Lag0011569 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011569
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr1: 27887222 .. 27887587 (-)
RNA-Seq ExpressionLag0011569
SyntenyLag0011569
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAGGAAGTGCATCCACCAACTTTTCAGACATCATGATGATTGGAGAAATAATAGAATACGGGGTTAAGCAGGGAAGGATATTCGATGATGCAATTGAATCATCAATCGAAGACGAAGAAGACTACTCAAAGGATCAACAAGTCCAAGTAATATTTTCTACGCCAAGACTCATGCACAACTACAAAGGAAATCGACAAAGTTCTCCTCAAAGCCATTTGTTTGTTCACCTATTTTGCAGCACAACCAACAAGGTTGACTGTTTCTTACAATCATAATGGTAATAGGCAACAAAGGTGGAGAATGTCGATCCAATACCAATTGCATTTATCGAGTCTTCGTCGTGCTTATTCTGGAAAAACTAG

mRNA sequence

ATGATAGGAAGTGCATCCACCAACTTTTCAGACATCATGATGATTGGAGAAATAATAGAATACGGGGTTAAGCAGGGAAGGATATTCGATGATGCAATTGAATCATCAATCGAAGACGAAGAAGACTACTCAAAGGATCAACAAGTCCAAGCAACAAAGGTGGAGAATGTCGATCCAATACCAATTGCATTTATCGAGTCTTCGTCGTGCTTATTCTGGAAAAACTAG

Coding sequence (CDS)

ATGATAGGAAGTGCATCCACCAACTTTTCAGACATCATGATGATTGGAGAAATAATAGAATACGGGGTTAAGCAGGGAAGGATATTCGATGATGCAATTGAATCATCAATCGAAGACGAAGAAGACTACTCAAAGGATCAACAAGTCCAAGCAACAAAGGTGGAGAATGTCGATCCAATACCAATTGCATTTATCGAGTCTTCGTCGTGCTTATTCTGGAAAAACTAG

Protein sequence

MIGSASTNFSDIMMIGEIIEYGVKQGRIFDDAIESSIEDEEDYSKDQQVQATKVENVDPIPIAFIESSSCLFWKN
Homology
[Close]
BLAST of Lag0011569 vs. NCBI nr
Match: XP_022143495.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia])

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-04
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 0 

Query: 1   MIGSASTNFSDIMMIGEIIEYGVKQGRIFDDAIESSIEDEEDYSKDQQVQATKVENVDPI 60
           M+GSASTNFSDIM IGE IEYGV+ GRI   A E     +  +SK ++ +   V  VDPI
Sbjct: 253 MVGSASTNFSDIMAIGERIEYGVRHGRITSTADEPLAAKKTSHSKKKEGELAHVP-VDPI 311

[Close]
BLAST of Lag0011569 vs. NCBI nr
Match: XP_016903339.1 (PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo])

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-04
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 1   MIGSASTNFSDIMMIGEIIEYGVKQGRIFDDAIE 35
           M+GSASTNFSD++ IGE+IE+GVK GRIFD + E
Sbjct: 287 MVGSASTNFSDVITIGEMIEFGVKNGRIFDPSSE 320

[Close]
BLAST of Lag0011569 vs. NCBI nr
Match: KAA0037703.1 (uncharacterized protein E6C27_scaffold1593G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 53.5 bits (127), Expect = 9.0e-04
Identity = 24/34 (70.59%), Postives = 30/34 (88.24%), Query Frame = 0 

Query: 1   MIGSASTNFSDIMMIGEIIEYGVKQGRIFDDAIE 35
           M+GSASTNFSD++ IGE+IE+GVK GRIFD + E
Sbjct: 287 MVGSASTNFSDVITIGEMIEFGVKNGRIFDPSSE 320

The following BLAST results are available for this feature:
BLAST of Lag0011569 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022143495.19.0e-0453.33LOW QUALITY PROTEIN: uncharacterized protein LOC111013372 [Momordica charantia][more]
XP_016903339.19.0e-0470.59PREDICTED: uncharacterized protein LOC103502838 [Cucumis melo][more]
KAA0037703.19.0e-0470.59uncharacterized protein E6C27_scaffold1593G00270 [Cucumis melo var. makuwa][more]
BLAST of Lag0011569 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011569.1Lag0011569.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
molecular_function GO:0003964 RNA-directed DNA polymerase activity