Lag0011630 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011630
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	cyclin-T1-3-like
Location	chr1: 29435274 .. 29437094 (+)
RNA-Seq Expression	Lag0011630
Synteny	Lag0011630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAACAGAACGAGAAACAGAGCATTGAGGAAATTACCAGAGCATGAGGCCTTAAATAATGCTCTTTCCCAAGTTCATCTTCGAACTTCTTTTCAAGAATATTCATTTCATCATCTGCAACAATTCTCGCTTAACAAGATGAATTCCAAACCTTATACAAAGCAAAAACGTAAGTAAAATACAATCGACACATATCTCCAATCAAAACCTTAAACTAAAACTAAAGCTCCAAAACATATGAGTAAATTAGAGCTAATAACCAACAACATCTAGAGGATTATAGAACACTTGGTGTGCAGTAATTTGCATTGACAATGGAGAAGTTAATGTTGTAAGTTTGTGAGTAAATGAAGAACAGAACGAGAAACAGAGCATTGAGGAAATTACCAGAGCATGAGGCCTTAAATAATGCTCTTTCCCAAGTTCATCTTCGAACTTCTTTTCAAGAATATTCATTTCATCATCTGCAACAATTCTCGCTTAACAAGATGAATTCCAAACCTTATACAAATAAAAAACGTATAAGTGAAATACAACCAGCACACATCTCCAATCAAAACCTTAAACTATGTCACTTCTCTTAGAGAGAATATAAAAACTATACTGTTACTATACATAATTGCAACTTAATAAGAAAGAAAAGGAAATATATAAAAGAAACTAGGAAAACAAATCGTAAGCATAACCATCTCACTTCTCTTCCAAAGAACAGTACCAGGTAGAAATTGTTAACAAGGAAATATACACAAACAACACCTCACCTTTTCTATACCCATAACTAGAGGAAACATTGCTAAAATAATGTAAGTGACAAATAATGTATTTGGGTCACAACAGTTGGTCAACGTTGGAAGGCATTGACATCTAAATCATGTCATTACTAGAAAACGTCATTGCAACTATTCCATAATTCATTCAAGTCAAAGGAATCCAAAAAAATTGAAGCTTACTTATTGCTTACGTCCTAAACAGAAGGTGCAGATAACACGGTCAAGCACTTGAACGCACAAGAGAACCTGTTATGGTAAATCCCAAACCTAATGGCTTCCCCCCTTGGGTAGAACAGAAACTTCATATGGACAATATCATAACAAAGCATTCTGAAATATCATAACAAAGCACAAAATCATGATAAGCTCATTCCTTACCTTCCTCATTTAATCTCTCCATCTTATCACCCCCCCCCCCCCAAGTTGATCTGATAAGAAAAGGTGCAGCTATTCGTTATCATTTTCAAACAAGTCTGCCATGACCTTTATGTATCCTTCACGCTGATACCAGTAAGGTAGAACCACAAGCTTTGTTATCCTGTCTCTTTTTTTCTACCATAAAATGGGAAGAAGCATCAATAAATAAATACAATAATTTTGTTCATGTACCAAATTTTGGAGTTTGTAAGTTTCATAAGATGTTGTTGTTCCACTTATAACTGAATAGGACCTTACAAGGCTAAGAAAGAACTAAATATTGAAAAAATAAAAATTTTTGATCAGCCTACAAAAGAGTACAATGAGTGTAAGAAAGTTAAAGCTAAAGAGATTCAAAGCAATCGCTGAAACTTTCGTATGTTGGGTAACAGATATGCATATGGAGAATTTATCATCTAGTGATCCATCACATCAGACAATGTACGAAAATAGTGATTCAAAGCAATCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAAGAATATTCACCTTCTAAACAAGATGGGATTGACTTGAAAAAGGAGACATATTTACGCAAGTCATACTGTACATTTCTCCGAGATTTGGGAATGAGACTTAAAGTGTGA

