Lag0011603 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011603
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr1: 28811775 .. 28812725 (+)
RNA-Seq Expression	Lag0011603
Synteny	Lag0011603

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTGTTGAATGTGTTTAATTGTGGGCGCATGGCGAATCAAGCTTACATGTCTTTTGGCATTGTAAGTTTGTAAAGAGGGTTTTGACGGATTTTGAGTTTGGGATGTTGGTAAACAATGTGCAGGCAGAGTCTATTTTCAATCTCCTCAGAGAAGTGAGGGATAAGGTGGGATGGGGGAAATTCGAGTTGTTTGTGGTGGTGGTGTGGTCTGTGTGGAATTGCCACAACTAGAGTAAATTCAAGGGATTGGGTCCGTGGAGGAACTAGTGGATTGGGTGGGGAGTTACATCTCTTCGTTCCAGCAGGCTACCTTGTCTAGTGAGTTGTGTAGGCATAGAGGGACTATAAAGGAATAGATAAGATGGAGTCCCCCGATTTTTGGTTGGTATAAGGTGAACGTTGATGCAGCTTTTCAAAGAGAGGGATGGTAGACAGGTTTGGGGGTGGTGGTTTGGGATTTTGTCGGGCAGGTTATGCTGTTGGCATCGCTGGTGCAACAGCATGTATGGAGCCCGAAGATGGCCGAGGGTTGCGCTGCTATGAAGGGCATGAGACTGGCTTTGGAGATGGGTTTGTTCCCACTGGTGTTGGAGACCGACTCTAGTCGAGTGGCTGATGTTTTTCAGAACGAGGCAGTGGATGACTATTCTGATTTAGGTGTGCTAGTGGTTGATCTACGAAAGGATCTACCAGGGTCTTCTTCTGTCGGCTGTATGTTTACCCGAAGAGAGGGAAATGGAGTGGCTCATCAATTGGCTCGTTGGGCAATGAGAGAGGAAGATTCTATGGTATGGATGGAATCTGTACCTCAATGTATGGAGGCATTGGTCATTTCTAATATGGTTTTGGTGTAATTGTTTTTGCAGGTGGTGATAGAGCTCTAGACAAGTCATGGTCAGGAATGGAAAAGAAAACCAAGATAAAGAGTGACAAGCCTAAGCAGTAA

mRNA sequence

ATGGATGTGTTGAATGTGTTTAATTGTGGGCGCATGGCGAATCAAGCTTACATGTCTTTTGGCATTGTTATGCTGTTGGCATCGCTGGTGCAACAGCATGTATGGAGCCCGAAGATGGCCGAGGGTTGCGCTGCTATGAAGGGCATGAGACTGGCTTTGGAGATGGGTTTGTTCCCACTGGTGTTGGAGACCGACTCTAGTCGAGTGGCTGATGTTTTTCAGAACGAGGCAGTGGATGACTATTCTGATTTAGGTGTGCTAGTGGTTGATCTACGAAAGGATCTACCAGGGTCTTCTTCTGTCGGCTGTGGTGATAGAGCTCTAGACAAGTCATGGTCAGGAATGGAAAAGAAAACCAAGATAAAGAGTGACAAGCCTAAGCAGTAA

Coding sequence (CDS)

ATGGATGTGTTGAATGTGTTTAATTGTGGGCGCATGGCGAATCAAGCTTACATGTCTTTTGGCATTGTTATGCTGTTGGCATCGCTGGTGCAACAGCATGTATGGAGCCCGAAGATGGCCGAGGGTTGCGCTGCTATGAAGGGCATGAGACTGGCTTTGGAGATGGGTTTGTTCCCACTGGTGTTGGAGACCGACTCTAGTCGAGTGGCTGATGTTTTTCAGAACGAGGCAGTGGATGACTATTCTGATTTAGGTGTGCTAGTGGTTGATCTACGAAAGGATCTACCAGGGTCTTCTTCTGTCGGCTGTGGTGATAGAGCTCTAGACAAGTCATGGTCAGGAATGGAAAAGAAAACCAAGATAAAGAGTGACAAGCCTAAGCAGTAA

Protein sequence

MDVLNVFNCGRMANQAYMSFGIVMLLASLVQQHVWSPKMAEGCAAMKGMRLALEMGLFPLVLETDSSRVADVFQNEAVDDYSDLGVLVVDLRKDLPGSSSVGCGDRALDKSWSGMEKKTKIKSDKPKQ

Homology

The following BLAST results are available for this feature:

BLAST of Lag0011603 vs.


Match Name	E-value	Identity	Description

BLAST of Lag0011603 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 21..93 e-value: 5.7E-7 score: 29.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 110..128
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011603.1	Lag0011603.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity