAKQQPGESLRDYITRFNEEALHVKRYIEGVVLVAITTGLEDERLL 60
           +G R + +P   LLT KQ+  ESLRDY+ RFNEE L V+   + V L+A  +G+ DE L 
Sbjct: 267 VGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQVEGLTDAVSLLAFMSGVRDEHLS 326

Query: 61  NSIGKSQPRTYAEFVSKTQKYMSADELLKSKR----SKREHKRHSSVDQ 106
            S GK  P T++E +S+ Q+YMSA E   SKR     + + KR  S D+
Sbjct: 327 FSFGKRTPNTFSEALSRAQRYMSAGEFFYSKREPDGKRTDPKRERSGDK 375

BLAST of Lag0011962 vs. NCBI nr
Match: XP_024047974.1 (uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 uncharacterized protein LOC112498174 [Citrus sinensis])

HSP 1 Score: 79.7 bits (195), Expect = 1.8e-11
Identity = 46/107 (42.99%), Postives = 65/107 (60.75%), Query Frame = 0

Query: 3   AREQRKPHINLLTAKQQPGESLRDYITRFNEEALHVKRYIEGVVLVAITTGLEDERLLNS 62
           AR++ KP   LLT KQ  GESLR+YI R+N E   V  Y +GV L  +  GL+  RL  S
Sbjct: 108 ARQRGKPVTYLLTVKQHEGESLREYIQRYNAETTQVDGYDDGVALSGLMEGLQMGRLWWS 167

Query: 63  IGKSQPRTYAEFVSKTQKYMSADELLKSK--RSKREHKRHSSVDQDR 108
           + K+ P TY+E +S+ +KY +A+E  +SK  R K E  ++    +DR
Sbjct: 168 VAKNPPSTYSEMLSRAEKYANAEERFQSKKGREKGESSKNKKTKEDR 214

BLAST of Lag0011962 vs. NCBI nr
Match: XP_022159368.1 (uncharacterized protein LOC111025785 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 8.7e-11
Identity = 45/109 (41.28%), Postives = 65/109 (59.63%), Query Frame = 0

Query: 1   MGAREQRKPHINLLTAKQQPGESLRDYITRFNEEALHVKRYIEGVVLVAITTGLEDERLL 60
           +G R + +P   LLT KQ+  ESL DY+ RFN+E L ++   + V L+A  +G+ DE L 
Sbjct: 51  VGGRCRSRPVAYLLTIKQRTTESLHDYVARFNKEKLQIESLTDVVSLLAFMSGVRDEHLS 110

Query: 61  NSIGKSQPRTYAEFVSKTQKYMSADELLKSKR----SKREHKRHSSVDQ 106
            S GK  P T++E +S+ Q+YMSA E   SKR     + + KR  S D+
Sbjct: 111 FSFGKKTPSTFSETLSRAQRYMSAGEFFYSKREPDGKRTDQKRERSGDK 159

BLAST of Lag0011962 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 77.4 bits (189), Expect = 8.7e-11
Identity = 47/111 (42.34%), Postives = 64/111 (57.66%), Query Frame = 0

Query: 1   MGAREQRKPHINLLTAKQQPGESLRDYITRFNEEALHVKRYIEGVVLVAITTGLEDERLL 60
           +G R + +P   LLT KQ+  ESL DY+ RFNEE L V+     V L+A  + + DE L 
Sbjct: 87  IGGRSRSRPVAYLLTIKQRATESLHDYVARFNEEKLQVEGLTNAVSLMAFMSDIRDEHLS 146

Query: 61  NSIGKSQPRTYAEFVSKTQKYMSADELLKSKRSKREHKRHSSVDQDRMKDK 112
            S GK  P T++E +S+ QKYMSA E   SKR      + S  +++R  DK
Sbjct: 147 FSFGKKTPSTFSEALSRAQKYMSAGEFFFSKR--EPEGKQSDQNRERSGDK 195

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022158344.12.2e-1443.36uncharacterized protein LOC111024851 [Momordica charantia][more]
XP_022158830.16.1e-1244.04uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_024047974.11.8e-1142.99uncharacterized protein LOC112101548 [Citrus clementina] >XP_024953918.1 unchara... [more]
XP_022159368.18.7e-1141.28uncharacterized protein LOC111025785 [Momordica charantia][more]
XP_022150035.18.7e-1142.34uncharacterized protein LOC111018307 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..113
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 99..113

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011962.1Lag0011962.1mRNA