Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACGGACGATGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAATTGCGGTTAAATTGATGGAAGCACTTACAAACAGGTATGAAAAACCCTCTGCGAATAATAAAGTCTACCTAGTTAAGAAGTTCTTCAACATGCAAATGGCTGAGGATGCTTCTGTGAATTCCTATATTAATGAAGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGGATTTACTGATGAGGTGAATGCTATTCAGTTATTAACATCTTTACCTGATAGTTGGGAAACGATGGAGACAGCAGTGTCTAATTCGACTGGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGACAGGGTAGTAATAAGGAGTCTACAGTAGGGTCAGCTTTGGCTATGACTAGAGGTAAAGATAAGATTGATGAAGATAATGAACCGAGTAGCAGTAGGAAAAGTGGAAAAATAGGAATGAGGTAGAATGTTTTTACTGCCACAAGAAAGGTCACTTCAAGAGTCAGTGTAGAAAATTTAAAGAGGATCTGAAAAGAAAACACGAGGCAAATACAGTGTATGATGCCTTAGTTTGTGTTGAGAGTGACACAAAATGTAGTAACCATTCATCAGATTGGATATTAGACAGTGCGGCGTCTATACACATAGCTTCATATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTGGAGATAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAACTTGGCAGATGATGGTTACAGTTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGAAGTGGCAGTCGGTCACAGGAAACCTACACTGTACAAATGTAAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGTCGGTTAAAGCTGCAGATGGTTGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCGTGAATCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAATTGGTCAGGTCTCTAGCTTGGCAACAGGTTTGAATAGAGGATTCAAACCATTCTTCTTCGGGAACAGTCGTTCAAGTTGGAAGAAGATAACAGGAGTCACCACTTAGCTGAAGTGGGAGTACGTGTCTGTCTTTTTCGTCTGGGAGACAGATCCACGTAGCTAGCCCATACCTCGAGGCGAGCACAGATAAGCTACAGTTATATTCTGATAGTTGCCTGTTTTTGTGAGTTTTTTGCTTTTCAGGTATTTTGAGTCTTGGAGTTTTACCAAGAAGATCAGAAATAACAGTTGTAGTGGGAATAGATCCTTGGAGTTTGCCAAGATGA
mRNA sequence
ATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACGGACGATGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAATTGCGGTTAAATTGATGGAAGCACTTACAAACAGGTATGAAAAACCCTCTGCGAATAATAAAGTCTACCTAGTTAAGAAGTTCTTCAACATGCAAATGGCTGAGGATGCTTCTGTGAATTCCTATATTAATGAAGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGGATTTACTGATGAGGTGAATGCTATTCAGTTATTAACATCTTTACCTGATAGTTGGGAAACGATGGAGACAGCAGTGTCTAATTCGACTGGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGACAGGGTAGTAATAAGGAGTCTACAGTAGGGTCAGCTTTGGCTATGACTAGAGGTAAAGATAAGATTGATGAAGATAATGAACCGAGTAGCAGTAGGAAAAGTGGAAAAATAGGAATGAGTGCGGCGTCTATACACATAGCTTCATATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTGGAGATAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAACTTGGCAGATGATGGTTACAGTTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGAAGTGGCAGTCGGTCACAGGAAACCTACACTGTACAAATGTAAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGTCGGTTAAAGCTGCAGATGGTTGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCGTGAATCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAATTGGTCAGGTCTCTAGCTTGGCAACAGGTATTTTGAGTCTTGGAGTTTTACCAAGAAGATCAGAAATAACAGTTGTAGTGGGAATAGATCCTTGGAGTTTGCCAAGATGA
Coding sequence (CDS)
ATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACGGACGATGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAATTGCGGTTAAATTGATGGAAGCACTTACAAACAGGTATGAAAAACCCTCTGCGAATAATAAAGTCTACCTAGTTAAGAAGTTCTTCAACATGCAAATGGCTGAGGATGCTTCTGTGAATTCCTATATTAATGAAGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGGATTTACTGATGAGGTGAATGCTATTCAGTTATTAACATCTTTACCTGATAGTTGGGAAACGATGGAGACAGCAGTGTCTAATTCGACTGGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGACAGGGTAGTAATAAGGAGTCTACAGTAGGGTCAGCTTTGGCTATGACTAGAGGTAAAGATAAGATTGATGAAGATAATGAACCGAGTAGCAGTAGGAAAAGTGGAAAAATAGGAATGAGTGCGGCGTCTATACACATAGCTTCATATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTGGAGATAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAACTTGGCAGATGATGGTTACAGTTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGAAGTGGCAGTCGGTCACAGGAAACCTACACTGTACAAATGTAAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGTCGGTTAAAGCTGCAGATGGTTGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCGTGAATCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAATTGGTCAGGTCTCTAGCTTGGCAACAGGTATTTTGAGTCTTGGAGTTTTACCAAGAAGATCAGAAATAACAGTTGTAGTGGGAATAGATCCTTGGAGTTTGCCAAGATGA
Protein sequence
MQVKDYLTCRKLHKALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAMTRGKDKIDEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLYKCKLDVAKRSRRQWMSVKAADGCCRGTVEPAARIANFDQSDHDPSIQKQLGSPGDGYRESPVVRRSNELKKSLRRVEASKWKAKAIGQVSSLATGILSLGVLPRRSEITVVVGIDPWSLPR
Homology
BLAST of Lag0011796 vs. NCBI nr
Match:
RVW60263.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 225.3 bits (573), Expect = 9.9e-55
Identity = 132/311 (42.44%), Postives = 191/311 (61.41%), Query Frame = 0
Query: 1 MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
MQ++DYL RKLH L KP+ M ++W LD + + IR+ LS VA V E
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83
Query: 61 LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
LM+AL+ YEKPSANNKV+L+KK FN++MAE+ASV ++NE T+ NQL SV+I F DE+
Sbjct: 84 LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143
Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
A+ +L SLP+SWE M AVSNSTG LK++++ DL +AEEIRR+ + + S GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203
Query: 181 -TRGKDKI-DEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSK 240
TRG++++ D S + S AS H +R + ++ G G V + +G
Sbjct: 204 ETRGREEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALD 263
Query: 241 TSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQE 300
G+GDV + G +L VR +P+++ NLIS+G L D+G++ F K+T G++
Sbjct: 264 VVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARV 323
Query: 301 VAVGHRKPTLY 309
+A G + TLY
Sbjct: 324 LARGKKTGTLY 334
BLAST of Lag0011796 vs. NCBI nr
Match:
RVW17147.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 222.2 bits (565), Expect = 8.3e-54
Identity = 128/310 (41.29%), Postives = 184/310 (59.35%), Query Frame = 0
Query: 1 MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
MQ++DYL RKLH L KP+ M ++W LD + + IR+ LS VA V E
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83
Query: 61 LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
LM+ L+ YEKPSANNKV+L+KK FN++M E+ASV ++NE T+ NQL SV+I F DE+
Sbjct: 84 LMKVLSGMYEKPSANNKVHLMKKLFNLKMTENASVAQHLNEFNTITNQLSSVEIDFDDEI 143
Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
A+ +L SLP+SWE M AVSNSTG LK++++ DL +AEEIRR+ + + S GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203
Query: 181 -TRGKDKIDEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKT 240
TRG+ N+ AS H +R + ++ G G V + +G
Sbjct: 204 ETRGRGNNRNSNQ-------------GASFHTTPHREIIQNYVAGDFGKVYLADGSALDV 263
Query: 241 SGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEV 300
G+GDV + G +L VR +P+++ NLIS+G L D+G++ F K+T G++ +
Sbjct: 264 VGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 320
Query: 301 AVGHRKPTLY 309
A G + TLY
Sbjct: 324 ARGKKTGTLY 320
BLAST of Lag0011796 vs. NCBI nr
Match:
RVW73393.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 219.9 bits (559), Expect = 4.1e-53
Identity = 133/334 (39.82%), Postives = 195/334 (58.38%), Query Frame = 0
Query: 1 MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
MQ++DYL RKLH L KP+ M ++W LD + + IR+ LS VA V E
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83
Query: 61 LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
LM+AL+ YEKPSANNKV+L+KK FN++MAE+ASV ++NE T+ NQL SV+I F DE+
Sbjct: 84 LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143
Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
A+ +L SLP+SWE M AVSNSTG LK++++ DL +AEEIRR+ + + S GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203
Query: 181 -TRGK----------DKIDEDNEPSSSRKSGKIGM--------------SAASIHIASYR 240
TRG+ K +ED+ ++ + + + S AS H +R
Sbjct: 204 ETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHR 263
Query: 241 SLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN 300
+ ++ G G V + +G G+GDV + G +L VR +P+++ NLIS+G
Sbjct: 264 EIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQ 323
Query: 301 LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
L D+G++ F K+T G++ +A G + TLY
Sbjct: 324 LDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 357
BLAST of Lag0011796 vs. NCBI nr
Match:
RVX09487.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 219.9 bits (559), Expect = 4.1e-53
Identity = 135/338 (39.94%), Postives = 195/338 (57.69%), Query Frame = 0
Query: 1 MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
MQ++DYL RKLH L KP+ M ++W LD + + IR+ LS VA V E
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83
Query: 61 LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
LM+AL+ YEKPSANNKV+L+KK FN++MAE+ASV ++NE T+ NQL SV+I F DE+
Sbjct: 84 LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143
Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
+A+ +L SLP+SWE M AVSNSTG LK++++ DL +AEEIRR+ + + S GSAL +
Sbjct: 144 HALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203
Query: 181 -TRGKDKIDEDNE-PSSSRKSGK---------------------------IGMSAASIHI 240
TRG+ N+ S+SR S + + S AS H
Sbjct: 204 ETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTVDSPLDDWVLDSGASFHT 263
Query: 241 ASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLI 300
+R + ++ G G V + +G G+GDV + G +L VR +P+++ NLI
Sbjct: 264 TPHREIIQNYVVGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLI 323
Query: 301 SIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
S+G L D+G++ F K+T G++ +A G + TLY
Sbjct: 324 SVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 361
BLAST of Lag0011796 vs. NCBI nr
Match:
RVW17810.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])
HSP 1 Score: 219.9 bits (559), Expect = 4.1e-53
Identity = 133/334 (39.82%), Postives = 195/334 (58.38%), Query Frame = 0
Query: 1 MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
MQ++DYL RKLH L KP+ M ++W LD + + IR+ LS VA V E
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83
Query: 61 LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
LM+AL+ YEKPSANNKV+L+KK FN++MAE+ASV ++NE T+ NQL SV+I F DE+
Sbjct: 84 LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143
Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
A+ +L SLP+SWE M AVSNSTG LK++++ DL +AEEIRR+ + + S GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203
Query: 181 -TRGK----------DKIDEDNEPSSSRKSGKIGM--------------SAASIHIASYR 240
TRG+ K +ED+ ++ + + + S AS H +R
Sbjct: 204 ETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHR 263
Query: 241 SLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN 300
+ ++ G G V + +G G+GDV + G +L VR +P+++ NLIS+G
Sbjct: 264 EIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQ 323
Query: 301 LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
L D+G++ F K+T G++ +A G + TLY
Sbjct: 324 LDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 357
BLAST of Lag0011796 vs. ExPASy Swiss-Prot
Match:
P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)
HSP 1 Score: 139.4 bits (350), Expect = 9.3e-32
Identity = 113/390 (28.97%), Postives = 179/390 (45.90%), Query Frame = 0
Query: 2 QVKDYLTCRKLHKAL---KEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAV 61
+++D L + LHK L +KP M +DW LDE A ++IR+ LS DV + + E A
Sbjct: 23 RMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTAR 82
Query: 62 KLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDE 121
+ L + Y + NK+YL K+ + + M+E + S++N LI QL ++ + +E
Sbjct: 83 GIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEE 142
Query: 122 VNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCD-LAIAEEIRRQGSN--------- 181
AI LL SLP S++ + T + + G T++ +V L + E++R++ N
Sbjct: 143 DKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKMRKKPENQGQALITEG 202
Query: 182 ---------------------------------------------------KESTVG--- 241
K T G
Sbjct: 203 RGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKN 262
Query: 242 --SALAMTRGKDKI------DEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHG 301
+ AM + D + +E+ S +S + +AAS H R LF + G G
Sbjct: 263 DDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFG 322
Query: 302 LVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGS 317
V+MGN SK +GIGD+ +KT G LVL+DVR VP+++MNLIS L DGY F +
Sbjct: 323 TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFAN 382
BLAST of Lag0011796 vs. ExPASy TrEMBL
Match:
A0A438FJS0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4031 PE=4 SV=1)
HSP 1 Score: 225.3 bits (573), Expect = 4.8e-55
Identity = 132/311 (42.44%), Postives = 191/311 (61.41%), Query Frame = 0
Query: 1 MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
MQ++DYL RKLH L KP+ M ++W LD + + IR+ LS VA V E
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83
Query: 61 LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
LM+AL+ YEKPSANNKV+L+KK FN++MAE+ASV ++NE T+ NQL SV+I F DE+
Sbjct: 84 LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143
Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
A+ +L SLP+SWE M AVSNSTG LK++++ DL +AEEIRR+ + + S GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203
Query: 181 -TRGKDKI-DEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSK 240
TRG++++ D S + S AS H +R + ++ G G V + +G
Sbjct: 204 ETRGREEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALD 263
Query: 241 TSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQE 300
G+GDV + G +L VR +P+++ NLIS+G L D+G++ F K+T G++
Sbjct: 264 VVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARV 323
Query: 301 VAVGHRKPTLY 309
+A G + TLY
Sbjct: 324 LARGKKTGTLY 334
BLAST of Lag0011796 vs. ExPASy TrEMBL
Match:
A0A438C1P0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1540 PE=4 SV=1)
HSP 1 Score: 222.2 bits (565), Expect = 4.0e-54
Identity = 128/310 (41.29%), Postives = 184/310 (59.35%), Query Frame = 0
Query: 1 MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
MQ++DYL RKLH L KP+ M ++W LD + + IR+ LS VA V E
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83
Query: 61 LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
LM+ L+ YEKPSANNKV+L+KK FN++M E+ASV ++NE T+ NQL SV+I F DE+
Sbjct: 84 LMKVLSGMYEKPSANNKVHLMKKLFNLKMTENASVAQHLNEFNTITNQLSSVEIDFDDEI 143
Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
A+ +L SLP+SWE M AVSNSTG LK++++ DL +AEEIRR+ + + S GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203
Query: 181 -TRGKDKIDEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKT 240
TRG+ N+ AS H +R + ++ G G V + +G
Sbjct: 204 ETRGRGNNRNSNQ-------------GASFHTTPHREIIQNYVAGDFGKVYLADGSALDV 263
Query: 241 SGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEV 300
G+GDV + G +L VR +P+++ NLIS+G L D+G++ F K+T G++ +
Sbjct: 264 VGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 320
Query: 301 AVGHRKPTLY 309
A G + TLY
Sbjct: 324 ARGKKTGTLY 320
BLAST of Lag0011796 vs. ExPASy TrEMBL
Match:
A0A438GME7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3541 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 2.0e-53
Identity = 133/334 (39.82%), Postives = 195/334 (58.38%), Query Frame = 0
Query: 1 MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
MQ++DYL RKLH L KP+ M ++W LD + + IR+ LS VA V E
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83
Query: 61 LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
LM+AL+ YEKPSANNKV+L+KK FN++MAE+ASV ++NE T+ NQL SV+I F DE+
Sbjct: 84 LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143
Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
A+ +L SLP+SWE M AVSNSTG LK++++ DL +AEEIRR+ + + S GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203
Query: 181 -TRGK----------DKIDEDNEPSSSRKSGKIGM--------------SAASIHIASYR 240
TRG+ K +ED+ ++ + + + S AS H +R
Sbjct: 204 ETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHR 263
Query: 241 SLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN 300
+ ++ G G V + +G G+GDV + G +L VR +P+++ NLIS+G
Sbjct: 264 EIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQ 323
Query: 301 LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
L D+G++ F K+T G++ +A G + TLY
Sbjct: 324 LDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 357
BLAST of Lag0011796 vs. ExPASy TrEMBL
Match:
A0A438C3I2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2500 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 2.0e-53
Identity = 133/334 (39.82%), Postives = 195/334 (58.38%), Query Frame = 0
Query: 1 MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
MQ++DYL RKLH L KP+ M ++W LD + + IR+ LS VA V E
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83
Query: 61 LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
LM+AL+ YEKPSANNKV+L+KK FN++MAE+ASV ++NE T+ NQL SV+I F DE+
Sbjct: 84 LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143
Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
A+ +L SLP+SWE M AVSNSTG LK++++ DL +AEEIRR+ + + S GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203
Query: 181 -TRGK----------DKIDEDNEPSSSRKSGKIGM--------------SAASIHIASYR 240
TRG+ K +ED+ ++ + + + S AS H +R
Sbjct: 204 ETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHR 263
Query: 241 SLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN 300
+ ++ G G V + +G G+GDV + G +L VR +P+++ NLIS+G
Sbjct: 264 EIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQ 323
Query: 301 LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
L D+G++ F K+T G++ +A G + TLY
Sbjct: 324 LDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 357
BLAST of Lag0011796 vs. ExPASy TrEMBL
Match:
A0A438JKL2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2898 PE=4 SV=1)
HSP 1 Score: 219.9 bits (559), Expect = 2.0e-53
Identity = 135/338 (39.94%), Postives = 195/338 (57.69%), Query Frame = 0
Query: 1 MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
MQ++DYL RKLH L KP+ M ++W LD + + IR+ LS VA V E
Sbjct: 24 MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83
Query: 61 LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
LM+AL+ YEKPSANNKV+L+KK FN++MAE+ASV ++NE T+ NQL SV+I F DE+
Sbjct: 84 LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143
Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
+A+ +L SLP+SWE M AVSNSTG LK++++ DL +AEEIRR+ + + S GSAL +
Sbjct: 144 HALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203
Query: 181 -TRGKDKIDEDNE-PSSSRKSGK---------------------------IGMSAASIHI 240
TRG+ N+ S+SR S + + S AS H
Sbjct: 204 ETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTVDSPLDDWVLDSGASFHT 263
Query: 241 ASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLI 300
+R + ++ G G V + +G G+GDV + G +L VR +P+++ NLI
Sbjct: 264 TPHREIIQNYVVGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLI 323
Query: 301 SIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
S+G L D+G++ F K+T G++ +A G + TLY
Sbjct: 324 SVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 361
BLAST of Lag0011796 vs. TAIR 10
Match:
AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )
HSP 1 Score: 58.2 bits (139), Expect = 1.9e-08
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0
Query: 1 MQVKDYLTCRKLHKALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKL 60
M+++DYL +KLH+ L +K + M+ DDW L + + IR+ +S ++A VA E L
Sbjct: 19 MKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAHNVAKEKSPDGL 78
Query: 61 MEALTNRYEKPSANNKV 78
M+ L++ Y+KPS NN V
Sbjct: 79 MKVLSDIYKKPSTNNTV 95
BLAST of Lag0011796 vs. TAIR 10
Match:
AT3G21000.1 (Gag-Pol-related retrotransposon family protein )
HSP 1 Score: 43.1 bits (100), Expect = 6.5e-04
Identity = 24/80 (30.00%), Postives = 37/80 (46.25%), Query Frame = 0
Query: 206 ASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNI 265
A I++ Y FT+ V +G G GDV ++ + G K +R+V FVP +
Sbjct: 286 APINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGL 345
Query: 266 KMNLISIGNLADDGYSCEFG 286
N++S G + YS G
Sbjct: 346 NRNVLSFGKMVSKRYSISTG 365
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
RVW60263.1 | 9.9e-55 | 42.44 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW17147.1 | 8.3e-54 | 41.29 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW73393.1 | 4.1e-53 | 39.82 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVX09487.1 | 4.1e-53 | 39.94 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
RVW17810.1 | 4.1e-53 | 39.82 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |
P10978 | 9.3e-32 | 28.97 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... | [more] |
Match Name | E-value | Identity | Description | |
A0A438FJS0 | 4.8e-55 | 42.44 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438C1P0 | 4.0e-54 | 41.29 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438GME7 | 2.0e-53 | 39.82 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438C3I2 | 2.0e-53 | 39.82 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
A0A438JKL2 | 2.0e-53 | 39.94 | Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... | [more] |
Match Name | E-value | Identity | Description | |
AT3G29785.1 | 1.9e-08 | 40.26 | unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact... | [more] |
AT3G21000.1 | 6.5e-04 | 30.00 | Gag-Pol-related retrotransposon family protein | [more] |