Lag0011755 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011755
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	AA_kinase domain-containing protein
Location	chr1: 32313564 .. 32314162 (+)
RNA-Seq Expression	Lag0011755
Synteny	Lag0011755

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAAGGCTCTACTTCTTTGTTTGTTCGTGGACACTATGTCTCTTTTGACTTCCAAACCATCACTCGTTTCTATGGACTACCCAATATTGATAGGGATGACTACAACACATACCTTAATGGCCATTTAGACGTTAATCAGGTCATCCAGACGGTATGTAGGTCAGGGGCTGAATGGGCAATGAACGGAGGGGAGGTTTATTTTAAAACCACCGACCTATTTGTAGATTACAGGGCATAACACACTTTTATATGTGCCAAGTTGATGCCTGTGGCGCACCTTAGCGATGGCCATCCTTTTGTTTGCCATCGCCATAGGCCGCTCCGTGAACGTCGACCACGTCATTTATCACTCCATTCGCCGGCGTAGCACGACAGTAGGGCTCGATCATCCGTCATTGATTACTGCCCTTTGTCGAGCAGCTGGTGTCGTATGGGACTCCCAGGAGGAGTTGGTCCACCTCGGGGCGATTATTGATAAGAATTTCATCCCGAGGGCCTGAACCACAGGGTGCACAACCTGCTCTGCCCATTCTTGAGCCACCAGAGTATCCTGAAGAGGAGGTCCCGCCTCCATCCATTGAGGAGCAGATGTAG

mRNA sequence

ATGAAAGAAGGCTCTACTTCTTTGTTTGTTCGTGGACACTATGTCTCTTTTGACTTCCAAACCATCACTCGTTTCTATGGACTACCCAATATTGATAGGGATGACTACAACACATACCTTAATGGCCATTTAGACGTTAATCAGGTCATCCAGACGGTATGTAGGTCAGGGGCTGAATGGGCAATGAACGGAGGGGAGCTGGTGTCGTATGGGACTCCCAGGAGGAGTTGGTCCACCTCGGGGCGATTATTGATAAGAATTTCATCCCGAGGGCCTGAACCACAGGGTGCACAACCTGCTCTGCCCATTCTTGAGCCACCAGAGTATCCTGAAGAGGAGGTCCCGCCTCCATCCATTGAGGAGCAGATGTAG

Coding sequence (CDS)

ATGAAAGAAGGCTCTACTTCTTTGTTTGTTCGTGGACACTATGTCTCTTTTGACTTCCAAACCATCACTCGTTTCTATGGACTACCCAATATTGATAGGGATGACTACAACACATACCTTAATGGCCATTTAGACGTTAATCAGGTCATCCAGACGGTATGTAGGTCAGGGGCTGAATGGGCAATGAACGGAGGGGAGCTGGTGTCGTATGGGACTCCCAGGAGGAGTTGGTCCACCTCGGGGCGATTATTGATAAGAATTTCATCCCGAGGGCCTGAACCACAGGGTGCACAACCTGCTCTGCCCATTCTTGAGCCACCAGAGTATCCTGAAGAGGAGGTCCCGCCTCCATCCATTGAGGAGCAGATGTAG

Protein sequence

MKEGSTSLFVRGHYVSFDFQTITRFYGLPNIDRDDYNTYLNGHLDVNQVIQTVCRSGAEWAMNGGELVSYGTPRRSWSTSGRLLIRISSRGPEPQGAQPALPILEPPEYPEEEVPPPSIEEQM

Homology

[Close]

BLAST of Lag0011755 vs. NCBI nr
Match: KGN46897.1 (hypothetical protein Csa_020731 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 36/70 (51.43%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 1   MKEGSTSLFVRGHYVSFDFQTITRFYGLPNIDRDDYNTYLNGHLDVNQVIQTVCRSGAEW 60
           M EGS+  FVRG  VSFD+ TI R+Y LPN +RD+Y+ Y + H+DV+Q+I+ +C+ GAEW
Sbjct: 89  MVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYDIYASEHVDVHQIIRELCQPGAEW 148

Query: 61  AMNGGELVSY 71
            +N GE + +
Sbjct: 149 VINPGEPIRF 158

[Close]

BLAST of Lag0011755 vs. NCBI nr
Match: KAA0033353.1 (putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa] >TYJ96637.1 putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa])

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-13
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1   MKEGSTSLFVRGHYVSFDFQTITRFYGLPNIDRDDYNTYLNGHLDVNQVIQTVCRSGAEW 60
           M EGS+  FVRG  VSFD+ TI R+Y LPN +RD+Y  Y + H+DV+Q+I+ +C+ GAEW
Sbjct: 89  MVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAIYASEHVDVHQIIRELCQPGAEW 148

Query: 61  AMNGGELVSY 71
            +N GE + +
Sbjct: 149 IINPGEPIRF 158

[Close]

BLAST of Lag0011755 vs. NCBI nr
Match: XP_008458668.1 (PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo])

HSP 1 Score: 85.1 bits (209), Expect = 4.6e-13
Identity = 36/70 (51.43%), Postives = 51/70 (72.86%), Query Frame = 0


Query: 1  MKEGSTSLFVRGHYVSFDFQTITRFYGLPNIDRDDYNTYLNGHLDVNQVIQTVCRSGAEW 60
          M EGS+  FVRG  VSFD+ TI R+Y LPN +RD+Y  Y + H+DV+Q+I+ +C+ GAEW
Sbjct: 27 MVEGSSRSFVRGRQVSFDYGTINRYYHLPNFERDEYAIYASEHVDVHQIIRELCQPGAEW 86

Query: 61 AMNGGELVSY 71
           +N GE + +
Sbjct: 87 IINPGEPIRF 96

[Close]

BLAST of Lag0011755 vs. NCBI nr
Match: EOY13933.1 (Uncharacterized protein TCM_032752 [Theobroma cacao])

HSP 1 Score: 64.3 bits (155), Expect = 8.3e-07
Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0


Query: 9   FVRGHYVSFDFQTITRFYGLPNIDRDDYNTYLNGHLDVNQVIQTVCRSGAEWAMNGGELV 68
           FVRG +V F  Q I      PNI+ D+Y  YL  H D N++I T+C  GA+W  + GE V
Sbjct: 93  FVRGKHVPFHSQAINELLRTPNIENDEYGQYLGDHQDCNEIISTLCIEGAQWKTSHGEPV 152

Query: 69  SY 71
           S+
Sbjct: 153 SF 154

[Close]

BLAST of Lag0011755 vs. NCBI nr
Match: EOY19052.1 (Uncharacterized protein TCM_043710 [Theobroma cacao])

HSP 1 Score: 60.1 bits (144), Expect = 1.6e-05
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0


Query: 9   FVRGHYVSFDFQTITRFYGLPNIDRDDYNTYLNGHLDVNQVIQTVCRSGAEWAMNGGELV 68
           F +   V F  QTI +FY LPNI  D+Y  YL  ++D+++VI  +C  G +W MN G L+
Sbjct: 519 FEQPEVVCFASQTINQFYNLPNIKSDEYGQYLAINVDLHEVIGLLCNEGTKWKMNKGVLL 578

Query: 69  SY 71
           S+
Sbjct: 579 SF 580

The following BLAST results are available for this feature:

BLAST of Lag0011755 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46897.1	1.6e-13	51.43	hypothetical protein Csa_020731 [Cucumis sativus]	[more]
KAA0033353.1	4.6e-13	51.43	putative S-locus lectin protein kinase family protein [Cucumis melo var. makuwa]...	[more]
XP_008458668.1	4.6e-13	51.43	PREDICTED: uncharacterized protein LOC103497996 [Cucumis melo]	[more]
EOY13933.1	8.3e-07	45.16	Uncharacterized protein TCM_032752 [Theobroma cacao]	[more]
EOY19052.1	1.6e-05	43.55	Uncharacterized protein TCM_043710 [Theobroma cacao]	[more]

BLAST of Lag0011755 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 99..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011755.1	Lag0011755.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006561	proline biosynthetic process
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005488	binding
molecular_function	GO:0004349	glutamate 5-kinase activity