Lag0011727 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011727
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDBD_Tnp_Mut domain-containing protein
Locationchr1: 31732290 .. 31732736 (+)
RNA-Seq ExpressionLag0011727
SyntenyLag0011727
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTCCTTAATTCCGAACGAACACAATCCAAACCAAGTAGTCTGCAACATTGGTCAACTTAATGGTGAAGCGAGAATGTACTTAATTGATTGGTATCATACCTCTAGTGATGATTCTGAAGGTGTGGAAAGAGGTGAAGAGTCAAACGACAGTGATGAGAGACCAACTTCACCCAATTTAGAATTAGATATGCAGGTTGAGATTGAAGGGGAGGTTGAGTCGGTTTATGGGTCAGAGAATATCCTAAATAATCCACATAATTCTGATGGGGAGGAAGTGGATGGAGCACCAGAGTTTAGGGTTGAGACTGATCTAGATCATATTCGATTTTGTGTTGGTATGAAATTTAGTAGTTCTAAAATCTTAAAAGATGCTATAAAGGACTATGCACTTAAGGAGTCTTACAATGTGAAGCTAAAAAAGAATGATGCTATAAAATCCTAA

mRNA sequence

ATGGTTTCCTTAATTCCGAACGAACACAATCCAAACCAAGTAGTCTGCAACATTGGTCAACTTAATGGTGAAGCGAGAATGTACTTAATTGATTGGTATCATACCTCTAGTGATGATTCTGAAGGTGTGGAAAGAGGTGAAGAGTCAAACGACAGTGATGAGAGACCAACTTCACCCAATTTAGAATTAGATATGCAGGTTGAGATTGAAGGGGAGGTTGAGTCGGTTTATGGGTCAGAGAATATCCTAAATAATCCACATAATTCTGATGGGGAGGAAGTGGATGGAGCACCAGAGTTTAGGGTTGAGACTGATCTAGATCATATTCGATTTTGTGTTGGTATGAAATTTAGTAGTTCTAAAATCTTAAAAGATGCTATAAAGGACTATGCACTTAAGGAGTCTTACAATGTGAAGCTAAAAAAGAATGATGCTATAAAATCCTAA

Coding sequence (CDS)

ATGGTTTCCTTAATTCCGAACGAACACAATCCAAACCAAGTAGTCTGCAACATTGGTCAACTTAATGGTGAAGCGAGAATGTACTTAATTGATTGGTATCATACCTCTAGTGATGATTCTGAAGGTGTGGAAAGAGGTGAAGAGTCAAACGACAGTGATGAGAGACCAACTTCACCCAATTTAGAATTAGATATGCAGGTTGAGATTGAAGGGGAGGTTGAGTCGGTTTATGGGTCAGAGAATATCCTAAATAATCCACATAATTCTGATGGGGAGGAAGTGGATGGAGCACCAGAGTTTAGGGTTGAGACTGATCTAGATCATATTCGATTTTGTGTTGGTATGAAATTTAGTAGTTCTAAAATCTTAAAAGATGCTATAAAGGACTATGCACTTAAGGAGTCTTACAATGTGAAGCTAAAAAAGAATGATGCTATAAAATCCTAA

Protein sequence

MVSLIPNEHNPNQVVCNIGQLNGEARMYLIDWYHTSSDDSEGVERGEESNDSDERPTSPNLELDMQVEIEGEVESVYGSENILNNPHNSDGEEVDGAPEFRVETDLDHIRFCVGMKFSSSKILKDAIKDYALKESYNVKLKKNDAIKS
Homology
[Close]
BLAST of Lag0011727 vs. NCBI nr
Match: KAE9463232.1 (hypothetical protein C3L33_04867, partial [Rhododendron williamsianum])

HSP 1 Score: 64.7 bits (156), Expect = 7.7e-07
Identity = 43/123 (34.96%), Postives = 71/123 (57.72%), Query Frame = 0 

Query: 33  YHTSSDD-------SEGVE-RGEESNDSDERPTSPNLELDMQVEIEGEVESVYGSENILN 92
           Y  S DD        +G+E  G   N   E+    N E++M+V+ +GE      SE++ +
Sbjct: 180 YAQSDDDELFEAFVDDGIEWEGLGKNKGKEKEV--NEEVNMEVD-DGEDYGDVSSEDLHS 239

Query: 93  NPHNSDGEEVDGAPEFRVETDLDHIRFCVGMKFSSSKILKDAIKDYALKESYNVKLKKND 148
              +SD E  D  PEFR ETD+  ++FC GMKFS++K  ++A+++YA+K+  ++K  KN+
Sbjct: 240 VYSDSDDEVKDKNPEFRAETDMGKVKFCPGMKFSNAKEFREAVREYAIKKGKDIKFVKNE 299

[Close]
BLAST of Lag0011727 vs. NCBI nr
Match: KAG5556147.1 (hypothetical protein RHGRI_006689 [Rhododendron griersonianum])

HSP 1 Score: 64.7 bits (156), Expect = 7.7e-07
Identity = 43/123 (34.96%), Postives = 71/123 (57.72%), Query Frame = 0 

Query: 33  YHTSSDD-------SEGVE-RGEESNDSDERPTSPNLELDMQVEIEGEVESVYGSENILN 92
           Y  S DD        +G+E  G   N   E+    N E++M+V+ +GE      SE++ +
Sbjct: 277 YARSDDDELFEAFVDDGIEWEGLGKNKGKEKEV--NEEVNMEVD-DGEDYGDVSSEDLHS 336

Query: 93  NPHNSDGEEVDGAPEFRVETDLDHIRFCVGMKFSSSKILKDAIKDYALKESYNVKLKKND 148
              +SD E  D  PEFR ETD+  ++FC GMKFS++K  ++A+++YA+K+  ++K  KN+
Sbjct: 337 VYSDSDDEVKDKNPEFRAETDMGKVKFCPGMKFSNAKEFREAVREYAIKKGKDIKFVKNE 396

[Close]
BLAST of Lag0011727 vs. NCBI nr
Match: KAG5521123.1 (hypothetical protein RHGRI_033621 [Rhododendron griersonianum])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 0 

Query: 33  YHTSSDD-------SEGVE-RGEESNDSDERPTSPNLELDMQVEIEGEVESVYGSENILN 92
           Y  S DD        +G+E  G   N   E+    N E++M+V+ +GE      SE++ +
Sbjct: 124 YAQSDDDELFEAFVDDGIEWEGLGKNKGKEKEV--NEEVNMEVD-DGEDYGDVSSEDLHS 183

Query: 93  NPHNSDGEEVDGAPEFRVETDLDHIRFCVGMKFSSSKILKDAIKDYALKESYNVKLKKND 148
              +SD E  D  PEFR ETD+  ++FC GMKFS++K  ++A+++YA+K+   +K  KN+
Sbjct: 184 VYSDSDDEVKDKNPEFRAETDMGKVKFCPGMKFSNAKEFREAVREYAIKKGKGIKFVKNE 243

[Close]
BLAST of Lag0011727 vs. NCBI nr
Match: KAG5521125.1 (hypothetical protein RHGRI_033621 [Rhododendron griersonianum])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 0 

Query: 33  YHTSSDD-------SEGVE-RGEESNDSDERPTSPNLELDMQVEIEGEVESVYGSENILN 92
           Y  S DD        +G+E  G   N   E+    N E++M+V+ +GE      SE++ +
Sbjct: 124 YAQSDDDELFEAFVDDGIEWEGLGKNKGKEKEV--NEEVNMEVD-DGEDYGDVSSEDLHS 183

Query: 93  NPHNSDGEEVDGAPEFRVETDLDHIRFCVGMKFSSSKILKDAIKDYALKESYNVKLKKND 148
              +SD E  D  PEFR ETD+  ++FC GMKFS++K  ++A+++YA+K+   +K  KN+
Sbjct: 184 VYSDSDDEVKDKNPEFRAETDMGKVKFCPGMKFSNAKEFREAVREYAIKKGKGIKFVKNE 243

[Close]
BLAST of Lag0011727 vs. NCBI nr
Match: KAG5521124.1 (hypothetical protein RHGRI_033621 [Rhododendron griersonianum])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 43/123 (34.96%), Postives = 70/123 (56.91%), Query Frame = 0 

Query: 33  YHTSSDD-------SEGVE-RGEESNDSDERPTSPNLELDMQVEIEGEVESVYGSENILN 92
           Y  S DD        +G+E  G   N   E+    N E++M+V+ +GE      SE++ +
Sbjct: 124 YAQSDDDELFEAFVDDGIEWEGLGKNKGKEKEV--NEEVNMEVD-DGEDYGDVSSEDLHS 183

Query: 93  NPHNSDGEEVDGAPEFRVETDLDHIRFCVGMKFSSSKILKDAIKDYALKESYNVKLKKND 148
              +SD E  D  PEFR ETD+  ++FC GMKFS++K  ++A+++YA+K+   +K  KN+
Sbjct: 184 VYSDSDDEVKDKNPEFRAETDMGKVKFCPGMKFSNAKEFREAVREYAIKKGKGIKFVKNE 243

The following BLAST results are available for this feature:
BLAST of Lag0011727 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE9463232.17.7e-0734.96hypothetical protein C3L33_04867, partial [Rhododendron williamsianum][more]
KAG5556147.17.7e-0734.96hypothetical protein RHGRI_006689 [Rhododendron griersonianum][more]
KAG5521123.11.0e-0634.96hypothetical protein RHGRI_033621 [Rhododendron griersonianum][more]
KAG5521125.11.0e-0634.96hypothetical protein RHGRI_033621 [Rhododendron griersonianum][more]
KAG5521124.11.0e-0634.96hypothetical protein RHGRI_033621 [Rhododendron griersonianum][more]
BLAST of Lag0011727 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..64
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 37..58

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011727.1Lag0011727.1mRNA