mRNA sequence

ATGAAGAACAGAACGAGAAACAGAGCATTGAGGAAATTACCAGAGCATGAGGCCTTAAATAATGCTCTTTCCCAAGTTCATCTTCGAACTTCTTTTCAAGAATATTCATTTCATCATCTGCAACAATTCTCGCTTAACAAGATGAATTCCAAACCTTATACAAAGCAAAAACATATGCATATGGAGAATTTATCATCTAGTGATCCATCACATCAGACAATGTACGAAAATAGTGATTCAAAGCAATCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAAGAATATTCACCTTCTAAACAAGATGGGATTGACTTGAAAAAGGAGACATATTTACGCAAGTCATACTGTACATTTCTCCGAGATTTGGGAATGAGACTTAAAGTGTGA

Coding sequence (CDS)

ATGAAGAACAGAACGAGAAACAGAGCATTGAGGAAATTACCAGAGCATGAGGCCTTAAATAATGCTCTTTCCCAAGTTCATCTTCGAACTTCTTTTCAAGAATATTCATTTCATCATCTGCAACAATTCTCGCTTAACAAGATGAATTCCAAACCTTATACAAAGCAAAAACATATGCATATGGAGAATTTATCATCTAGTGATCCATCACATCAGACAATGTACGAAAATAGTGATTCAAAGCAATCACAGGATGGGTTGGAGGATGGCTCTCGATGGTATTTTTCTAGGAAGGAATTAGAAGAATATTCACCTTCTAAACAAGATGGGATTGACTTGAAAAAGGAGACATATTTACGCAAGTCATACTGTACATTTCTCCGAGATTTGGGAATGAGACTTAAAGTGTGA

Protein sequence

MKNRTRNRALRKLPEHEALNNALSQVHLRTSFQEYSFHHLQQFSLNKMNSKPYTKQKHMHMENLSSSDPSHQTMYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSKQDGIDLKKETYLRKSYCTFLRDLGMRLKV

Homology

[Close]

BLAST of Lag0011630 vs. NCBI nr
Match: XP_038901562.1 (cyclin-T1-3-like isoform X3 [Benincasa hispida])

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-32
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 59  MHMENLSSSDPSHQTMYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSKQDGIDLKKETY 118
           MHMENLSSSDPSHQ MYENSDSK SQDGLEDGSRWYFSRKELEE+SPSKQDGIDLKKETY
Sbjct: 1   MHMENLSSSDPSHQVMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60

Query: 119 LRKSYCTFLRDLGMRLKV 137
           LRKSYCTFL+DLGMRLKV
Sbjct: 61  LRKSYCTFLQDLGMRLKV 78

[Close]

BLAST of Lag0011630 vs. NCBI nr
Match: XP_038901559.1 (cyclin-T1-3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 150.2 bits (378), Expect = 1.3e-32
Identity = 74/78 (94.87%), Postives = 76/78 (97.44%), Query Frame = 0


Query: 59  MHMENLSSSDPSHQTMYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSKQDGIDLKKETY 118
           MHMENLSSSDPSHQ MYENSDSK SQDGLEDGSRWYFSRKELEE+SPSKQDGIDLKKETY
Sbjct: 1   MHMENLSSSDPSHQVMYENSDSKHSQDGLEDGSRWYFSRKELEEFSPSKQDGIDLKKETY 60

Query: 119 LRKSYCTFLRDLGMRLKV 137
           LRKSYCTFL+DLGMRLKV
Sbjct: 61  LRKSYCTFLQDLGMRLKV 78

[Close]

BLAST of Lag0011630 vs. NCBI nr
Match: KAG6604719.1 (Cyclin-T1-3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 2.8e-32
Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 57  KHMHMENLSSSDPSHQTMYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSKQDGIDLKKE 116
           K MHMENLSS++PSHQ +YENSDSKQSQDGLEDGSRWYFSRKELEEYSPS+QDGIDLKKE
Sbjct: 106 KDMHMENLSSTEPSHQAIYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSRQDGIDLKKE 165

Query: 117 TYLRKSYCTFLRDLGMRLKV 137
           TYLRKSYCTFL+DLGMRLKV
Sbjct: 166 TYLRKSYCTFLQDLGMRLKV 185

[Close]

BLAST of Lag0011630 vs. NCBI nr
Match: XP_022947953.1 (cyclin-T1-3-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-32
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 59  MHMENLSSSDPSHQTMYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSKQDGIDLKKETY 118
           MHMENLSS++PSHQ +YENSDSKQSQDGLEDGSRWYFSRKELEEYSPS+QDGIDLKKETY
Sbjct: 1   MHMENLSSTEPSHQAIYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSRQDGIDLKKETY 60

Query: 119 LRKSYCTFLRDLGMRLKV 137
           LRKSYCTFL+DLGMRLKV
Sbjct: 61  LRKSYCTFLQDLGMRLKV 78

[Close]

BLAST of Lag0011630 vs. NCBI nr
Match: XP_022947951.1 (cyclin-T1-3-like isoform X1 [Cucurbita moschata] >XP_022947952.1 cyclin-T1-3-like isoform X1 [Cucurbita moschata])

HSP 1 Score: 148.3 bits (373), Expect = 4.9e-32
Identity = 72/78 (92.31%), Postives = 77/78 (98.72%), Query Frame = 0


Query: 59  MHMENLSSSDPSHQTMYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSKQDGIDLKKETY 118
           MHMENLSS++PSHQ +YENSDSKQSQDGLEDGSRWYFSRKELEEYSPS+QDGIDLKKETY
Sbjct: 1   MHMENLSSTEPSHQAIYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSRQDGIDLKKETY 60

Query: 119 LRKSYCTFLRDLGMRLKV 137
           LRKSYCTFL+DLGMRLKV
Sbjct: 61  LRKSYCTFLQDLGMRLKV 78

[Close]

BLAST of Lag0011630 vs. ExPASy Swiss-Prot
Match: Q2QQS5 (Cyclin-T1-4 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-1 PE=2 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-18
Identity = 48/74 (64.86%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 67  SDPSHQTMYENSDSKQSQDGLED----GSRWYFSRKELEEYSPSKQDGIDLKKETYLRKS 126
           SD SH  + ENS  + +Q   E+    G+ WYFSRKE+EE SPS++DGIDLKKE+YLRKS
Sbjct: 6   SDSSHHGIVENSPYRTTQGRNEETGELGASWYFSRKEIEENSPSRRDGIDLKKESYLRKS 65

Query: 127 YCTFLRDLGMRLKV 137
           YCTFL+DLGMRLKV
Sbjct: 66  YCTFLQDLGMRLKV 79

[Close]

BLAST of Lag0011630 vs. ExPASy Swiss-Prot
Match: Q2RAC5 (Cyclin-T1-3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-3 PE=3 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 4.6e-17
Identity = 48/80 (60.00%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 61  MENLSSSDPSHQTMYENSDSKQSQD----GLEDGSRWYFSRKELEEYSPSKQDGIDLKKE 120
           M+ + +SD SH  + ENS  +   D    G + G+ WYFSRKE+EE S S++DGIDLKKE
Sbjct: 1   MDGIQTSDSSHHGIVENSPYRTPYDRYAEGGQLGASWYFSRKEIEENSLSRRDGIDLKKE 60

Query: 121 TYLRKSYCTFLRDLGMRLKV 137
           +YLRKSYCTFL+DLGMRLKV
Sbjct: 61  SYLRKSYCTFLQDLGMRLKV 80

[Close]

BLAST of Lag0011630 vs. ExPASy Swiss-Prot
Match: Q9FKE6 (Cyclin-T1-5 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-5 PE=1 SV=2)

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-16
Identity = 46/76 (60.53%), Postives = 57/76 (75.00%), Query Frame = 0


Query: 61  MENLSSSDPSHQTMYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSKQDGIDLKKETYLR 120
           M  + + + S+     +S S+ S +  E+ SRWYF RKE+EE SPS+ DGIDLKKETYLR
Sbjct: 1   MAGVLAGECSYSESGVSSHSRNSHEKQEEVSRWYFGRKEIEENSPSRLDGIDLKKETYLR 60

Query: 121 KSYCTFLRDLGMRLKV 137
           KSYCTFL+DLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Lag0011630 vs. ExPASy Swiss-Prot
Match: Q8GYM6 (Cyclin-T1-4 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-4 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.6e-15
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 61  MENLSSSDPSHQTMYENSDSKQSQDGLEDGSRWYFSRKELEEYSPSKQDGIDLKKETYLR 120
           M  + + D S      +S S+ S +  ++ +RWYF RKE+EE SPS+ D IDLKKETYLR
Sbjct: 1   MAGVLAGDCSFGESGVSSYSRNSNEKQDEVARWYFGRKEIEENSPSRLDSIDLKKETYLR 60

Query: 121 KSYCTFLRDLGMRLKV 137
           KSYCTFL+DLGMRLKV
Sbjct: 61  KSYCTFLQDLGMRLKV 76

[Close]

BLAST of Lag0011630 vs. ExPASy Swiss-Prot
Match: Q8LBC0 (Cyclin-T1-3 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-3 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 5.8e-12
Identity = 31/46 (67.39%), Postives = 41/46 (89.13%), Query Frame = 0


Query: 91  SRWYFSRKELEEYSPSKQDGIDLKKETYLRKSYCTFLRDLGMRLKV 137
           S+WYFSR+E+E +SPS++DGIDL KE++LR SYCTFL+ LGM+L V
Sbjct: 32  SKWYFSREEIERFSPSRKDGIDLVKESFLRSSYCTFLQRLGMKLHV 77

The following BLAST results are available for this feature:

BLAST of Lag0011630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038901562.1	1.3e-32	94.87	cyclin-T1-3-like isoform X3 [Benincasa hispida]	[more]
XP_038901559.1	1.3e-32	94.87	cyclin-T1-3-like isoform X1 [Benincasa hispida]	[more]
KAG6604719.1	2.8e-32	91.25	Cyclin-T1-3, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022947953.1	4.9e-32	92.31	cyclin-T1-3-like isoform X2 [Cucurbita moschata]	[more]
XP_022947951.1	4.9e-32	92.31	cyclin-T1-3-like isoform X1 [Cucurbita moschata] >XP_022947952.1 cyclin-T1-3-lik...	[more]

BLAST of Lag0011630 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QQS5	9.2e-18	64.86	Cyclin-T1-4 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-1 PE=2 SV=1	[more]
Q2RAC5	4.6e-17	60.00	Cyclin-T1-3 OS=Oryza sativa subsp. japonica OX=39947 GN=CYCT1-3 PE=3 SV=2	[more]
Q9FKE6	1.0e-16	60.53	Cyclin-T1-5 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-5 PE=1 SV=2	[more]
Q8GYM6	5.6e-15	57.89	Cyclin-T1-4 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-4 PE=1 SV=1	[more]
Q8LBC0	5.8e-12	67.39	Cyclin-T1-3 OS=Arabidopsis thaliana OX=3702 GN=CYCT1-3 PE=1 SV=2	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.472.10		coord: 80..136 e-value: 3.5E-11 score: 44.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 54..88
None	No IPR available	PANTHER	PTHR10026:SF134	SUBFAMILY NOT NAMED	coord: 61..136
IPR043198	Cyclin/Cyclin-like subunit Ssn8	PANTHER	PTHR10026	CYCLIN	coord: 61..136
IPR036915	Cyclin-like superfamily	SUPERFAMILY	47954	Cyclin-like	coord: 90..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011630.1	Lag0011630.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007049	cell cycle
biological_process	GO:0051301	cell division
biological_process	GO:0050790	regulation of catalytic activity
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
molecular_function	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity