Lag0011762 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011762
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Peptidase A1 domain-containing protein
Location	chr1: 32442859 .. 32443311 (-)
RNA-Seq Expression	Lag0011762
Synteny	Lag0011762

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTTCTCCCCATTCCCTTTCTCTTTTCCATCTTTCTCCTTCTTTCCACTTCATCTTCTTCCTCCAGTTCCCTCATCACAATCCCCCTCACCACCTTCCCTTCAATTCCAGTTACAGATCTATGGCAGAACATTAATTACCTCGTCTCTGCTTCACTCACCAGAGCTCATCACCTCAAGAGGCCGCGAACGAATCCAAACAGTTCCATCGAGAAAGTCTCTATGTTCTCTCGTAGCTATGTAGCTTATTCAATCTCCCTCAGCTTTGGAACTCCATCGCAGAATTTGTTGTTCGTGTTCGATACTGGAAGTAGCCTCGTCTGGTTCCCCTACACTGTCGGTTGTCTCTGTTCCAATTCTTCGTTTCCGAACTCAGACGATTGCGAAGTTTATCCCCAAATTATCTTCCTCTGTGAAGATCGTCGGTTGCTGAAATCGACGGAAAGGTGA

mRNA sequence

ATGGAGTTTCTCCCCATTCCCTTTCTCTTTTCCATCTTTCTCCTTCTTTCCACTTCATCTTCTTCCTCCAGTTCCCTCATCACAATCCCCCTCACCACCTTCCCTTCAATTCCAGTTACAGATCTATGGCAGAACATTAATTACCTCGTCTCTGCTTCACTCACCAGAGCTCATCACCTCAAGAGGCCGCGAACGAATCCAAACAGTTCCATCGAGAAAGTCTCTATGTTCTCTCGTAGCTATGTAGCTTATTCAATCTCCCTCAGCTTTGGAACTCCATCGCAGAATTTGTTGTTCGTGTTCGATACTGGAAGTAGCCTCGTCTGGTTCCCCTACACTGTCGGTTGTCTCTGTTCCAATTCTTCGTTTCCGAACTCAGACGATTGCGAAGTTTATCCCCAAATTATCTTCCTCTGTGAAGATCGTCGGTTGCTGAAATCGACGGAAAGGTGA

Coding sequence (CDS)

ATGGAGTTTCTCCCCATTCCCTTTCTCTTTTCCATCTTTCTCCTTCTTTCCACTTCATCTTCTTCCTCCAGTTCCCTCATCACAATCCCCCTCACCACCTTCCCTTCAATTCCAGTTACAGATCTATGGCAGAACATTAATTACCTCGTCTCTGCTTCACTCACCAGAGCTCATCACCTCAAGAGGCCGCGAACGAATCCAAACAGTTCCATCGAGAAAGTCTCTATGTTCTCTCGTAGCTATGTAGCTTATTCAATCTCCCTCAGCTTTGGAACTCCATCGCAGAATTTGTTGTTCGTGTTCGATACTGGAAGTAGCCTCGTCTGGTTCCCCTACACTGTCGGTTGTCTCTGTTCCAATTCTTCGTTTCCGAACTCAGACGATTGCGAAGTTTATCCCCAAATTATCTTCCTCTGTGAAGATCGTCGGTTGCTGAAATCGACGGAAAGGTGA

Protein sequence

MEFLPIPFLFSIFLLLSTSSSSSSSLITIPLTTFPSIPVTDLWQNINYLVSASLTRAHHLKRPRTNPNSSIEKVSMFSRSYVAYSISLSFGTPSQNLLFVFDTGSSLVWFPYTVGCLCSNSSFPNSDDCEVYPQIIFLCEDRRLLKSTER

Homology

[Close]

BLAST of Lag0011762 vs. NCBI nr
Match: XP_023543736.1 (probable aspartyl protease At4g16563 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 169.9 bits (429), Expect = 1.7e-38
Identity = 88/127 (69.29%), Postives = 100/127 (78.74%), Query Frame = 0


Query: 1   MEFLPIPFLFSIFLLLSTSSSSSSSLITIPLTTFPSIPVTDLWQNINYLVSASLTRAHHL 60
           MEF PIPFL SI LLLS SSSSSS+ +T+PLT FPS+P T  W+NI +LVSASLTRA HL
Sbjct: 1   MEFFPIPFLLSIVLLLSASSSSSSTTVTLPLTVFPSLPFTHPWKNIKHLVSASLTRAQHL 60

Query: 61  KRPRTNPNSSIEKVSMFSRSYVAYSISLSFGTPSQNLLFVFDTGSSLVWFPYTVGCLCSN 120
           K PR   N+SI+ V++F RSY AYSISL+FGTP Q+L  VFDTGSSLVWFP T G  CSN
Sbjct: 61  KTPRIKSNTSIQNVALFPRSYGAYSISLAFGTPPQSLSLVFDTGSSLVWFPCTAGYRCSN 120

Query: 121 SSFPNSD 128
            SFPN D
Sbjct: 121 CSFPNVD 127

[Close]

BLAST of Lag0011762 vs. NCBI nr
Match: XP_022979057.1 (probable aspartyl protease At4g16563 [Cucurbita maxima])

HSP 1 Score: 168.3 bits (425), Expect = 5.0e-38
Identity = 90/150 (60.00%), Postives = 106/150 (70.67%), Query Frame = 0


Query: 1   MEFLPIPFLFSIFLLLSTSSSSSSSLITIPLTTFPSIPVTDLWQNINYLVSASLTRAHHL 60
           MEF PI FL SI LLLS SSSSSS  +T+PLT FPS+P+T  W+NI +LVSASL RA HL
Sbjct: 1   MEFFPIQFLLSIVLLLSASSSSSSITVTLPLTAFPSLPLTHPWKNIKHLVSASLARAQHL 60

Query: 61  KRPRTNPNSSIEKVSMFSRSYVAYSISLSFGTPSQNLLFVFDTGSSLVWFPYTVGCLCSN 120
           K P+T  N+SI+ V++F RSY AYSISL+FGTP Q+L  VFDTGSSLVWFP T G  CSN
Sbjct: 61  KTPKTKSNTSIQNVALFPRSYGAYSISLAFGTPPQSLSLVFDTGSSLVWFPCTAGYRCSN 120

Query: 121 SSFPNSDDCEVYPQIIFLCEDRRLLKSTER 151
            SFPN D   +   I  L    R++    R
Sbjct: 121 CSFPNVDAATIPKFIPKLSSSARIIGCRNR 150

[Close]

BLAST of Lag0011762 vs. NCBI nr
Match: XP_022925946.1 (probable aspartyl protease At4g16563 [Cucurbita moschata] >KAG6604319.1 Aspartic proteinase nepenthesin-1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 87/127 (68.50%), Postives = 99/127 (77.95%), Query Frame = 0


Query: 1   MEFLPIPFLFSIFLLLSTSSSSSSSLITIPLTTFPSIPVTDLWQNINYLVSASLTRAHHL 60
           MEF  IPFL SI LLLS SSSSSS+ +T+PLT FPS+P    W+NI +LVSASLTRA HL
Sbjct: 1   MEFFLIPFLLSIVLLLSASSSSSSTTVTLPLTVFPSLPFAHPWKNIKHLVSASLTRAQHL 60

Query: 61  KRPRTNPNSSIEKVSMFSRSYVAYSISLSFGTPSQNLLFVFDTGSSLVWFPYTVGCLCSN 120
           K PRT  N+SI+ V++F RSY AYSISL+FGTP Q+L  VFDTGSSLVWFP T G  CSN
Sbjct: 61  KTPRTKSNTSIQNVALFPRSYGAYSISLAFGTPPQSLSLVFDTGSSLVWFPCTAGYRCSN 120

Query: 121 SSFPNSD 128
            SFPN D
Sbjct: 121 CSFPNVD 127

[Close]

BLAST of Lag0011762 vs. NCBI nr
Match: XP_038881211.1 (probable aspartyl protease At4g16563 [Benincasa hispida])

HSP 1 Score: 166.0 bits (419), Expect = 2.5e-37
Identity = 93/128 (72.66%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 1   MEFLPIPFLFSIFLLLSTSSSSSSSLITIPLTTFPSIPVT-DLWQNINYLVSASLTRAHH 60
           MEF PIPFLFSIFLLL TSSSSS S IT+PLT FPSIP+T D  + INYL+SASL RA H
Sbjct: 1   MEFFPIPFLFSIFLLLPTSSSSSISTITLPLTAFPSIPLTDDPLKIINYLLSASLNRAQH 60

Query: 61  LKRPRTNPNSSIEKVSMFSRSYVAYSISLSFGTPSQNLLFVFDTGSSLVWFPYTVGCLCS 120
           LK P+T    SI+ VS+FSRSY AYSI+L+FGTP QNL FVFDTGSSLVWFP T G  CS
Sbjct: 61  LKNPQT---KSIQNVSLFSRSYGAYSITLAFGTPPQNLSFVFDTGSSLVWFPCTAGYRCS 120

Query: 121 NSSFPNSD 128
           N SFPN D
Sbjct: 121 NCSFPNVD 125

[Close]

BLAST of Lag0011762 vs. NCBI nr
Match: TYK07446.1 (aspartic proteinase nepenthesin-2-like [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 3.2e-37
Identity = 87/131 (66.41%), Postives = 104/131 (79.39%), Query Frame = 0


Query: 1   MEFLPIPFLFSIFLLLSTSSSSSSSLITIPLTTFPSIPVTDLWQNINYLVSASLTRAHHL 60
           MEFLPIPFLFSIFLLL TSSSSS   IT+PLTTFPSIP TD  + IN+L+SASL+RA HL
Sbjct: 1   MEFLPIPFLFSIFLLLPTSSSSS---ITLPLTTFPSIPFTDPLKTINHLLSASLSRAQHL 60

Query: 61  KRPRTNPNSSIEKVSMFSRSYVAYSISLSFGTPSQNLLFVFDTGSSLVWFPYTVGCLCSN 120
           K P++  N+S E VS+F RSY AY++SL+FGTP QNL F+FDTGSSLVWFP T G  C++
Sbjct: 61  KSPQSKSNTSTENVSLFPRSYGAYAVSLAFGTPPQNLSFIFDTGSSLVWFPCTAGYRCAH 120

Query: 121 SSFPNSDDCEV 132
            SFP+ D   +
Sbjct: 121 CSFPHVDPATI 128

The following BLAST results are available for this feature:

BLAST of Lag0011762 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023543736.1	1.7e-38	69.29	probable aspartyl protease At4g16563 [Cucurbita pepo subsp. pepo]	[more]
XP_022979057.1	5.0e-38	60.00	probable aspartyl protease At4g16563 [Cucurbita maxima]	[more]
XP_022925946.1	1.9e-37	68.50	probable aspartyl protease At4g16563 [Cucurbita moschata] >KAG6604319.1 Aspartic...	[more]
XP_038881211.1	2.5e-37	72.66	probable aspartyl protease At4g16563 [Benincasa hispida]	[more]
TYK07446.1	3.2e-37	66.41	aspartic proteinase nepenthesin-2-like [Cucumis melo var. makuwa]	[more]

BLAST of Lag0011762 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 41..141 e-value: 2.6E-10 score: 42.4
IPR021109	Aspartic peptidase domain superfamily	SUPERFAMILY	50630	Acid proteases	coord: 9..119
IPR033121	Peptidase family A1 domain	PFAM	PF00026	Asp	coord: 84..118 e-value: 1.3E-5 score: 24.8
IPR033121	Peptidase family A1 domain	PROSITE	PS51767	PEPTIDASE_A1	coord: 84..150 score: 12.326554
None	No IPR available	PANTHER	PTHR13683:SF712	ASPARTIC PROTEINASE NEPENTHESIN-2-LIKE	coord: 10..129
IPR001461	Aspartic peptidase A1 family	PANTHER	PTHR13683	ASPARTYL PROTEASES	coord: 10..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011762.1	Lag0011762.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0004190	aspartic-type endopeptidase activity