Lag0011633 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011633
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposon Ty3-G Gag-Pol polyprotein
Locationchr1: 29550695 .. 29552709 (+)
RNA-Seq ExpressionLag0011633
SyntenyLag0011633
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTCCGACGAACTGGATCAATACGACACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGTAGGGCCAAACACATGTGTCATTGGACACTTCACCATCTCCTCCCGTCAAAATCATTTTCCACATCCGGATGGCAAAGACTATCACTTGAACGGATAAGGATCTACCGAAGGCAGGAATGAACCATAACAAAGCCTTACACATTAAAGTGATCACTACAGGGAAAAGGGTGCCAATGGTTCTGGTTGACAATGGATCGGCCCTGAACGTGTGCCCATTCAGAACTGCTACTTGCTTAAGATATCAGCAAAAAGATTTCGCAGTCTTAGCGCAGGCCATTAGAGCATATGACAACACAGGGGGGTAATGGGCATCCTGGCCTTAGAATGAACTACAAGGCCGGTCCTGTTTAAGGAAAAACTCCAGGTACTAGACATCCCGACTTCCTTCAACCTGCTACTTGGAAGGTCGTGGATTCATGCCATAGAAGCGGTCCCCTCTACTTTGCATCATCAAGTCGACGTTCATACAAGGGAATCATTCAATTTCGATCTTTGGAGATCCAGAAGAGTCGGTGCTGGACCCTATCCCAGTGCGAGAAATTCAGCACGATGAGAACTTGGAATTGGCAGGATTCCAGTTCAAGCAAGTGCAGGTCATTGAGTTGGCAGAACCAGTCAAGGAATATTTAGCCTTGCCCGATTTTAGTGATAATGTCTTTGTCAGGGAAATATTCCGATCAATGTGCCACCTCCCCGGATCAGGACTCGGCCGGTGTCACCAAGGAATCGTGGAGCCAATTCATGTCCAGGCAATTGAGCCACCTTTTGGGTTGGGGTATATACCTACGAAAGAAGATCTCCAAAAATTGGAAGACAAGAAGAAGAAAAAGAAGAATAAGAGTCTCGTAAGAAAGCTTTTAAATATCTTCAGACTCTAAATGGGCGATTAGTCAAAGAAAGATATAACTTTCCCTTTTTCGGTTTTCTGGAGCCATGGATCGATGCTAGCGGGAACCACGTGCCGGGTTTCTAAATAAATATTCTTTACAGATAAAGTAACCTGGAAGCTTGATGAGGGGAAAGAAAAAATGATCGACCAGTGGGAAGAACCAAGGATCTTGACCTGGTATCCAGAGAAGAAAGGAGAAAAGGAAGGCTGTTGAATCAGAGATTGAGGAAGAATACCAGCTTCAACTTATGTTTACTCAGGACGGTGCAGCAGGGGAACAAGGGATGGTGTCCATGAAAATTGCGAACCCAGTGGCAAAAGACCCATCCACTCTCATCATCCCAACCGATGGAGCACCACCCAATTGGTCTTCTCTTCCTCAGCTTCAGTCTTTTAGTGTCCGAGATGAACCAGTCTTAGTCAAGTCTGTTGAGTCCCTGTTTAATGTAACATCTTTGGAGGATGGTCTTCAGTCTGTCCCGTCAGTGTCTGTTATCATTTCTGAAGTCGAGTTGGCCCTGGAGGCCAGAGAGTCTGTAATCAAGGAACTTATGGTTTGCAATGAAATGAAATCTAGGGTTGCTTATGTGTCGGAGTGATGATGAGAAAGAAAAAGGAATATCGAAAAAAAGGAAGAAAACAAATAGCAGACCTTAGCTCCCCTTCCAATGATCACTGCCTCATGCAGGCAGATGAGGAAGAAACCTATGTTTAAACTCCTCCTTCACTCTTAGAAATGGTGGAGAGATCAGAGGAAATGAAGGTTCAACCCTCATGGAAGAAACCCAACCCATTCATTTAGGGACTACAGACGAACCCCAAGAGGTTAGGATAGGAACCACTTTGACTCTCGAAGAATGGCTTGACCTTTTGAAAGAATACAAGGATGCCTTTGCATGGTTCTACGATGATATGCCTGGACTCAGCACAGAAAGAATTTCGAAAACATCCCTTTGTATCCTTGATGCCAAGCTAGTCAAGCAGAAACTTTGGAGAATGAGGCTCGAATAG

mRNA sequence

ATGGACTCCGACGAACTGGATCAATACGACACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCCATTAGAGCATATGACAACACAGGGGGGTAATGGGCATCCTGGCCTTAGAATGAACTACAAGGCCGGTCCTAAGCGGTCCCCTCTACTTTGCATCATCAAGTCGACGTTCATACAAGGGAATCATTCAATTTCGATCTTTGGAGATCCAGAAGAGTCGGTGCTGGACCCTATCCCAGTGCGAGAAATTCAGCACGATGAGAACTTGGAATTGGCAGGATTCCAGTTCAAGCAAGTGCAGGTCATTGAGTTGGCAGAACCAGTCAAGGAATATTTAGCCTTGCCCGATTTTAGTGATAATGTCTTTGTCAGGGAAATATTCCGATCAATGTGCCACCTCCCCGGATCAGGACTCGGCCGGTGTCACCAAGGAATCGTGGAGCCAATTCATGTCCAGGCAATTGAGCCACCTTTTGGGTTGGGGTATATACCTACGAAAGAAGATCTCCAAAAATTGGAAGACAAGAAGAAGAAAAAGAAGAATAAGAGTCTCAGAAGAAAGGAGAAAAGGAAGGCTGTTGAATCAGAGATTGAGGAAGAATACCAGCTTCAACTTATGTTTACTCAGGACGGTGCAGCAGGGGAACAAGGGATGGTGTCCATGAAAATTGCGAACCCAGTGGCAAAAGACCCATCCACTCTCATCATCCCAACCGATGGAGCACCACCCAATTGGTCTTCTCTTCCTCAGCTTCAGTCTTTTAGTGTCCGAGATGAACCAGTCTTAGTCAAGTCTGTTGAGTCCCTGTTTAATGTAACATCTTTGGAGGATGGTCTTCAGTCTGTCCCGTCAGTGTCTGTTATCATTTCTGAAGTCGAGTTGGCCCTGGAGGCCAGAGAGTCTGTAATCAAGGAACTTATGGTTTGCAATGAAATGAAATCTAGGGTTGCTTATGTGTCGGAAAATGGTGGAGAGATCAGAGGAAATGAAGGTTCAACCCTCATGGAAGAAACCCAACCCATTCATTTAGGGACTACAGACGAACCCCAAGAGGTTAGGATAGGAACCACTTTGACTCTCGAAGAATGGCTTGACCTTTTGAAAGAATACAAGGATGCCTTTGCATGGTTCTACGATGATATGCCTGGACTCAGCACAGAAAGAATTTCGAAAACATCCCTTTGTATCCTTGATGCCAAGCTAGTCAAGCAGAAACTTTGGAGAATGAGGCTCGAATAG

Coding sequence (CDS)

ATGGACTCCGACGAACTGGATCAATACGACACCAATGATGATATGGATTTTGTCAACAATGAGGAGGCCCAACACATGGCATCTAAGAGCCACCGTGATCCTGTCCTTAGAATGCCATTAGAGCATATGACAACACAGGGGGGTAATGGGCATCCTGGCCTTAGAATGAACTACAAGGCCGGTCCTAAGCGGTCCCCTCTACTTTGCATCATCAAGTCGACGTTCATACAAGGGAATCATTCAATTTCGATCTTTGGAGATCCAGAAGAGTCGGTGCTGGACCCTATCCCAGTGCGAGAAATTCAGCACGATGAGAACTTGGAATTGGCAGGATTCCAGTTCAAGCAAGTGCAGGTCATTGAGTTGGCAGAACCAGTCAAGGAATATTTAGCCTTGCCCGATTTTAGTGATAATGTCTTTGTCAGGGAAATATTCCGATCAATGTGCCACCTCCCCGGATCAGGACTCGGCCGGTGTCACCAAGGAATCGTGGAGCCAATTCATGTCCAGGCAATTGAGCCACCTTTTGGGTTGGGGTATATACCTACGAAAGAAGATCTCCAAAAATTGGAAGACAAGAAGAAGAAAAAGAAGAATAAGAGTCTCAGAAGAAAGGAGAAAAGGAAGGCTGTTGAATCAGAGATTGAGGAAGAATACCAGCTTCAACTTATGTTTACTCAGGACGGTGCAGCAGGGGAACAAGGGATGGTGTCCATGAAAATTGCGAACCCAGTGGCAAAAGACCCATCCACTCTCATCATCCCAACCGATGGAGCACCACCCAATTGGTCTTCTCTTCCTCAGCTTCAGTCTTTTAGTGTCCGAGATGAACCAGTCTTAGTCAAGTCTGTTGAGTCCCTGTTTAATGTAACATCTTTGGAGGATGGTCTTCAGTCTGTCCCGTCAGTGTCTGTTATCATTTCTGAAGTCGAGTTGGCCCTGGAGGCCAGAGAGTCTGTAATCAAGGAACTTATGGTTTGCAATGAAATGAAATCTAGGGTTGCTTATGTGTCGGAAAATGGTGGAGAGATCAGAGGAAATGAAGGTTCAACCCTCATGGAAGAAACCCAACCCATTCATTTAGGGACTACAGACGAACCCCAAGAGGTTAGGATAGGAACCACTTTGACTCTCGAAGAATGGCTTGACCTTTTGAAAGAATACAAGGATGCCTTTGCATGGTTCTACGATGATATGCCTGGACTCAGCACAGAAAGAATTTCGAAAACATCCCTTTGTATCCTTGATGCCAAGCTAGTCAAGCAGAAACTTTGGAGAATGAGGCTCGAATAG

Protein sequence

MDSDELDQYDTNDDMDFVNNEEAQHMASKSHRDPVLRMPLEHMTTQGGNGHPGLRMNYKAGPKRSPLLCIIKSTFIQGNHSISIFGDPEESVLDPIPVREIQHDENLELAGFQFKQVQVIELAEPVKEYLALPDFSDNVFVREIFRSMCHLPGSGLGRCHQGIVEPIHVQAIEPPFGLGYIPTKEDLQKLEDKKKKKKNKSLRRKEKRKAVESEIEEEYQLQLMFTQDGAAGEQGMVSMKIANPVAKDPSTLIIPTDGAPPNWSSLPQLQSFSVRDEPVLVKSVESLFNVTSLEDGLQSVPSVSVIISEVELALEARESVIKELMVCNEMKSRVAYVSENGGEIRGNEGSTLMEETQPIHLGTTDEPQEVRIGTTLTLEEWLDLLKEYKDAFAWFYDDMPGLSTERISKTSLCILDAKLVKQKLWRMRLE
Homology
BLAST of Lag0011633 vs. NCBI nr
Match: EEF27092.1 (conserved hypothetical protein [Ricinus communis])

HSP 1 Score: 201.1 bits (510), Expect = 2.0e-47
Identity = 125/188 (66.49%), Postives = 136/188 (72.34%), Query Frame = 0

Query: 144 IFRSMCHLPGSGLGRCHQGIVEPIHVQAIEPPFGLGYIPTKEDLQKLEDKKKKKKNKSLR 203
           +FRSM +LPGSGLGR HQGIVEPIHVQAIEPPFGLG          + D  KK       
Sbjct: 1   MFRSMRYLPGSGLGRHHQGIVEPIHVQAIEPPFGLGLC--------MGDFSKKDITFPFS 60

Query: 204 RKEKRKAVESEIEEEYQLQLMFTQDGAAGEQGMVSMKIANPVAKDPSTLIIPTDGAPPNW 263
                 ++         L     QDGAAGEQGMVSM IA+PVAKDPSTLIIP DGAP NW
Sbjct: 61  VFRSHGSM---------LAGTACQDGAAGEQGMVSMIIADPVAKDPSTLIIPADGAPRNW 120

Query: 264 SSLPQLQSFSVRDEPVLVKSVESLFNVTSLEDGLQSVPSVSVIISEVE-LALEARESVIK 323
           +SLPQL+S SV  EPVLVKSVESLFNVTS EDGL+SVPSVSVIISEVE  AL ARESVIK
Sbjct: 121 ASLPQLKSVSVLSEPVLVKSVESLFNVTSSEDGLKSVPSVSVIISEVERSALGARESVIK 171

Query: 324 ELMVCNEM 331
           EL+VCNE+
Sbjct: 181 ELVVCNEI 171

BLAST of Lag0011633 vs. NCBI nr
Match: EEF25156.1 (conserved hypothetical protein, partial [Ricinus communis])

HSP 1 Score: 154.8 bits (390), Expect = 1.6e-33
Identity = 80/108 (74.07%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 72  KSTFIQGNHSISIFGDPEESVLDPIPVREIQHDENLELAGFQFKQVQVIELAEPVKEYLA 131
           K  FIQGN  ISIFGDPEE VLDPI V EIQHDENL             ELAE VKEYL 
Sbjct: 30  KVKFIQGNRVISIFGDPEEPVLDPIQVLEIQHDENL-------------ELAETVKEYLP 89

Query: 132 LPDFSDNVFVREIFRSMCHLPGSGLGRCHQGIVEPIHVQAIEPPFGLG 180
           LP+FSDNVFV E+FRSM +LPGSGLGR HQGIVEPIHVQAIEPPFGLG
Sbjct: 90  LPNFSDNVFVGEMFRSMRYLPGSGLGRHHQGIVEPIHVQAIEPPFGLG 124

BLAST of Lag0011633 vs. NCBI nr
Match: RVW53436.1 (Retrovirus-related Pol polyprotein from transposon 17.6 [Vitis vinifera])

HSP 1 Score: 105.1 bits (261), Expect = 1.5e-18
Identity = 114/406 (28.08%), Postives = 181/406 (44.58%), Query Frame = 0

Query: 97   PVREIQH-DENLELAGFQFKQVQVIELAEPVKEYLALP-DFSDNVFVREIFRSMCHLPGS 156
            PV EI H D++L L GF F +VQ +E+ +  ++++AL  D  ++  V +I RSM +LPG 
Sbjct: 957  PVLEISHADDDLFLTGFTFDEVQTLEMEDFCRDFVALSFDQHNSTVVLDIMRSMAYLPGM 1016

Query: 157  GLGRCHQGIVEPIHVQAIEPPFGLGYIPTKEDLQKLEDKKKKKKNKSL------------ 216
            GLGR   G  E +     + PFGLG+IPT+ D + +   ++++    L            
Sbjct: 1017 GLGRRQHGPREFVTFPDRDVPFGLGFIPTEADYRYMARLRRERVRARLTHTPFYYPVRPY 1076

Query: 217  ---------RRKEKRKAVESEI-----EEEYQLQLMFTQ----DGAAGEQGMVSMKIANP 276
                     R  E     +  I      +E +LQ +  Q    DGA G    V +   +P
Sbjct: 1077 TMSLADYFVRASEPHAPSDGIIGGLSTTQEAELQRLVQQLQLSDGAPGPSASVLIAPPSP 1136

Query: 277  VAKDPSTLIIP---------------TDGAPPNWSSLPQLQSFSVRD----EPVLVKSVE 336
                  TL  P                DGA P    + ++ + S+       P  + S  
Sbjct: 1137 DRTSLMTLCFPDEIDDHGTFAEIGDVEDGAVPRDEYIDEMLAMSLSQTEEIAPPELASPF 1196

Query: 337  SLFNVTSLE--DGLQSVPSVSVIISEVELALEARESVI------KELM-------VCNEM 396
             LF V+  E    +Q  P++ V + +V +A++  +  +       +L+       V +  
Sbjct: 1197 DLFGVSVFEIAGEIQVAPTLEV-VEDVVVAVDLFDGPVGLVEGASDLVDPPLPFDVLSGF 1256

Query: 397  KSRVAYVSENGG------EIRGNEGSTLMEETQPIHLGTTDEPQEVRIGTTLTLEE---W 428
             SR  YVS+         E      S  + +T+ +  GT D+P+E+RIG+ L+ +E    
Sbjct: 1257 VSRHDYVSDFSSMDLSTFEPVDQRVSPAVGDTEIVDFGTADQPRELRIGSDLSTDERDSL 1316

BLAST of Lag0011633 vs. NCBI nr
Match: XP_019078464.1 (PREDICTED: uncharacterized protein LOC109123373 [Vitis vinifera])

HSP 1 Score: 102.8 bits (255), Expect = 7.4e-18
Identity = 102/387 (26.36%), Postives = 174/387 (44.96%), Query Frame = 0

Query: 97  PVREIQH-DENLELAGFQFKQVQVIELAEPVKEYLALP-DFSDNVFVREIFRSMCHLPGS 156
           PV EI H D++L L GF F +VQ +E+ +  ++++AL  D   +  V +I RSM +LPG 
Sbjct: 350 PVLEISHADDDLFLTGFTFDEVQTLEMEDLCRDFVALSFDQHSSTVVLDIMRSMSYLPGM 409

Query: 157 GLGRCHQGIVEPIHVQAIEPPFGLGYIPTKEDLQKLEDKKKKKKNKSL------------ 216
           GLGR   G  E +     + PFGLG+ PT+ D + +   ++++    L            
Sbjct: 410 GLGRRQHGPSEFMTFPDRDVPFGLGFSPTEADYRHMARLRRERVRARLTHTPFYYPVRPY 469

Query: 217 ---------RRKEKRKAVESEI-----EEEYQLQLMFTQ----DGAAGEQGMVSMKIANP 276
                    R  E     +  I      +E +LQ +  Q    DGA G    V +   +P
Sbjct: 470 TMSLADYFVRASEPHAPSDGIIGGLSTTQEAELQRLVQQLQLSDGAPGPSASVLIAPPSP 529

Query: 277 VAKDPSTLIIP---------------TDGAPPNWSSLPQLQSFSV-RDEPVLVKSVESLF 336
                 TL  P                DGA P+   + ++ + S+ + E +    + S F
Sbjct: 530 DRTSLMTLCFPDEIDDHGTFAEIGDVVDGAVPHDEYVDEMLAMSLGQTEEIAPPELASPF 589

Query: 337 NVTSLEDGLQSVPSVSVIISEVELALEARESVIKELMVCNEMKSRVAYVSENGGEIRGNE 396
           ++            VSV+    E+ +     V+++++V  ++        ++      ++
Sbjct: 590 DLF----------GVSVLEIAEEIQVAPTPEVVEDVIVAVDLFDGPHDSDDDSSPASDSD 649

Query: 397 G-----STLMEETQPIHLGTTDEPQEVRIGTTLTLEE---WLDLLKEYKDAFAWFYDDMP 428
                 S ++ +T+ +  GT D+P+E+RIG+ L+ +E    + LL+ Y D FAW Y+DMP
Sbjct: 650 PVDQRVSPIVGDTEIVDFGTADQPRELRIGSDLSTDERDSLIQLLRSYLDVFAWSYEDMP 709

BLAST of Lag0011633 vs. NCBI nr
Match: RVW73736.1 (Transposon Ty3-G Gag-Pol polyprotein [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-17
Identity = 94/340 (27.65%), Postives = 162/340 (47.65%), Query Frame = 0

Query: 97  PVREIQH-DENLELAGFQFKQVQVIELAEPVKEYLALP-DFSDNVFVREIFRSMCHLPGS 156
           PV EI H D++L L GF F +VQ +E+ +  ++++A+  D   +  V +I RSM +LPG 
Sbjct: 19  PVLEISHTDDDLFLTGFTFDEVQTVEIEDFCRDFVAMSFDRHGSTVVLDIMRSMSYLPGM 78

Query: 157 GLGRCHQGIVEPIHVQAIEPPFGLGYIPTKEDLQKLEDKKKKKKNKSLRRKEKRKAVESE 216
           GLGR   G  E I +   + PFGLG+IPT+ D   +   +K++    L        +   
Sbjct: 79  GLGRRQHGPSEFIAIPDHDVPFGLGFIPTEADYLYMARLRKERVRARLTHTPFYYPLRPY 138

Query: 217 IEEEYQLQLMFTQDGAAGEQGMVSMKIANPVAKDPSTLIIPTDGAPPNWSSLPQLQSFSV 276
                   +  ++   A + G +S     P     S+     DGA P+   + ++ + S+
Sbjct: 139 TRSLADYFVRASEPDPARDIGGLS-TTRRPSFSALSSSRDVVDGAAPHDEYIDEMLALSL 198

Query: 277 ----RDEPVLVKSVESLFNVTSLEDGLQSVPSVSVIISEVELALEARESVIKELMVCNEM 336
               R  P L    +     +   D   S   +S  +S  ++  +  +  I + +  ++ 
Sbjct: 199 SRSRRVHPGLTSPFDLFGGASDFVDPPLSFDVLSGFVSRSDIVSDIFD--IDDEIAQHDS 258

Query: 337 KSRVAYVSENGGEIRGNEGSTLMEETQPIHLGTTDEPQEVRIGTTLTLEE---WLDLLKE 396
               + VS++  +      S  + +T+ +  GT D+P+E+RIG+ L+ +E    + LL+ 
Sbjct: 259 DDDSSSVSDS--DPVDQRVSPAVGDTEIVDFGTADQPRELRIGSDLSTDERDSLIQLLRA 318

Query: 397 YKDAFAWFYDDMPGLSTERISKTSLCILDAKLVKQKLWRM 428
           Y D FAW Y+DMPGL    +      +  A+ VKQKL R+
Sbjct: 319 YLDVFAWSYEDMPGLDPSIVQHRLPLLPHARPVKQKLRRL 353

BLAST of Lag0011633 vs. ExPASy TrEMBL
Match: B9TAM0 (G-patch domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_2021640 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.7e-48
Identity = 125/188 (66.49%), Postives = 136/188 (72.34%), Query Frame = 0

Query: 144 IFRSMCHLPGSGLGRCHQGIVEPIHVQAIEPPFGLGYIPTKEDLQKLEDKKKKKKNKSLR 203
           +FRSM +LPGSGLGR HQGIVEPIHVQAIEPPFGLG          + D  KK       
Sbjct: 1   MFRSMRYLPGSGLGRHHQGIVEPIHVQAIEPPFGLGLC--------MGDFSKKDITFPFS 60

Query: 204 RKEKRKAVESEIEEEYQLQLMFTQDGAAGEQGMVSMKIANPVAKDPSTLIIPTDGAPPNW 263
                 ++         L     QDGAAGEQGMVSM IA+PVAKDPSTLIIP DGAP NW
Sbjct: 61  VFRSHGSM---------LAGTACQDGAAGEQGMVSMIIADPVAKDPSTLIIPADGAPRNW 120

Query: 264 SSLPQLQSFSVRDEPVLVKSVESLFNVTSLEDGLQSVPSVSVIISEVE-LALEARESVIK 323
           +SLPQL+S SV  EPVLVKSVESLFNVTS EDGL+SVPSVSVIISEVE  AL ARESVIK
Sbjct: 121 ASLPQLKSVSVLSEPVLVKSVESLFNVTSSEDGLKSVPSVSVIISEVERSALGARESVIK 171

Query: 324 ELMVCNEM 331
           EL+VCNE+
Sbjct: 181 ELVVCNEI 171

BLAST of Lag0011633 vs. ExPASy TrEMBL
Match: B9TG58 (G-patch domain-containing protein (Fragment) OS=Ricinus communis OX=3988 GN=RCOM_2070490 PE=4 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.9e-34
Identity = 80/108 (74.07%), Postives = 83/108 (76.85%), Query Frame = 0

Query: 72  KSTFIQGNHSISIFGDPEESVLDPIPVREIQHDENLELAGFQFKQVQVIELAEPVKEYLA 131
           K  FIQGN  ISIFGDPEE VLDPI V EIQHDENL             ELAE VKEYL 
Sbjct: 30  KVKFIQGNRVISIFGDPEEPVLDPIQVLEIQHDENL-------------ELAETVKEYLP 89

Query: 132 LPDFSDNVFVREIFRSMCHLPGSGLGRCHQGIVEPIHVQAIEPPFGLG 180
           LP+FSDNVFV E+FRSM +LPGSGLGR HQGIVEPIHVQAIEPPFGLG
Sbjct: 90  LPNFSDNVFVGEMFRSMRYLPGSGLGRHHQGIVEPIHVQAIEPPFGLG 124

BLAST of Lag0011633 vs. ExPASy TrEMBL
Match: A0A438F0H3 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Vitis vinifera OX=29760 GN=pol_635 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 7.2e-19
Identity = 114/406 (28.08%), Postives = 181/406 (44.58%), Query Frame = 0

Query: 97   PVREIQH-DENLELAGFQFKQVQVIELAEPVKEYLALP-DFSDNVFVREIFRSMCHLPGS 156
            PV EI H D++L L GF F +VQ +E+ +  ++++AL  D  ++  V +I RSM +LPG 
Sbjct: 957  PVLEISHADDDLFLTGFTFDEVQTLEMEDFCRDFVALSFDQHNSTVVLDIMRSMAYLPGM 1016

Query: 157  GLGRCHQGIVEPIHVQAIEPPFGLGYIPTKEDLQKLEDKKKKKKNKSL------------ 216
            GLGR   G  E +     + PFGLG+IPT+ D + +   ++++    L            
Sbjct: 1017 GLGRRQHGPREFVTFPDRDVPFGLGFIPTEADYRYMARLRRERVRARLTHTPFYYPVRPY 1076

Query: 217  ---------RRKEKRKAVESEI-----EEEYQLQLMFTQ----DGAAGEQGMVSMKIANP 276
                     R  E     +  I      +E +LQ +  Q    DGA G    V +   +P
Sbjct: 1077 TMSLADYFVRASEPHAPSDGIIGGLSTTQEAELQRLVQQLQLSDGAPGPSASVLIAPPSP 1136

Query: 277  VAKDPSTLIIP---------------TDGAPPNWSSLPQLQSFSVRD----EPVLVKSVE 336
                  TL  P                DGA P    + ++ + S+       P  + S  
Sbjct: 1137 DRTSLMTLCFPDEIDDHGTFAEIGDVEDGAVPRDEYIDEMLAMSLSQTEEIAPPELASPF 1196

Query: 337  SLFNVTSLE--DGLQSVPSVSVIISEVELALEARESVI------KELM-------VCNEM 396
             LF V+  E    +Q  P++ V + +V +A++  +  +       +L+       V +  
Sbjct: 1197 DLFGVSVFEIAGEIQVAPTLEV-VEDVVVAVDLFDGPVGLVEGASDLVDPPLPFDVLSGF 1256

Query: 397  KSRVAYVSENGG------EIRGNEGSTLMEETQPIHLGTTDEPQEVRIGTTLTLEE---W 428
             SR  YVS+         E      S  + +T+ +  GT D+P+E+RIG+ L+ +E    
Sbjct: 1257 VSRHDYVSDFSSMDLSTFEPVDQRVSPAVGDTEIVDFGTADQPRELRIGSDLSTDERDSL 1316

BLAST of Lag0011633 vs. ExPASy TrEMBL
Match: A0A438GNF1 (Transposon Ty3-G Gag-Pol polyprotein OS=Vitis vinifera OX=29760 GN=TY3B-G_163 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 8.0e-18
Identity = 94/340 (27.65%), Postives = 162/340 (47.65%), Query Frame = 0

Query: 97  PVREIQH-DENLELAGFQFKQVQVIELAEPVKEYLALP-DFSDNVFVREIFRSMCHLPGS 156
           PV EI H D++L L GF F +VQ +E+ +  ++++A+  D   +  V +I RSM +LPG 
Sbjct: 19  PVLEISHTDDDLFLTGFTFDEVQTVEIEDFCRDFVAMSFDRHGSTVVLDIMRSMSYLPGM 78

Query: 157 GLGRCHQGIVEPIHVQAIEPPFGLGYIPTKEDLQKLEDKKKKKKNKSLRRKEKRKAVESE 216
           GLGR   G  E I +   + PFGLG+IPT+ D   +   +K++    L        +   
Sbjct: 79  GLGRRQHGPSEFIAIPDHDVPFGLGFIPTEADYLYMARLRKERVRARLTHTPFYYPLRPY 138

Query: 217 IEEEYQLQLMFTQDGAAGEQGMVSMKIANPVAKDPSTLIIPTDGAPPNWSSLPQLQSFSV 276
                   +  ++   A + G +S     P     S+     DGA P+   + ++ + S+
Sbjct: 139 TRSLADYFVRASEPDPARDIGGLS-TTRRPSFSALSSSRDVVDGAAPHDEYIDEMLALSL 198

Query: 277 ----RDEPVLVKSVESLFNVTSLEDGLQSVPSVSVIISEVELALEARESVIKELMVCNEM 336
               R  P L    +     +   D   S   +S  +S  ++  +  +  I + +  ++ 
Sbjct: 199 SRSRRVHPGLTSPFDLFGGASDFVDPPLSFDVLSGFVSRSDIVSDIFD--IDDEIAQHDS 258

Query: 337 KSRVAYVSENGGEIRGNEGSTLMEETQPIHLGTTDEPQEVRIGTTLTLEE---WLDLLKE 396
               + VS++  +      S  + +T+ +  GT D+P+E+RIG+ L+ +E    + LL+ 
Sbjct: 259 DDDSSSVSDS--DPVDQRVSPAVGDTEIVDFGTADQPRELRIGSDLSTDERDSLIQLLRA 318

Query: 397 YKDAFAWFYDDMPGLSTERISKTSLCILDAKLVKQKLWRM 428
           Y D FAW Y+DMPGL    +      +  A+ VKQKL R+
Sbjct: 319 YLDVFAWSYEDMPGLDPSIVQHRLPLLPHARPVKQKLRRL 353

BLAST of Lag0011633 vs. ExPASy TrEMBL
Match: A0A438CNR0 (Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=29760 GN=pol_2509 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 5.2e-17
Identity = 105/398 (26.38%), Postives = 172/398 (43.22%), Query Frame = 0

Query: 97  PVREIQH-DENLELAGFQFKQVQVIELAEPVKEYLALP-DFSDNVFVREIFRSMCHLPGS 156
           PV EI H D++L L GF F +VQ +E+ +  ++++A+P D   N  V +I RSM +LPG 
Sbjct: 582 PVLEISHTDDDLFLTGFTFDEVQTVEIEDFCRDFVAMPFDQHGNTVVLDIMRSMSYLPGM 641

Query: 157 GLGRCHQGIVEPIHVQAIEPPFGLGYIPTKEDLQKLEDKKKKKKNKSL------------ 216
           GLGR   G  E I +   + PFGLG++PT+ D   +   +K++    L            
Sbjct: 642 GLGRRQHGPSEFITIPDHDVPFGLGFVPTEADYLYMARLRKERVRARLTHTPFYYPLRPY 701

Query: 217 ---------RRKEKRK---------AVESEIEEEYQLQLMFTQDGAAGEQGMVSMKIANP 276
                    R  E            +   E E +  +Q +  +DGA G    V +  ++P
Sbjct: 702 TRSLADYFVRASEPHAPSDGIVGGLSTTQEAELQRLVQQLRLRDGAPGPSTSVLIAPSSP 761

Query: 277 VAKDPSTLIIPTD--------------GAPPNWSSLPQLQSFS--VRDEPVLVKSVESLF 336
                 TL  P +                 P   S+  L  F   +     +V+      
Sbjct: 762 DRTSLMTLCFPDEINEHGTLAELAEESLTAPALESVKDLIPFDDLIDSHVGIVEGASDFV 821

Query: 337 NVTSLEDGLQSVPSVSVIISEV---ELALEARESVI--KELMVCNEMKSRVAYVSENGGE 396
           +     D L    S S I+S+V   +L++    SV    +L   +   S++ Y+ +   +
Sbjct: 822 DPPLSFDVLSGFVSRSDIVSDVSSMDLSIFEYFSVSCDIDLSAPSSPTSQIFYIDDEIAQ 881

Query: 397 IRGNEGSTLMEETQP--------------IHLGTTDEPQEVRIGTTLTLEE---WLDLLK 425
              ++ S+ + ++ P              +  GT D+P+E+RIG+ L+ +E    + LL+
Sbjct: 882 HDSDDDSSSVSDSDPVDQRVSPAVGDTEIVDFGTADQPRELRIGSDLSTDERDSLIQLLR 941

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
EEF27092.12.0e-4766.49conserved hypothetical protein [Ricinus communis][more]
EEF25156.11.6e-3374.07conserved hypothetical protein, partial [Ricinus communis][more]
RVW53436.11.5e-1828.08Retrovirus-related Pol polyprotein from transposon 17.6 [Vitis vinifera][more]
XP_019078464.17.4e-1826.36PREDICTED: uncharacterized protein LOC109123373 [Vitis vinifera][more]
RVW73736.11.6e-1727.65Transposon Ty3-G Gag-Pol polyprotein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
B9TAM09.7e-4866.49G-patch domain-containing protein OS=Ricinus communis OX=3988 GN=RCOM_2021640 PE... [more]
B9TG587.9e-3474.07G-patch domain-containing protein (Fragment) OS=Ricinus communis OX=3988 GN=RCOM... [more]
A0A438F0H37.2e-1928.08Retrovirus-related Pol polyprotein from transposon 17.6 OS=Vitis vinifera OX=297... [more]
A0A438GNF18.0e-1827.65Transposon Ty3-G Gag-Pol polyprotein OS=Vitis vinifera OX=29760 GN=TY3B-G_163 PE... [more]
A0A438CNR05.2e-1726.38Retrovirus-related Pol polyprotein from transposon 297 OS=Vitis vinifera OX=2976... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 187..207
NoneNo IPR availablePANTHERPTHR24559:SF322RNA-DIRECTED DNA POLYMERASE (REVERSE TRANSCRIPTASE), RIBONUCLEASE H-LIKE PROTEINcoord: 354..430
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 354..430
IPR000467G-patch domainPFAMPF01585G-patchcoord: 152..170
e-value: 4.4E-5
score: 23.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011633.1Lag0011633.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding