Lag0011612 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011612
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotrans_gag domain-containing protein
Locationchr1: 29081414 .. 29082347 (-)
RNA-Seq ExpressionLag0011612
SyntenyLag0011612
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCTGCAGGTGGGACTCTGTTGTCGAAGATCATGGAGAACACGCGCACACTTCTGGAGGATATGGCCACCAACAGCTATCTGGTCATCTGAGTGGGCTGCACCTAAAAAGATTGATGCTAGAGTGTTCGAGATTTACAACGTAAGTGCACTTCAGGCCCAAATGTCTTCCCTTCCTTATGCTTTTCTGAAATTTTCAGGTACAGGGAGTGCTCAATCGATAGAGTCTGCAGTTGCCCTTGCATCACAGTCTTAGGAGGAGAATCTTGAGCAGGTTTAATATGTTCCTAATTTTAATTCTAGGGGATATAATAATAATTCTACACCTACACATTATCACCCTAGTAATAGAAATCATGAGAACTTCTCCTATAAAAATAATAAAAATGTGTTAAATCCTCCTGGTTTTGCCCCTCAAAGTCAAGAAAGTAAAAAATCTTTAGAAGATCTTGTTGGAGCTTTTATTGCAGAATCAAGTAATAAGACGAACAAGCTAGAGGAGGCCGTGATTGCCATAAACACTAGATGGCCATTTTGCAGCCATCAAGAACATTAAGACTCAGCTAGGACAACTGGTAAGTGTTGTCAACACTATGAACAAAGGTAAGGCCCTAGTTGACCAGGAAAAATCTCAGTTGGAGTACTGCAAGGCCATCACTGTGCATCAGGAGGAGGAGACTCAAGTAGCTGAGGAGGAGGAGACTACTGAACTAGAGGAACTTACTGACGAAGCTGAAGAGGGAACCACTTCAAACAAAGCTGAAAAGCTTAATCTTGAGCCCTCTATCCCTTCTCCTACTGTTTTAGTTCCTAATTTAAAGAATAAGAAAAAGAAAAATTCTAAGGCTAAGTTTGAAAAATTTCTAGATGCTTTTATGGGATTGAATGTTAATATTCCTTTTTCAGATGCCCTGGAGCAAATGCCTCATTAG

mRNA sequence

ATGCAGCTGCAGGTGGGACTCTGTTGTCGAAGATCATGGAGAACACGCGCACACTTCTGGAGGATATGGCCACCAACAGCTATCTGGTCATCTGAGTGGGCTGCACCTAAAAAGATTGATGCTAGAGTGTTCGAGATTTACAACGTAAGTGCACTTCAGGCCCAAATGTCTTCCCTTCCTTATGCTTTTCTGAAATTTTCAGCCATCAAGAACATTAAGACTCAGCTAGGACAACTGGTAAGTGTTGTCAACACTATGAACAAAGGTAAGGCCCTAGTTGACCAGGAAAAATCTCAGTTGGAGTACTGCAAGGCCATCACTGTGCATCAGGAGGAGGAGACTCAAGTAGCTGAGGAGGAGGAGACTACTGAACTAGAGGAACTTACTGACGAAGCTGAAGAGGGAACCACTTCAAACAAAGCTGAAAAGCTTAATCTTGAGCCCTCTATCCCTTCTCCTACTGTTTTAGTTCCTAATTTAAAGAATAAGAAAAAGAAAAATTCTAAGGCTAAGTTTGAAAAATTTCTAGATGCTTTTATGGGATTGAATGTTAATATTCCTTTTTCAGATGCCCTGGAGCAAATGCCTCATTAG

Coding sequence (CDS)

