Lag0011796 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011796
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr1: 33071753 .. 33073426 (-)
RNA-Seq ExpressionLag0011796
SyntenyLag0011796
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACGGACGATGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAATTGCGGTTAAATTGATGGAAGCACTTACAAACAGGTATGAAAAACCCTCTGCGAATAATAAAGTCTACCTAGTTAAGAAGTTCTTCAACATGCAAATGGCTGAGGATGCTTCTGTGAATTCCTATATTAATGAAGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGGATTTACTGATGAGGTGAATGCTATTCAGTTATTAACATCTTTACCTGATAGTTGGGAAACGATGGAGACAGCAGTGTCTAATTCGACTGGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGACAGGGTAGTAATAAGGAGTCTACAGTAGGGTCAGCTTTGGCTATGACTAGAGGTAAAGATAAGATTGATGAAGATAATGAACCGAGTAGCAGTAGGAAAAGTGGAAAAATAGGAATGAGGTAGAATGTTTTTACTGCCACAAGAAAGGTCACTTCAAGAGTCAGTGTAGAAAATTTAAAGAGGATCTGAAAAGAAAACACGAGGCAAATACAGTGTATGATGCCTTAGTTTGTGTTGAGAGTGACACAAAATGTAGTAACCATTCATCAGATTGGATATTAGACAGTGCGGCGTCTATACACATAGCTTCATATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTGGAGATAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAACTTGGCAGATGATGGTTACAGTTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGAAGTGGCAGTCGGTCACAGGAAACCTACACTGTACAAATGTAAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGTCGGTTAAAGCTGCAGATGGTTGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCGTGAATCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAATTGGTCAGGTCTCTAGCTTGGCAACAGGTTTGAATAGAGGATTCAAACCATTCTTCTTCGGGAACAGTCGTTCAAGTTGGAAGAAGATAACAGGAGTCACCACTTAGCTGAAGTGGGAGTACGTGTCTGTCTTTTTCGTCTGGGAGACAGATCCACGTAGCTAGCCCATACCTCGAGGCGAGCACAGATAAGCTACAGTTATATTCTGATAGTTGCCTGTTTTTGTGAGTTTTTTGCTTTTCAGGTATTTTGAGTCTTGGAGTTTTACCAAGAAGATCAGAAATAACAGTTGTAGTGGGAATAGATCCTTGGAGTTTGCCAAGATGA

mRNA sequence

ATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACGGACGATGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAATTGCGGTTAAATTGATGGAAGCACTTACAAACAGGTATGAAAAACCCTCTGCGAATAATAAAGTCTACCTAGTTAAGAAGTTCTTCAACATGCAAATGGCTGAGGATGCTTCTGTGAATTCCTATATTAATGAAGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGGATTTACTGATGAGGTGAATGCTATTCAGTTATTAACATCTTTACCTGATAGTTGGGAAACGATGGAGACAGCAGTGTCTAATTCGACTGGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGACAGGGTAGTAATAAGGAGTCTACAGTAGGGTCAGCTTTGGCTATGACTAGAGGTAAAGATAAGATTGATGAAGATAATGAACCGAGTAGCAGTAGGAAAAGTGGAAAAATAGGAATGAGTGCGGCGTCTATACACATAGCTTCATATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTGGAGATAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAACTTGGCAGATGATGGTTACAGTTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGAAGTGGCAGTCGGTCACAGGAAACCTACACTGTACAAATGTAAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGTCGGTTAAAGCTGCAGATGGTTGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCGTGAATCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAATTGGTCAGGTCTCTAGCTTGGCAACAGGTATTTTGAGTCTTGGAGTTTTACCAAGAAGATCAGAAATAACAGTTGTAGTGGGAATAGATCCTTGGAGTTTGCCAAGATGA

Coding sequence (CDS)

ATGCAAGTCAAGGATTATTTAACTTGCAGGAAATTGCATAAGGCACTGAAGGAGAAACCGAAAGAGATGACGGACGATGATTGGGAAGCTCTGGATGAAGAGGCAGTTGCAAGCATAAGGATGTGCTTATCAATGGATGTGGCAAGTCTAGTGGCCCATGAGACAATTGCGGTTAAATTGATGGAAGCACTTACAAACAGGTATGAAAAACCCTCTGCGAATAATAAAGTCTACCTAGTTAAGAAGTTCTTCAACATGCAAATGGCTGAGGATGCTTCTGTGAATTCCTATATTAATGAAGTTACCACTTTGATTAATCAGTTAAAATCTGTTAAGATAGGATTTACTGATGAGGTGAATGCTATTCAGTTATTAACATCTTTACCTGATAGTTGGGAAACGATGGAGACAGCAGTGTCTAATTCGACTGGAAATAATACTTTAAAATTTTCAGAAGTTTGTGATTTAGCCATAGCTGAGGAAATTCGTAGACAGGGTAGTAATAAGGAGTCTACAGTAGGGTCAGCTTTGGCTATGACTAGAGGTAAAGATAAGATTGATGAAGATAATGAACCGAGTAGCAGTAGGAAAAGTGGAAAAATAGGAATGAGTGCGGCGTCTATACACATAGCTTCATATAGGAGTTTGTTCACATCATTCACAGGAGGACATCATGGTCTAGTGAGGATGGGGAATGGTAGAACCTCCAAAACCAGTGGGATTGGAGATGTTAGTCTGAAGACAGAGTGTGGAGATAAATTAGTACTGCGAGATGTCAGATTTGTGCCTAATATCAAGATGAATCTTATTTCTATTGGTAACTTGGCAGATGATGGTTACAGTTGTGAGTTTGGTAGTCGCCAGTGTAAACTCACGTTCGGATCCCAGGAAGTGGCAGTCGGTCACAGGAAACCTACACTGTACAAATGTAAGTTGGATGTTGCCAAAAGATCAAGGAGACAGTGGATGTCGGTTAAAGCTGCAGATGGTTGTTGTAGAGGTACAGTTGAGCCAGCAGCAAGGATAGCCAATTTCGATCAGTCTGATCACGATCCTTCAATTCAGAAACAATTGGGAAGTCCAGGAGATGGCTATCGTGAATCCCCAGTTGTCAGACGCTCGAATGAATTGAAGAAGTCGCTTAGGCGAGTTGAGGCATCAAAGTGGAAGGCCAAAGCAATTGGTCAGGTCTCTAGCTTGGCAACAGGTATTTTGAGTCTTGGAGTTTTACCAAGAAGATCAGAAATAACAGTTGTAGTGGGAATAGATCCTTGGAGTTTGCCAAGATGA

Protein sequence

MQVKDYLTCRKLHKALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEVNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAMTRGKDKIDEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLYKCKLDVAKRSRRQWMSVKAADGCCRGTVEPAARIANFDQSDHDPSIQKQLGSPGDGYRESPVVRRSNELKKSLRRVEASKWKAKAIGQVSSLATGILSLGVLPRRSEITVVVGIDPWSLPR
Homology
BLAST of Lag0011796 vs. NCBI nr
Match: RVW60263.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 225.3 bits (573), Expect = 9.9e-55
Identity = 132/311 (42.44%), Postives = 191/311 (61.41%), Query Frame = 0

Query: 1   MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
           MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
           LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++NE  T+ NQL SV+I F DE+
Sbjct: 84  LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143

Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
            A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203

Query: 181 -TRGKDKI-DEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSK 240
            TRG++++ D       S     +  S AS H   +R +  ++  G  G V + +G    
Sbjct: 204 ETRGREEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALD 263

Query: 241 TSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQE 300
             G+GDV +    G   +L  VR +P+++ NLIS+G L D+G++  F     K+T G++ 
Sbjct: 264 VVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARV 323

Query: 301 VAVGHRKPTLY 309
           +A G +  TLY
Sbjct: 324 LARGKKTGTLY 334

BLAST of Lag0011796 vs. NCBI nr
Match: RVW17147.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 222.2 bits (565), Expect = 8.3e-54
Identity = 128/310 (41.29%), Postives = 184/310 (59.35%), Query Frame = 0

Query: 1   MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
           MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
           LM+ L+  YEKPSANNKV+L+KK FN++M E+ASV  ++NE  T+ NQL SV+I F DE+
Sbjct: 84  LMKVLSGMYEKPSANNKVHLMKKLFNLKMTENASVAQHLNEFNTITNQLSSVEIDFDDEI 143

Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
            A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203

Query: 181 -TRGKDKIDEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKT 240
            TRG+      N+              AS H   +R +  ++  G  G V + +G     
Sbjct: 204 ETRGRGNNRNSNQ-------------GASFHTTPHREIIQNYVAGDFGKVYLADGSALDV 263

Query: 241 SGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEV 300
            G+GDV +    G   +L  VR +P+++ NLIS+G L D+G++  F     K+T G++ +
Sbjct: 264 VGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 320

Query: 301 AVGHRKPTLY 309
           A G +  TLY
Sbjct: 324 ARGKKTGTLY 320

BLAST of Lag0011796 vs. NCBI nr
Match: RVW73393.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 219.9 bits (559), Expect = 4.1e-53
Identity = 133/334 (39.82%), Postives = 195/334 (58.38%), Query Frame = 0

Query: 1   MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
           MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
           LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++NE  T+ NQL SV+I F DE+
Sbjct: 84  LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143

Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
            A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203

Query: 181 -TRGK----------DKIDEDNEPSSSRKSGKIGM--------------SAASIHIASYR 240
            TRG+           K +ED+  ++  +  +  +              S AS H   +R
Sbjct: 204 ETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHR 263

Query: 241 SLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN 300
            +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G 
Sbjct: 264 EIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQ 323

Query: 301 LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
           L D+G++  F     K+T G++ +A G +  TLY
Sbjct: 324 LDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 357

BLAST of Lag0011796 vs. NCBI nr
Match: RVX09487.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 219.9 bits (559), Expect = 4.1e-53
Identity = 135/338 (39.94%), Postives = 195/338 (57.69%), Query Frame = 0

Query: 1   MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
           MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
           LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++NE  T+ NQL SV+I F DE+
Sbjct: 84  LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143

Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
           +A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL +
Sbjct: 144 HALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203

Query: 181 -TRGKDKIDEDNE-PSSSRKSGK---------------------------IGMSAASIHI 240
            TRG+      N+  S+SR S +                           +  S AS H 
Sbjct: 204 ETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTVDSPLDDWVLDSGASFHT 263

Query: 241 ASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLI 300
             +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLI
Sbjct: 264 TPHREIIQNYVVGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLI 323

Query: 301 SIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
           S+G L D+G++  F     K+T G++ +A G +  TLY
Sbjct: 324 SVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 361

BLAST of Lag0011796 vs. NCBI nr
Match: RVW17810.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 219.9 bits (559), Expect = 4.1e-53
Identity = 133/334 (39.82%), Postives = 195/334 (58.38%), Query Frame = 0

Query: 1   MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
           MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
           LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++NE  T+ NQL SV+I F DE+
Sbjct: 84  LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143

Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
            A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203

Query: 181 -TRGK----------DKIDEDNEPSSSRKSGKIGM--------------SAASIHIASYR 240
            TRG+           K +ED+  ++  +  +  +              S AS H   +R
Sbjct: 204 ETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHR 263

Query: 241 SLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN 300
            +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G 
Sbjct: 264 EIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQ 323

Query: 301 LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
           L D+G++  F     K+T G++ +A G +  TLY
Sbjct: 324 LDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 357

BLAST of Lag0011796 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 9.3e-32
Identity = 113/390 (28.97%), Postives = 179/390 (45.90%), Query Frame = 0

Query: 2   QVKDYLTCRKLHKAL---KEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAV 61
           +++D L  + LHK L    +KP  M  +DW  LDE A ++IR+ LS DV + +  E  A 
Sbjct: 23  RMRDLLIQQGLHKVLDVDSKKPDTMKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTAR 82

Query: 62  KLMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDE 121
            +   L + Y   +  NK+YL K+ + + M+E  +  S++N    LI QL ++ +   +E
Sbjct: 83  GIWTRLESLYMSKTLTNKLYLKKQLYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEE 142

Query: 122 VNAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCD-LAIAEEIRRQGSN--------- 181
             AI LL SLP S++ + T + +  G  T++  +V   L + E++R++  N         
Sbjct: 143 DKAILLLNSLPSSYDNLATTILH--GKTTIELKDVTSALLLNEKMRKKPENQGQALITEG 202

Query: 182 ---------------------------------------------------KESTVG--- 241
                                                              K  T G   
Sbjct: 203 RGRSYQRSSNNYGRSGARGKSKNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKN 262

Query: 242 --SALAMTRGKDKI------DEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHG 301
             +  AM +  D +      +E+    S  +S  +  +AAS H    R LF  +  G  G
Sbjct: 263 DDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFG 322

Query: 302 LVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGS 317
            V+MGN   SK +GIGD+ +KT  G  LVL+DVR VP+++MNLIS   L  DGY   F +
Sbjct: 323 TVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYFAN 382

BLAST of Lag0011796 vs. ExPASy TrEMBL
Match: A0A438FJS0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_4031 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 4.8e-55
Identity = 132/311 (42.44%), Postives = 191/311 (61.41%), Query Frame = 0

Query: 1   MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
           MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
           LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++NE  T+ NQL SV+I F DE+
Sbjct: 84  LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143

Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
            A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203

Query: 181 -TRGKDKI-DEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSK 240
            TRG++++ D       S     +  S AS H   +R +  ++  G  G V + +G    
Sbjct: 204 ETRGREEVQDALLLAVDSPLDDWVLDSGASFHTTPHREIIQNYVAGDFGKVYLADGSALD 263

Query: 241 TSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQE 300
             G+GDV +    G   +L  VR +P+++ NLIS+G L D+G++  F     K+T G++ 
Sbjct: 264 VVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARV 323

Query: 301 VAVGHRKPTLY 309
           +A G +  TLY
Sbjct: 324 LARGKKTGTLY 334

BLAST of Lag0011796 vs. ExPASy TrEMBL
Match: A0A438C1P0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1540 PE=4 SV=1)

HSP 1 Score: 222.2 bits (565), Expect = 4.0e-54
Identity = 128/310 (41.29%), Postives = 184/310 (59.35%), Query Frame = 0

Query: 1   MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
           MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
           LM+ L+  YEKPSANNKV+L+KK FN++M E+ASV  ++NE  T+ NQL SV+I F DE+
Sbjct: 84  LMKVLSGMYEKPSANNKVHLMKKLFNLKMTENASVAQHLNEFNTITNQLSSVEIDFDDEI 143

Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
            A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203

Query: 181 -TRGKDKIDEDNEPSSSRKSGKIGMSAASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKT 240
            TRG+      N+              AS H   +R +  ++  G  G V + +G     
Sbjct: 204 ETRGRGNNRNSNQ-------------GASFHTTPHREIIQNYVAGDFGKVYLADGSALDV 263

Query: 241 SGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGNLADDGYSCEFGSRQCKLTFGSQEV 300
            G+GDV +    G   +L  VR +P+++ NLIS+G L D+G++  F     K+T G++ +
Sbjct: 264 VGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVL 320

Query: 301 AVGHRKPTLY 309
           A G +  TLY
Sbjct: 324 ARGKKTGTLY 320

BLAST of Lag0011796 vs. ExPASy TrEMBL
Match: A0A438GME7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_3541 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.0e-53
Identity = 133/334 (39.82%), Postives = 195/334 (58.38%), Query Frame = 0

Query: 1   MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
           MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
           LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++NE  T+ NQL SV+I F DE+
Sbjct: 84  LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143

Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
            A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203

Query: 181 -TRGK----------DKIDEDNEPSSSRKSGKIGM--------------SAASIHIASYR 240
            TRG+           K +ED+  ++  +  +  +              S AS H   +R
Sbjct: 204 ETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHR 263

Query: 241 SLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN 300
            +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G 
Sbjct: 264 EIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQ 323

Query: 301 LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
           L D+G++  F     K+T G++ +A G +  TLY
Sbjct: 324 LDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 357

BLAST of Lag0011796 vs. ExPASy TrEMBL
Match: A0A438C3I2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2500 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.0e-53
Identity = 133/334 (39.82%), Postives = 195/334 (58.38%), Query Frame = 0

Query: 1   MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
           MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
           LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++NE  T+ NQL SV+I F DE+
Sbjct: 84  LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143

Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
            A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL +
Sbjct: 144 RALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203

Query: 181 -TRGK----------DKIDEDNEPSSSRKSGKIGM--------------SAASIHIASYR 240
            TRG+           K +ED+  ++  +  +  +              S AS H   +R
Sbjct: 204 ETRGRGHFKRQCKSPKKKNEDDSANAVTEEVQDALLLAVDSPLDDWVLDSGASFHTTPHR 263

Query: 241 SLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLISIGN 300
            +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLIS+G 
Sbjct: 264 EIIQNYVAGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLISVGQ 323

Query: 301 LADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
           L D+G++  F     K+T G++ +A G +  TLY
Sbjct: 324 LDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 357

BLAST of Lag0011796 vs. ExPASy TrEMBL
Match: A0A438JKL2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2898 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 2.0e-53
Identity = 135/338 (39.94%), Postives = 195/338 (57.69%), Query Frame = 0

Query: 1   MQVKDYLTCRKLH-KALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVK 60
           MQ++DYL  RKLH   L  KP+ M  ++W  LD + +  IR+ LS  VA  V  E     
Sbjct: 24  MQIEDYLYGRKLHLPLLGTKPESMKAEEWALLDRQVLGVIRLTLSRSVAHNVVKEKTTAD 83

Query: 61  LMEALTNRYEKPSANNKVYLVKKFFNMQMAEDASVNSYINEVTTLINQLKSVKIGFTDEV 120
           LM+AL+  YEKPSANNKV+L+KK FN++MAE+ASV  ++NE  T+ NQL SV+I F DE+
Sbjct: 84  LMKALSGMYEKPSANNKVHLMKKLFNLKMAENASVAQHLNEFNTITNQLSSVEIDFDDEI 143

Query: 121 NAIQLLTSLPDSWETMETAVSNSTGNNTLKFSEVCDLAIAEEIRRQGSNKESTVGSALAM 180
           +A+ +L SLP+SWE M  AVSNSTG   LK++++ DL +AEEIRR+ + + S  GSAL +
Sbjct: 144 HALIVLASLPNSWEAMRMAVSNSTGKEKLKYNDIRDLILAEEIRRRDAGETSGSGSALNL 203

Query: 181 -TRGKDKIDEDNE-PSSSRKSGK---------------------------IGMSAASIHI 240
            TRG+      N+  S+SR S +                           +  S AS H 
Sbjct: 204 ETRGRGNNRNSNQGRSNSRNSNRNRSKSRSGQQVQCWNCGKTVDSPLDDWVLDSGASFHT 263

Query: 241 ASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNIKMNLI 300
             +R +  ++  G  G V + +G      G+GDV +    G   +L  VR +P+++ NLI
Sbjct: 264 TPHREIIQNYVVGDFGKVYLADGSALDVVGLGDVRISLPNGSVWLLEKVRHIPDLRRNLI 323

Query: 301 SIGNLADDGYSCEFGSRQCKLTFGSQEVAVGHRKPTLY 309
           S+G L D+G++  F     K+T G++ +A G +  TLY
Sbjct: 324 SVGQLDDEGHAILFVGGTWKVTKGARVLARGKKTGTLY 361

BLAST of Lag0011796 vs. TAIR 10
Match: AT3G29785.1 (unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 1.9e-08
Identity = 31/77 (40.26%), Postives = 49/77 (63.64%), Query Frame = 0

Query: 1  MQVKDYLTCRKLHKALKEKPKEMTDDDWEALDEEAVASIRMCLSMDVASLVAHETIAVKL 60
          M+++DYL  +KLH+ L +K + M+ DDW  L  + +  IR+ +S ++A  VA E     L
Sbjct: 19 MKIEDYLYGKKLHQPLGKKVETMSQDDWNILYRQVLDVIRLTISKNIAHNVAKEKSPDGL 78

Query: 61 MEALTNRYEKPSANNKV 78
          M+ L++ Y+KPS NN V
Sbjct: 79 MKVLSDIYKKPSTNNTV 95

BLAST of Lag0011796 vs. TAIR 10
Match: AT3G21000.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 43.1 bits (100), Expect = 6.5e-04
Identity = 24/80 (30.00%), Postives = 37/80 (46.25%), Query Frame = 0

Query: 206 ASIHIASYRSLFTSFTGGHHGLVRMGNGRTSKTSGIGDVSLKTECGDKLVLRDVRFVPNI 265
           A I++  Y   FT+        V   +G      G GDV ++ + G K  +R+V FVP +
Sbjct: 286 APINMTPYVKYFTTLDRTFKATVGTVDGTVLLVEGKGDVKIRMKEGKKKTIRNVIFVPGL 345

Query: 266 KMNLISIGNLADDGYSCEFG 286
             N++S G +    YS   G
Sbjct: 346 NRNVLSFGKMVSKRYSISTG 365

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RVW60263.19.9e-5542.44Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW17147.18.3e-5441.29Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW73393.14.1e-5339.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVX09487.14.1e-5339.94Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW17810.14.1e-5339.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
Match NameE-valueIdentityDescription
P109789.3e-3228.97Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A438FJS04.8e-5542.44Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438C1P04.0e-5441.29Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438GME72.0e-5339.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438C3I22.0e-5339.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438JKL22.0e-5339.94Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
Match NameE-valueIdentityDescription
AT3G29785.11.9e-0840.26unknown protein; Has 90 Blast hits to 90 proteins in 7 species: Archae - 0; Bact... [more]
AT3G21000.16.5e-0430.00Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePFAMPF14223Retrotran_gag_2coord: 28..165
e-value: 1.5E-25
score: 89.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 348..368
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..200
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 181..195
NoneNo IPR availablePANTHERPTHR34676:SF1ZINC FINGER, CCHC-TYPE, TUBBY C-TERMINAL-LIKE DOMAIN PROTEIN-RELATEDcoord: 1..187
NoneNo IPR availablePANTHERPTHR34676FAMILY NOT NAMEDcoord: 1..187

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011796.1Lag0011796.1mRNA