Lag0011565 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011565
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionglutamic acid-rich protein
Locationchr1: 27835342 .. 27835791 (+)
RNA-Seq ExpressionLag0011565
SyntenyLag0011565
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGATTCTTCGTCTGATTCAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTATGATACAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTCTGATACAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTATGATACAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTCTGATACAGAGGAAGAAATGAAGGATGTTTCAGATGTAAAGAAAGAAATGAAGGATGCTTCTGATACAGAGGAAGAAATGAAGGATGCTTCTGATAAAGAAACTGAAGAAAGGAATGGGCTTTCGAATGGAACTGAAGAAACAAAGGACGATTCAAGTCTAGTTAGAAACGATTCGGATGAAGGTGAAAGATAA

mRNA sequence

ATGAAGGATTCTTCGTCTGATTCAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTATGATACAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTCTGATACAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTATGATACAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTCTGATACAGAGGAAGAAATGAAGGATGTTTCAGATGTAAAGAAAGAAATGAAGGATGCTTCTGATACAGAGGAAGAAATGAAGGATGCTTCTGATAAAGAAACTGAAGAAAGGAATGGGCTTTCGAATGGAACTGAAGAAACAAAGGACGATTCAAGTCTAGTTAGAAACGATTCGGATGAAGGTGAAAGATAA

Coding sequence (CDS)

ATGAAGGATTCTTCGTCTGATTCAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTATGATACAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTCTGATACAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTATGATACAGAGGAAGAAATGAAGGATGCTTCAGATGTAAAGGAAGAAATGAAGAGTGCTTCTGATACAGAGGAAGAAATGAAGGATGTTTCAGATGTAAAGAAAGAAATGAAGGATGCTTCTGATACAGAGGAAGAAATGAAGGATGCTTCTGATAAAGAAACTGAAGAAAGGAATGGGCTTTCGAATGGAACTGAAGAAACAAAGGACGATTCAAGTCTAGTTAGAAACGATTCGGATGAAGGTGAAAGATAA

Protein sequence

MKDSSSDSEEEMKDASDVKEEMKSAYDTEEEMKDASDVKEEMKSASDTEEEMKDASDVKEEMKSAYDTEEEMKDASDVKEEMKSASDTEEEMKDVSDVKKEMKDASDTEEEMKDASDKETEERNGLSNGTEETKDDSSLVRNDSDEGER
Homology
BLAST of Lag0011565 vs. NCBI nr
Match: XP_038883573.1 (acidic repeat-containing protein [Benincasa hispida])

HSP 1 Score: 94.7 bits (234), Expect = 7.0e-16
Identity = 81/155 (52.26%), Postives = 104/155 (67.10%), Query Frame = 0

Query: 2   KDSSSDSEEEMKDASDVKEEMKSAYDTEEEMKDASDVKEEMKSASDTEEEMKDASDVKEE 61
           K+ + D+    K+  + KEE K A + +EE K+AS+ KEE + AS++ EE KDAS+ KEE
Sbjct: 463 KEEAKDASSNEKETKEEKEETKDASNEKEETKNASNEKEETRDASNSTEETKDASNAKEE 522

Query: 62  MKSAYDTEEEMKDASDVKEEMKSASDTEEEMKDVSDVKKEMKDASDTEEEMKDASD---- 121
           MK+  D+EEEMK+ SD +EEMK+ SD +EE KD SDVK+E KD SD+EEE KD SD    
Sbjct: 523 MKNGSDSEEEMKNGSDSEEEMKNDSDIKEEKKDDSDVKEEKKDDSDSEEEKKDGSDAAEE 582

Query: 122 ---KETEERNGLSNGTEETKDDSSLVRNDSDEGER 150
              KE EER       EE KD S++VRND DE ER
Sbjct: 583 EVKKEIEERK-----EEERKDASNVVRNDPDEAER 612

BLAST of Lag0011565 vs. NCBI nr
Match: XP_031739873.1 (FK506-binding protein 5 [Cucumis sativus] >KAE8649769.1 hypothetical protein Csa_012392 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 1.3e-09
Identity = 79/159 (49.69%), Postives = 103/159 (64.78%), Query Frame = 0

Query: 5   SSDSEEEMKDASDVKEEMKSAYDTEEEMKDASDVKEEMKSASDTEEEMKDASDVKEEMKS 64
           +S  +EE KDASD KEE   A   +EE  DAS+ K E K  S++ EE  D S+ K +MK 
Sbjct: 495 ASSEKEETKDASDKKEEAHDASSEKEETNDASNEK-ETKDLSNSTEETNDGSNAKGKMKD 554

Query: 65  AYDTEEEMKDASDVK-EEMKSASDTEEEMKDVSDVK-KEMKDASDT-EEEMKDASDKETE 124
             D+EEEMK+ASDVK EE+K+ SD+EEEMK+ SDVK +EMK+ASD  EEE+K+ SD E E
Sbjct: 555 DSDSEEEMKNASDVKEEEVKNDSDSEEEMKNDSDVKEEEMKNASDVKEEEVKNDSDSEEE 614

Query: 125 ERNGLS-----------NGTEETKDDSSLVRNDSDEGER 150
               L+           +  EE KD S++V++D DE ER
Sbjct: 615 NNYDLAKVEEVKKESEESKEEEKKDASNVVKDDEDEAER 652

BLAST of Lag0011565 vs. NCBI nr
Match: XP_008442263.1 (PREDICTED: glutamic acid-rich protein [Cucumis melo])

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-07
Identity = 77/163 (47.24%), Postives = 95/163 (58.28%), Query Frame = 0

Query: 2   KDSSSDSEEEMKDA------------SDVKEEMKSAYDTEEEMKDASDVKEEMKSASDTE 61
           KD S  +EEE KDA            S V EE K    T EEMKDASD KEE   AS  +
Sbjct: 395 KDGSIGTEEERKDASTTAIEEREVIMSSVIEETKDTSKTTEEMKDASDKKEEANDASSEK 454

Query: 62  EEMKDASDVKEEMKSAYDTEEEMKDASDVKEEMKSASDTEEEMKDVSDVKKEMKDASDTE 121
           +E KDASD KEE  +  +  EE +DASD K+E   AS  +EE KD S+ K+E  DAS  +
Sbjct: 455 QETKDASDKKEEASNVSNENEETRDASD-KKEASDASSEKEETKDASEKKEEASDASSEK 514

Query: 122 EEMKDAS-DKETEERNGLSNGTEETKDDSSL---VRNDSDEGE 149
           EE  D S +KET++   LSN TEET D S+    +++DSD  E
Sbjct: 515 EETNDTSNEKETKD---LSNSTEETNDGSNAKGKMKDDSDSEE 553

BLAST of Lag0011565 vs. NCBI nr
Match: TYK29843.1 (glutamic acid-rich protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 1.6e-07
Identity = 77/163 (47.24%), Postives = 95/163 (58.28%), Query Frame = 0

Query: 2   KDSSSDSEEEMKDA------------SDVKEEMKSAYDTEEEMKDASDVKEEMKSASDTE 61
           KD S  +EEE KDA            S V EE K    T EEMKDASD KEE   AS  +
Sbjct: 395 KDGSIGTEEERKDASTTAIEEREVIMSSVIEETKDTSKTTEEMKDASDKKEEANDASSEK 454

Query: 62  EEMKDASDVKEEMKSAYDTEEEMKDASDVKEEMKSASDTEEEMKDVSDVKKEMKDASDTE 121
           +E KDASD KEE  +  +  EE +DASD K+E   AS  +EE KD S+ K+E  DAS  +
Sbjct: 455 QETKDASDKKEEASNVSNENEETRDASD-KKEASDASSEKEETKDASEKKEEASDASSEK 514

Query: 122 EEMKDAS-DKETEERNGLSNGTEETKDDSSL---VRNDSDEGE 149
           EE  D S +KET++   LSN TEET D S+    +++DSD  E
Sbjct: 515 EETNDTSNEKETKD---LSNSTEETNDGSNAKGKMKDDSDSEE 553

BLAST of Lag0011565 vs. NCBI nr
Match: MBQ6497795.1 (Hpt domain-containing protein [Bacilli bacterium])

HSP 1 Score: 65.1 bits (157), Expect = 5.9e-07
Identity = 59/135 (43.70%), Postives = 88/135 (65.19%), Query Frame = 0

Query: 4   SSSDSEEEMKDASDVKEEMKSAYDTEEEMKDASDVKEEMKSASDTEEEMKDASDVKEEMK 63
           S   +EE+ ++ S+VKEE KS   TEE+ ++ S+VKEE KS   TEE+ ++ S+VKEE K
Sbjct: 4   SEESTEEKKEETSEVKEEPKSEESTEEKKEEVSEVKEEPKSEESTEEKKEETSEVKEEPK 63

Query: 64  SAYDTEEEMKDASDVKEEMKSASDTEEEMKDVSDVKKEMKDASDTEEEMKDASDKETEER 123
           S   TEE+ ++ S+VKEE KS   TEE+ ++VS+VK+E K     EE+ ++ S  E +E 
Sbjct: 64  SEESTEEKKEEVSEVKEEPKSEESTEEKKEEVSEVKEETKSEEPAEEKKEEVS--EVKEE 123

Query: 124 NGLSNGTEETKDDSS 139
                 TEE K++S+
Sbjct: 124 TKSEESTEEKKEEST 136

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038883573.17.0e-1652.26acidic repeat-containing protein [Benincasa hispida][more]
XP_031739873.11.3e-0949.69FK506-binding protein 5 [Cucumis sativus] >KAE8649769.1 hypothetical protein Csa... [more]
XP_008442263.11.6e-0747.24PREDICTED: glutamic acid-rich protein [Cucumis melo][more]
TYK29843.11.6e-0747.24glutamic acid-rich protein [Cucumis melo var. makuwa][more]
MBQ6497795.15.9e-0743.70Hpt domain-containing protein [Bacilli bacterium][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 85..118
NoneNo IPR availableCOILSCoilCoilcoord: 35..65
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011565.1Lag0011565.1mRNA