ATGCAGCTGCAGGTGGGACTCTGTTGTCGAAGATCATGGAGAACACGCGCACACTTCTGGAGGATATGGCCACCAACAGCTATCTGGTCATCTGAGTGGGCTGCACCTAAAAAGATTGATGCTAGAGTGTTCGAGATTTACAACGTAAGTGCACTTCAGGCCCAAATGTCTTCCCTTCCTTATGCTTTTCTGAAATTTTCAGCCATCAAGAACATTAAGACTCAGCTAGGACAACTGGTAAGTGTTGTCAACACTATGAACAAAGGTAAGGCCCTAGTTGACCAGGAAAAATCTCAGTTGGAGTACTGCAAGGCCATCACTGTGCATCAGGAGGAGGAGACTCAAGTAGCTGAGGAGGAGGAGACTACTGAACTAGAGGAACTTACTGACGAAGCTGAAGAGGGAACCACTTCAAACAAAGCTGAAAAGCTTAATCTTGAGCCCTCTATCCCTTCTCCTACTGTTTTAGTTCCTAATTTAAAGAATAAGAAAAAGAAAAATTCTAAGGCTAAGTTTGAAAAATTTCTAGATGCTTTTATGGGATTGAATGTTAATATTCCTTTTTCAGATGCCCTGGAGCAAATGCCTCATTAG

Protein sequence

MQLQVGLCCRRSWRTRAHFWRIWPPTAIWSSEWAAPKKIDARVFEIYNVSALQAQMSSLPYAFLKFSAIKNIKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVHQEEETQVAEEEETTELEELTDEAEEGTTSNKAEKLNLEPSIPSPTVLVPNLKNKKKKNSKAKFEKFLDAFMGLNVNIPFSDALEQMPH
Homology
BLAST of Lag0011612 vs. NCBI nr
Match: XP_024032903.1 (uncharacterized protein LOC112095347 [Morus notabilis])

HSP 1 Score: 71.6 bits (174), Expect = 8.4e-09
Identity = 48/132 (36.36%), Postives = 80/132 (60.61%), Query Frame = 0

Query: 67  SAIKNIKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVHQEEETQVAE-EEETTEL 126
           + +K+++ Q+GQL +VV   + GK   D E +  ++CKAIT+   +E +  + +E+ TE 
Sbjct: 359 ATMKSLEVQIGQLANVVKGQSSGKFPSDTEPNPKDHCKAITLRSGKEVEAPKPQEDKTEE 418

Query: 127 EELTDEAEEGTTSNKAEKLNLEPSIPSPTVLVPNLKNKKKKNSKAKFEKFLDAFMGLNVN 186
           EE+  E  + +   K+      P + +PT+  P  +  KKK   A+F KFL+ F  +++N
Sbjct: 419 EEVGTEQLKESARPKSISFPDNPPLITPTLPYP--QRFKKKKLDAQFLKFLEIFKKIHIN 478

Query: 187 IPFSDALEQMPH 198
           IPF+DALEQMP+
Sbjct: 479 IPFTDALEQMPN 488

BLAST of Lag0011612 vs. NCBI nr
Match: XP_024029937.1 (uncharacterized protein LOC112094091 [Morus notabilis])

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-07
Identity = 45/132 (34.09%), Postives = 78/132 (59.09%), Query Frame = 0

Query: 67  SAIKNIKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVHQEEETQVAE-EEETTEL 126
           + +K+++ ++GQL + V   + GK   D E +  ++CKAIT+   +E +  + +E+ T+ 
Sbjct: 273 ATMKSLEVKIGQLANAVKGQSSGKFPSDTEPNSKDHCKAITLRSGKEVEAPKPQEDKTKE 332

Query: 127 EELTDEAEEGTTSNKAEKLNLEPSIPSPTVLVPNLKNKKKKNSKAKFEKFLDAFMGLNVN 186
           EE+  E  + +   K+      P + +PT+  P  +  KKK   A+F KFL+ F  +++N
Sbjct: 333 EEVGTEQPKESARPKSISFLDNPPLIAPTLPYP--QRFKKKKLDAQFSKFLEIFKKIHIN 392

Query: 187 IPFSDALEQMPH 198
           IPF DALEQMP+
Sbjct: 393 IPFVDALEQMPN 402

BLAST of Lag0011612 vs. NCBI nr
Match: XP_024024249.1 (uncharacterized protein LOC112092388 [Morus notabilis])

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-07
Identity = 42/126 (33.33%), Postives = 75/126 (59.52%), Query Frame = 0

Query: 72  IKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVHQEEETQVAEEEETTELEELTDE 131
           ++TQ+GQL   + +++ G    D  K+  E C A+T+  E+E +  + +E  + +E   E
Sbjct: 1   METQIGQLADSMKSLSSGSFPSDTVKNPKEQCNAVTLRSEKEVEALKPQE-DKTKEKEVE 60

Query: 132 AEEGTTSNKAEKLNLEPSIPSPTVLVPNLKNKKKKNSKAKFEKFLDAFMGLNVNIPFSDA 191
           +++   S + + ++   + P  T  +P  +  KKKN  A+F KFL+ F  +++NIPF+DA
Sbjct: 61  SKQPKESARPKSISFLDNPPLITPTLPYPQRFKKKNMDAQFSKFLEIFKKIHINIPFADA 120

Query: 192 LEQMPH 198
           LEQMP+
Sbjct: 121 LEQMPN 125

BLAST of Lag0011612 vs. NCBI nr
Match: KAG7947748.1 (hypothetical protein I3843_14G109500 [Carya illinoinensis])

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-06
Identity = 46/144 (31.94%), Postives = 78/144 (54.17%), Query Frame = 0

Query: 67  SAIKNIKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVHQEEETQVAEEEETTELE 126
           + +KN++ Q+GQL + +N   +G    + E +  E CKAIT+   +E + A  +E+    
Sbjct: 374 ATMKNLEVQIGQLATTINAQQRGAFPSNTEVNPKEQCKAITLRSGKEIERAPLKESKSTP 433

Query: 127 ELTDEA-------EEGTTSNKAEKLNLEPSI---PSPTVLVPNL---KNKKKKNSKAKFE 186
              +         EE   ++  E+ +L P+I    +P +L P L   +  +K+    +F 
Sbjct: 434 TAANNGQSKDQVEEEEIVNDTLEETDLPPTISFPDNPPILAPPLPYPQRFQKQKLDKQFS 493

Query: 187 KFLDAFMGLNVNIPFSDALEQMPH 198
           KFLD F  +++NIPF+DALEQMP+
Sbjct: 494 KFLDIFKKIHINIPFADALEQMPN 517

BLAST of Lag0011612 vs. NCBI nr
Match: KAG6734747.1 (hypothetical protein I3842_01G285500 [Carya illinoinensis])

HSP 1 Score: 63.5 bits (153), Expect = 2.3e-06
Identity = 46/144 (31.94%), Postives = 78/144 (54.17%), Query Frame = 0

Query: 67  SAIKNIKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVHQEEETQVAEEEETTELE 126
           + +KN++ Q+GQL + +N   +G    + E +  E CKAIT+   +E + A  +E+    
Sbjct: 374 ATMKNLEVQIGQLATTINAQQRGAFPSNTEVNPKEQCKAITLRSGKEIERAPLKESKSTP 433

Query: 127 ELTDEA-------EEGTTSNKAEKLNLEPSI---PSPTVLVPNL---KNKKKKNSKAKFE 186
              +         EE   ++  E+ +L P+I    +P +L P L   +  +K+    +F 
Sbjct: 434 TAANNGQSKDQVEEEEIVNDTLEETDLPPTISFPDNPPILAPPLPYPQRFQKQKLDKQFS 493

Query: 187 KFLDAFMGLNVNIPFSDALEQMPH 198
           KFLD F  +++NIPF+DALEQMP+
Sbjct: 494 KFLDIFKKIHINIPFADALEQMPN 517

BLAST of Lag0011612 vs. ExPASy TrEMBL
Match: A0A1U8PZ99 (uncharacterized protein LOC104589245 OS=Nelumbo nucifera OX=4432 GN=LOC104589245 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-06
Identity = 46/136 (33.82%), Postives = 77/136 (56.62%), Query Frame = 0

Query: 67  SAIKNIKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVH-----QEEETQVAEEEE 126
           ++IKN++TQ+GQL  ++++  +G    + E +  E  +AIT+      QE E +  EE +
Sbjct: 17  ASIKNLETQVGQLAQMISSRVQGTLPSNTEANPREQVQAITLRSGKELQEVEKKTKEEGK 76

Query: 127 TTELEELTDEAEEGTTSNKAEKLNLEPSIPSPTVLVPNLKNKKKKNSKAKFEKFLDAFMG 186
           T    E  ++ EE   S K  + + +P +P P  L       K+   + +F++FL+ F  
Sbjct: 77  TGATLETGEKEEEQADSRK--ETSQKPQLPFPNRL-------KQHKMEKEFDEFLEIFKS 136

Query: 187 LNVNIPFSDALEQMPH 198
           L++NIPF+DAL QMPH
Sbjct: 137 LHINIPFADALAQMPH 143

BLAST of Lag0011612 vs. ExPASy TrEMBL
Match: A0A1U7ZI47 (uncharacterized protein LOC104590859 OS=Nelumbo nucifera OX=4432 GN=LOC104590859 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 2.5e-06
Identity = 47/137 (34.31%), Postives = 80/137 (58.39%), Query Frame = 0

Query: 67  SAIKNIKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVHQEEETQVAEEEET---- 126
           ++IKN++TQ+GQL  ++++  +G    + E +  E  +AIT+ + +E Q  E++      
Sbjct: 217 ASIKNLETQVGQLAQMISSRVQGTLPSNTEANPREQVQAITLSRGKELQEVEKKAKEEGK 276

Query: 127 --TELEELTDEAEEGTTSNKAEKLNLEPSIPSPTVLVPNLKNKKKKNSKAKFEKFLDAFM 186
             T LE  T++ EE  + +K +K + +P +P P  L       K+   + +F KFL+ F 
Sbjct: 277 MGTTLE--TEKKEEEQSDSKKDK-SQQPQVPFPNRL-------KQHKLEKEFGKFLEIFK 336

Query: 187 GLNVNIPFSDALEQMPH 198
            L++NIPF+DAL QMPH
Sbjct: 337 SLHINIPFADALAQMPH 343

BLAST of Lag0011612 vs. ExPASy TrEMBL
Match: A0A1U7Z0W9 (uncharacterized protein LOC104589888 OS=Nelumbo nucifera OX=4432 GN=LOC104589888 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 4.2e-06
Identity = 45/135 (33.33%), Postives = 76/135 (56.30%), Query Frame = 0

Query: 67  SAIKNIKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVHQ----EEETQVAEEEET 126
           S+I N++ Q+GQL +V++  N+G    + E +  E  KAI++      E +  V  +   
Sbjct: 14  SSIHNLEVQIGQLANVISARNQGNLPSNIETNPREQLKAISLRSGKVLEPKQDVQSKRTG 73

Query: 127 TELEELTDEAEEGTTSNKAEKLNLEPSIPSPTVL-VPNLKNKKKKNSKAKFEKFLDAFMG 186
           T++E   +E  + +  N+ +K N   +  SP V  +P  +  KK+ ++ +F KFLD F  
Sbjct: 74  TDVEIYDEETIDKSEDNQGDKGNHSNAQRSPYVTRIPFPQRLKKQQTEQQFSKFLDIFKK 133

Query: 187 LNVNIPFSDALEQMP 197
           L +NIPF++AL QMP
Sbjct: 134 LQINIPFAEALAQMP 148

BLAST of Lag0011612 vs. ExPASy TrEMBL
Match: A0A151TZJ8 (Retrotrans_gag domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_005056 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.1e-05
Identity = 42/146 (28.77%), Postives = 74/146 (50.68%), Query Frame = 0

Query: 67  SAIKNIKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVH----------QEEETQV 126
           ++IKN++ Q+GQL   +     G    + + +  E+CK +              ++E +V
Sbjct: 266 ASIKNLEVQVGQLAKQLADQKSGSFSANTQTNSKEHCKVVATRSGKTFGESNPSDKEKKV 325

Query: 127 ------AEEEETTELEELTDEAEEGTTSNKAEKLNLEPSIPSPTVLVPNLKNKKKKNSKA 186
                 AE+++ + +EE+ ++   G    K +K+  E     PT  +P      +K+ + 
Sbjct: 326 MKDNSEAEDKDESVVEEVENKRVSGEIEKKKKKIEKEVGKAPPTKNLPYPHAPSRKDKER 385

Query: 187 KFEKFLDAFMGLNVNIPFSDALEQMP 197
           +F +FLD F  L +NIPFS+ALEQMP
Sbjct: 386 QFARFLDIFKRLQINIPFSEALEQMP 411

BLAST of Lag0011612 vs. ExPASy TrEMBL
Match: A0A151T9N8 (Retrotrans_gag domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_018335 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.7e-05
Identity = 38/133 (28.57%), Postives = 71/133 (53.38%), Query Frame = 0

Query: 67  SAIKNIKTQLGQLVSVVNTMNKGKALVDQEKSQLEYCKAITVHQEEETQV---AEEEETT 126
           ++I+N++ Q+GQL   +          + + +  E+C  + +  E+E ++   AE+ E  
Sbjct: 340 ASIRNLEVQIGQLAKQLADQQSKNFSANTQVNPKEHCYEVELESEKEVELNKEAEKNEKN 399

Query: 127 ELEELTDEAEEGTTSNKAEKLNLEPSIPSPTVLVPNLKNKKKKNSKAKFEKFLDAFMGLN 186
           ++E   +E+ +G    +++K   E   P P   +P      KK+ + +F +FLD    L 
Sbjct: 400 KIESEKNESGDGDVKEESKKKGKEVVRPPPVKNLPYPHAPSKKDKERQFARFLDIIKRLQ 459

Query: 187 VNIPFSDALEQMP 197
           +NIPF++ALEQMP
Sbjct: 460 INIPFAEALEQMP 472

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_024032903.18.4e-0936.36uncharacterized protein LOC112095347 [Morus notabilis][more]
XP_024029937.11.2e-0734.09uncharacterized protein LOC112094091 [Morus notabilis][more]
XP_024024249.12.1e-0733.33uncharacterized protein LOC112092388 [Morus notabilis][more]
KAG7947748.12.3e-0631.94hypothetical protein I3843_14G109500 [Carya illinoinensis][more]
KAG6734747.12.3e-0631.94hypothetical protein I3842_01G285500 [Carya illinoinensis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1U8PZ992.5e-0633.82uncharacterized protein LOC104589245 OS=Nelumbo nucifera OX=4432 GN=LOC104589245... [more]
A0A1U7ZI472.5e-0634.31uncharacterized protein LOC104590859 OS=Nelumbo nucifera OX=4432 GN=LOC104590859... [more]
A0A1U7Z0W94.2e-0633.33uncharacterized protein LOC104589888 OS=Nelumbo nucifera OX=4432 GN=LOC104589888... [more]
A0A151TZJ82.1e-0528.77Retrotrans_gag domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_005056 ... [more]
A0A151T9N82.7e-0528.57Retrotrans_gag domain-containing protein OS=Cajanus cajan OX=3821 GN=KK1_018335 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 111..131
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..132
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 114..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011612.1Lag0011612.1mRNA