Lag0011519 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011519
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol protein
Locationchr1: 26975050 .. 26980658 (+)
RNA-Seq ExpressionLag0011519
SyntenyLag0011519
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAATCAGAGTATGTTGCTGCATGTGAGGCAACAAAGGAAGCAGTATGGCTACGGAAGTTCCTGATAGGTTTGGAAGTTGTTCCAAACATGAACCTCCCCATAACTTTATACTGTGATAAAAATGGGGCAGTAGCCAATTCCAAAGAGCCTCGCAACCACAAACGAGGCAAACACATCGAGAGGAAATATAACCTGATTCGGGAGATAGTGCAACACGGAGAAGTGATTGTCACAAAGATCGCTTCAGAGCACAACATAGTTGATCCATTTCCGAAAACTCTCTCGGCTAAAGTGTTTGAGGGTCATCTACAAAGCTTAGGTCTACGAGATATGTATAACCTAGGGCAAGTGGGAGATATACAGGGTATAGGAGTGCCCTAGTTTATTGTATTTGTAACATTTCCTTGCTTTGGTATTATTTAAAAGCATATACATTTCCACTCACTAAAGTTTTAGTGCAAGTGGGAGTTTGTTGGGTTTTGTGCCATAAAACTCGTAGATAGTAAATGTAACACTTGACTTGCTTTAATAAGACGTTATTGATTATATATATTCATTTTGCCTAAATATAACCACAAATCCAATAAACTAAGAACCCCTGGCTATATTATGTATACTTGAAGTTTGTGTATCACATAAGTATGGATCAAGTTCAAGGGAATACCTTAAATGATCTATAGTATACGGATAAGGTTAGGTACCTTAATACTGGGGACACTATTGGTGCAACTCACTTTGTTTTCTAGAGACAAACGATGTGATCTTAATCGTTCATGTATAGACATATGAGCGAAGGCATCGTATGCAAGGAGTTTGCATAGAGATCAGACCAAGAGATAAGTCACTTTCGCTTTATAACACCGTTTACTACTGAAACTGAATATCTCATACGATGACTGATAGGACAAAATTAGTCCTATTTATTTGTTGTTAATCTTGGCCTATTAGAGTCCATTTTACGGTTTATTTGTCTATTTTTTTTAGATGATTTGTGCATTAAAAGCATCAGGGACGAATCACACAAATTGGAGCTAATCCGGGCGATTTAGAGAGTCTTCAAGCTAACTTGGAACCCACGGATCTCGAGGAAGTGAGAAGACCGAGCGGATCGTGACAAGCCCGAAGAATAGTCCCAAGGAGTCAAAGGTTCGAGTCCCAAACCGAGCAAGCAACAAAAGAAGACCAAAAGATGAAGTGAAGGCACGCTGGAATAGGGCATGGCGTTGAGACGTCGTGGCCAGCGTCTCGATGTTGGCCCGATTATGAAACTTTGGCCCAGAAGGTGTAGCGTCGAGACGTTGTGATTAATTTTCTATATAAACCTTCGGTTTTAGTTTGTCGTTAGGTCAGTAGGTCAGATTTTAGTTTTCTTTTATGATTGTTCTCTGTTCTTTTACTTTCAGACCTTAAATTGTATGAATCTTAATTGATTTTTGTTGTATTTCTTTCATTTGATTGTATTAGGTCACAGGTTTTAGTTGGCTTCACCGCCATCTAAACCCGTTGACGTCGTTTAGATGATTTTTGGGCAATAGAATGAGTTTATTTGTGAGTTTACTGTTCTGATTTCTCTTTTTAGTTTACATTGCCATTGTATTTTGGATTCAATTTGTAGAATAAGCATGCACAGTAGGTTAGGTTAACGCCCTAACTCGCAGCTCGTATGTTTGTTATTTGCTATTATTTGTAGTGCATAGACTAATTCATGGGCACGGGTCCCAAGAGCAGTTCACTAACTTTGTTGCTCTGCATGACAGGTCTAAGATCCAAAATAGCGTTAGGAATAATTTAGGGAAATTCGTTAGTTGTTTAGTTTGATGGGTTAATCAAATTAATTAATTAATCAATTAGGTTCTAATTCGATGGATGATGTATGATTGAGTTAGATAGCTTAGGTGGGCGTAGGGTCTTTCTTGGATTCAGGTTAGATCGTTTGGCAATTTAGCCGTTAATAGGTAGCGATTCGATGATCAAACAAACCATTCAACCCCATTAATCTCCCTAGTCTGAGACGTGCAATTAAATTAATTTTCCTGTTATTTTATGTTTTTTGCTATTTAATTTCTAGTCTTTTAATTTCATGCAACTTAAATTCATGTCTTTAGTTTACTGCATGTTATTTTCCCCTTCGCATGAAATCCCCCCTTTTACTGCTTTCCAACTCGCAATAAATAGAAAATAATTACCAACCTCCACTCCCTGTGGACGACCCGGCCACTACTACTGCAAGTAGTTTAGTGTTCGGAGTTTATAAATTTTAGTTGAGTTCAAGCCTCGACAACTCGTTCCCTTCAATGTCCTAGGTAACTCAATCTTAATCTTGAGCTAACTATGAACTCATGTTTATTTAGGATTGTCCTTTGATTTGCATGGGTGAGAGTGGCCAATCATCGTCGACTCAATAAGCCTACCATTTTGGGGATGAAACTGAATAGATAGCTGGGGACATAGTCTTGCAAGACGAAATTCACTGCTATCCGTTTTAGGGTTAGGGAGAAGGTTGTTCCCTTAAGTACTGACTCCGAGTCTTGGACAAGGGGCCCCACCCTCTCATAATCTTGAGAGGGACTTGGTTCAATGATTGTATCACAAACCAATTGTTCATTAGAGGATCAATTGAACTTAAGGAACAAGATGTAACTATAGGGGCAAAACAGACTTTTTGACCCAGCTCTAGTTCTAACTGGTGAAGGGTCGACTTACTAACCATGGTTATATCAAGTGGACAGAAATATATCTACAGTGAAGGGAGTGCAGCTACGGGCTATAGTGGAGTGTCCCGAAAACTAATGAATGTTGAATAACGAGGTTAATGAGTGTAACCGATTATTCTCGTATCGTTGGAGCCCATGATCTGTAGGCCCATTAGGTCTCTCTACTAGCTCAACAGAAATAAAACTTGGAACAATATGATAGTTTAATATTAGTAACGTTCAAATTCGGAATATGATGCAAAAGTCGGTTATATGCGATATTTAACGACGTATTGGTTTAATTTTGAATTAAACTAAAAATGAGAGTTGGTTGAATTTAAATATGATTTAAATATTAAACACGTGAATAGGGATTCACGTTCGAGAAATATCATTTGGAGAAAAGCCGGGATTGAGCAAAATAATATAGGTTAAAAATCATTTATGGTCCCTAAACTTTCATAAAAGTAACAATTTAGTACCTGAACTTTCATTTGTAACGATTTAGTCCCTGTACTTTCAATTTTGTAACAATTTAGTCCCTGAACTTTAATAAGTAACAATTCAGTCCCTATACTTTCAAATTTGTATCAATTTAGTCCCTATTCTTTCAAATTTGTAACAATTTAATCATTGTCCATCAAAATTAAATGTCGATTTTTATTATTTAGTGATTAAACTTTGTAGCTTATAAACATATTGGGTCCCAAATTAGTTAATTAATCTATCTATGTATGGAATTTCATTAAATCTTTACATTAATTTTTCACAATAGGGATCAAATTGTTACAAATTTGAAAGTACAGGGACTAAATTGTTACTGATTAAAGTTTAGGGACTAAATTGTTATAAAATTGAAAGTACAAGGACTAAATCGTTACAAAATTAAAAGTAGAAGGACTAAATCGTTACAAATGAAAGTTCAGAGACTAAATTGTTACTTTTACGAGTGTTGAATGACTAAAAGTGAATTTAAACCTTAAATTAATTAATTTTATTAATATTTTAATTAAAGAAGATTTTAATTAAAATGAAAAATAAAACTACCAAAGTGGCATTTTAAAATTAGAATATTTAAAAACCAAAAAATAGAATTTTTGAATTTAAGAAATTAAAAAACTCTTAATTTTTGAATTTAAGAAATTAAAAAACTCTTAATTTTTGGAGGTGGTGGGTTTTGACTAAGCTATGAGCTTAAGTCCTTATTAGGACACCTAATTAACCACATAATTGATCTCTAATTTGGTTTCACTCTTGGCTGAATCCATTCGACATGTTTTCCTCTATACATACATGCTTGAAAGGTGAAGAAATGCTGATGAAATTATACCAAACTCTCACAACTCTCAAACCCATTGTTGAAGCTTGAACTTCAAGCTTTCCCTTCCAATTCCTATCAATTAAGGATCCCACAATTGGTTCCAAGGCCTAAGGATAGTAGAGAAGATCCAAGTGGTTGTCCAAGATCCATTGGTGTGAAGATATAAGCCTCGGATTACACGAATTGGGAGCTACAAGAGGTAAGTACTGAAATGCTCTGTTTTTCTCAATATGAGCAACATGTCTTCTTGAATCAAATTGATGAAATTGTGTGCCTAAGATCCTAAATTGGTTTTGCATGTTTAATATTAACACCTTCAATACGACCCACTTTGTATTTTCAGAAATGGAATTGAAGTAGACAAGGCGAATATAGAGATCATATCAAAGCTTCCTCCACCGAAGATAGTTCAAGATGTTCGAAGTTTTCTAGGCCATGCAGGTTTTTTAGAAGATTTATAAAATACTTTTCTAAAAAATTCAAACCTTTGTGCAGGTTGCTCAAGGTTGATAGACAATTCAAGTTTGATGATGAATGTTTACAGAAGAAAGATAAGATTGTTCAGCTGATTTATTATGCAAGCAAGACACTTAATGAAGCTCAGATGAACTACATGGTGACTGAAAAAAAACTACTAGCAGTAGCCTATGCTTTTGACAAGTTTAGATCTTACCAAATAGGGACAAAGTTGTGGTTCATACAGACCATTCAACTCTCAAGCATTTGCTATCAAAGAAAGATGTCAAACTTCGTATAATCTGGTGGATATTACTTTTGCAAGAGTTTTACATTGAAATCCGGGATCGGAAAGGGACAGAGAACCAAGTTGCAGATCATTTATCCAGACTTGGGGAAGAGGCATAGGTTGAAGAGAGGCTGCAGATTCGAGAAGCGTTTGCTGATGAGCAATTATTGGCTGTTCGAGCAATCATGATCCCATGGTTTGTAGACTATGTAAATTACTTAGACAGTGGACTCAAACCTTCAGAAGCCATAGCTCAACAAATGAAGAAGTTTATACGTGATGTGAAGGATTATTATTGGAACGAACCATACTTGTACAAACATGGACCATATCCGATACTCAGAAGATGTGTGATGGAAGAAGAAGTGTCACACATTTTAGAAGCATGCCACTCAGATCTATATGGAGGGCACTTTGCAAGTTTAAAAACTGTTGTCAAAGTCCTACAAATAGACTATGTATCAAAATGGATCGATGTTGTAGCAACATCATCCAATGATGCCAAAGTTGTGAAAAAAGTTTTTCATGAAGAATATTTTTACAAGATTTGGAACCCCCGGATTCGTTATAAGTGACGAAGGTATGCACTTTCTCAATAAGATGATATCTAACATGTTTTCTAAGTACAATATCAGGCACATGGTGGCAATTGCTTACCATCCCCAGACGAATGGTTCCAGCAGAGCTCTTTAATAGGGAAATCAAAGCTATCCTGGAGAAAACAGTGGACCCTTCTCAAAAGGATTGGTCACTTCGTCTTGATGAAGCTTTATGGGCACATAGAACCACATACAAAGCACCTTTAAACTTTAAACTTGGGGTGTTTCTTCTTCTTTCAAGAGTTTGA

mRNA sequence

ATGGAATCAGAGTATGTTGCTGCATGTGAGGCAACAAAGGAAGCAGTATGGCTACGGAAGTTCCTGATAGGTTTGGAAGTTGTTCCAAACATGAACCTCCCCATAACTTTATACTGTGATAAAAATGGGGCAGTAGCCAATTCCAAAGAGCCTCGCAACCACAAACGAGGCAAACACATCGAGAGGAAATATAACCTGATTCGGGAGATAGTGCAACACGGAGAAGTGATTGTCACAAAGATCGCTTCAGAGCACAACATAGTTGATCCATTTCCGAAAACTCTCTCGGCTAAAGTGTTTGAGGGTCATCTACAAAGCTTAGGTCTACGAGATATGTATAACCTAGGGCAAGTGGGAGATATACAGGTGCATAGACTAATTCATGGGCACGGGTCCCAAGAGCAGTTCACTAACTTTGTTGCTCTGCATGACAGGTTGCTCAAGGTTGATAGACAATTCAAGTTTGATGATGAATGTTTACAGAAGAAAGATAAGATTGTTCAGCTGATTTATTATGCAAGCAAGACACTTAATGAAGCTCAGATGAACTACATGGTTGAAGAGAGGCTGCAGATTCGAGAAGCGTTTGCTGATGAGCAATTATTGGCTGTTCGAGCAATCATGATCCCATGGTTTGTAGACTATGTAAATTACTTAGACAGTGGACTCAAACCTTCAGAAGCCATAGCTCAACAAATGAAGAAGTTTATACGTGATGTGAAGGATTATTATTGGAACGAACCATACTTGTACAAACATGGACCATATCCGATACTCAGAAGATGTGTGATGGAAGAAGAAGTGTCACACATTTTAGAAGCATGCCACTCAGATCTATATGGAGGGCACTTTGCAAGCACATGGTGGCAATTGCTTACCATCCCCAGACGAATGGTTCCAGCAGAGCTCTTTAATAGGGAAATCAAAGCTATCCTGGAGAAAACAGTGGACCCTTCTCAAAAGGATTGGTCACTTCGTCTTGATGAAGCTTTATGGGCACATAGAACCACATACAAAGCACCTTTAAACTTTAAACTTGGGGTGTTTCTTCTTCTTTCAAGAGTTTGA

Coding sequence (CDS)

ATGGAATCAGAGTATGTTGCTGCATGTGAGGCAACAAAGGAAGCAGTATGGCTACGGAAGTTCCTGATAGGTTTGGAAGTTGTTCCAAACATGAACCTCCCCATAACTTTATACTGTGATAAAAATGGGGCAGTAGCCAATTCCAAAGAGCCTCGCAACCACAAACGAGGCAAACACATCGAGAGGAAATATAACCTGATTCGGGAGATAGTGCAACACGGAGAAGTGATTGTCACAAAGATCGCTTCAGAGCACAACATAGTTGATCCATTTCCGAAAACTCTCTCGGCTAAAGTGTTTGAGGGTCATCTACAAAGCTTAGGTCTACGAGATATGTATAACCTAGGGCAAGTGGGAGATATACAGGTGCATAGACTAATTCATGGGCACGGGTCCCAAGAGCAGTTCACTAACTTTGTTGCTCTGCATGACAGGTTGCTCAAGGTTGATAGACAATTCAAGTTTGATGATGAATGTTTACAGAAGAAAGATAAGATTGTTCAGCTGATTTATTATGCAAGCAAGACACTTAATGAAGCTCAGATGAACTACATGGTTGAAGAGAGGCTGCAGATTCGAGAAGCGTTTGCTGATGAGCAATTATTGGCTGTTCGAGCAATCATGATCCCATGGTTTGTAGACTATGTAAATTACTTAGACAGTGGACTCAAACCTTCAGAAGCCATAGCTCAACAAATGAAGAAGTTTATACGTGATGTGAAGGATTATTATTGGAACGAACCATACTTGTACAAACATGGACCATATCCGATACTCAGAAGATGTGTGATGGAAGAAGAAGTGTCACACATTTTAGAAGCATGCCACTCAGATCTATATGGAGGGCACTTTGCAAGCACATGGTGGCAATTGCTTACCATCCCCAGACGAATGGTTCCAGCAGAGCTCTTTAATAGGGAAATCAAAGCTATCCTGGAGAAAACAGTGGACCCTTCTCAAAAGGATTGGTCACTTCGTCTTGATGAAGCTTTATGGGCACATAGAACCACATACAAAGCACCTTTAAACTTTAAACTTGGGGTGTTTCTTCTTCTTTCAAGAGTTTGA

Protein sequence

MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMYNLGQVGDIQVHRLIHGHGSQEQFTNFVALHDRLLKVDRQFKFDDECLQKKDKIVQLIYYASKTLNEAQMNYMVEERLQIREAFADEQLLAVRAIMIPWFVDYVNYLDSGLKPSEAIAQQMKKFIRDVKDYYWNEPYLYKHGPYPILRRCVMEEEVSHILEACHSDLYGGHFASTWWQLLTIPRRMVPAELFNREIKAILEKTVDPSQKDWSLRLDEALWAHRTTYKAPLNFKLGVFLLLSRV
Homology
[Close]
BLAST of Lag0011519 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 8.7e-49
Identity = 99/113 (87.61%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 1   MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHI 60
           ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHI
Sbjct: 186 MEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHI 245

Query: 61  ERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMY 114
           ERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVFEGHL+SLGLRDMY
Sbjct: 246 ERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMY 298

[Close]
BLAST of Lag0011519 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 8.7e-49
Identity = 99/113 (87.61%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 1    MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHI 60
            ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHI
Sbjct: 1121 MEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHI 1180

Query: 61   ERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMY 114
            ERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVFEGHL+SLGLRDMY
Sbjct: 1181 ERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMY 1233

[Close]
BLAST of Lag0011519 vs. NCBI nr
Match: KAA0059226.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 205.3 bits (521), Expect = 8.7e-49
Identity = 99/113 (87.61%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 1    MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHI 60
            ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHI
Sbjct: 995  MEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHI 1054

Query: 61   ERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMY 114
            ERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVFEGHL+SLGLRDMY
Sbjct: 1055 ERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMY 1107

[Close]
BLAST of Lag0011519 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 1.9e-48
Identity = 98/113 (86.73%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 1    MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHI 60
            ME+EYVAACEA KEAVWL+KFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHI
Sbjct: 1121 MEAEYVAACEAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHI 1180

Query: 61   ERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMY 114
            ERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVFEGHL+SLGLRDMY
Sbjct: 1181 ERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMY 1233

[Close]
BLAST of Lag0011519 vs. NCBI nr
Match: KAA0037260.1 (retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa] >TYK07524.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 203.4 bits (516), Expect = 3.3e-48
Identity = 99/113 (87.61%), Postives = 104/113 (92.04%), Query Frame = 0 

Query: 1   MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHI 60
           ME+EYVAACEATKEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEP NHKRGKHI
Sbjct: 78  MEAEYVAACEATKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPCNHKRGKHI 137

Query: 61  ERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMY 114
           ERKY LIREIVQ G+VIVTKIASEHNI DPF KTL+AKV EGHL+SLGLRDMY
Sbjct: 138 ERKYRLIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVLEGHLESLGLRDMY 190

[Close]
BLAST of Lag0011519 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 74.3 bits (181), Expect = 3.0e-12
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 0 

Query: 2    ESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHIE 61
            E+EY+A  EA +EA+WL+  L  + +   +  PI +Y D  G ++ +  P  HKR KHI+
Sbjct: 1295 EAEYMALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHID 1354

Query: 62   RKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGL 110
             KY+  RE VQ+  + +  I +E+ + D F K L A  F      LGL
Sbjct: 1355 IKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]
BLAST of Lag0011519 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.9e-10
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = 0 

Query: 2    ESEYVAACEATKEAVWLRKFL--IGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKH 61
            E+EY+AA E  KE +WL++FL  +GL           +YCD   A+  SK    H R KH
Sbjct: 1221 EAEYIAATETGKEMIWLKRFLQELGLH-----QKEYVVYCDSQSAIDLSKNSMYHARTKH 1280

Query: 62   IERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFE 102
            I+ +Y+ IRE+V    + V KI++  N  D   K +    FE
Sbjct: 1281 IDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317

[Close]
BLAST of Lag0011519 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-49
Identity = 99/113 (87.61%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 1    MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHI 60
            ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHI
Sbjct: 1121 MEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHI 1180

Query: 61   ERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMY 114
            ERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVFEGHL+SLGLRDMY
Sbjct: 1181 ERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMY 1233

[Close]
BLAST of Lag0011519 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-49
Identity = 99/113 (87.61%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 1    MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHI 60
            ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHI
Sbjct: 995  MEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHI 1054

Query: 61   ERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMY 114
            ERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVFEGHL+SLGLRDMY
Sbjct: 1055 ERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMY 1107

[Close]
BLAST of Lag0011519 vs. ExPASy TrEMBL
Match: A0A5A7TKM4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G00470 PE=4 SV=1)

HSP 1 Score: 205.3 bits (521), Expect = 4.2e-49
Identity = 99/113 (87.61%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 1   MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHI 60
           ME+EYVAACEA KEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHI
Sbjct: 186 MEAEYVAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHI 245

Query: 61  ERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMY 114
           ERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVFEGHL+SLGLRDMY
Sbjct: 246 ERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMY 298

[Close]
BLAST of Lag0011519 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.4e-49
Identity = 98/113 (86.73%), Postives = 106/113 (93.81%), Query Frame = 0 

Query: 1    MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHI 60
            ME+EYVAACEA KEAVWL+KFL  LEVVPNMNLPITLYCD +GAVANSKEPR+HKRGKHI
Sbjct: 1121 MEAEYVAACEAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHI 1180

Query: 61   ERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMY 114
            ERKY+LIREIVQ G+VIVTKIASEHNI DPF KTL+AKVFEGHL+SLGLRDMY
Sbjct: 1181 ERKYHLIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGHLESLGLRDMY 1233

[Close]
BLAST of Lag0011519 vs. ExPASy TrEMBL
Match: A0A5D3C8F4 (Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold702G00100 PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.6e-48
Identity = 99/113 (87.61%), Postives = 104/113 (92.04%), Query Frame = 0 

Query: 1   MESEYVAACEATKEAVWLRKFLIGLEVVPNMNLPITLYCDKNGAVANSKEPRNHKRGKHI 60
           ME+EYVAACEATKEAVWLRKFL  LEVVPNMNLPITLYCD +GAVANSKEP NHKRGKHI
Sbjct: 78  MEAEYVAACEATKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPCNHKRGKHI 137

Query: 61  ERKYNLIREIVQHGEVIVTKIASEHNIVDPFPKTLSAKVFEGHLQSLGLRDMY 114
           ERKY LIREIVQ G+VIVTKIASEHNI DPF KTL+AKV EGHL+SLGLRDMY
Sbjct: 138 ERKYRLIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVLEGHLESLGLRDMY 190

The following BLAST results are available for this feature:
BLAST of Lag0011519 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0042496.18.7e-4987.61gag/pol protein [Cucumis melo var. makuwa][more]
KAA0025945.18.7e-4987.61gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi... [more]
KAA0059226.18.7e-4987.61gag/pol protein [Cucumis melo var. makuwa][more]
KAA0035907.11.9e-4886.73gag/pol protein [Cucumis melo var. makuwa][more]
KAA0037260.13.3e-4887.61retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. m... [more]
BLAST of Lag0011519 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P041463.0e-1237.04Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P109784.9e-1037.25Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
BLAST of Lag0011519 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TZD04.2e-4987.61Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000... [more]
A0A5A7UYE84.2e-4987.61Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015... [more]
A0A5A7TKM44.2e-4987.61Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold246G0047... [more]
A0A5A7T2V99.4e-4986.73Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760... [more]
A0A5D3C8F41.6e-4887.61Retrovirus-related pol polyprotein from transposon tnt 1-94 OS=Cucumis melo var.... [more]
BLAST of Lag0011519 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 301..339
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 183..285
NoneNo IPR availablePANTHERPTHR24559:SF373REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATEDcoord: 183..285
NoneNo IPR availablePANTHERPTHR24559:SF373REVERSE TRANSCRIPTASE DOMAIN, RIBONUCLEASE H-LIKE DOMAIN PROTEIN-RELATEDcoord: 301..339
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 1..98
e-value: 3.78806E-34
score: 121.036

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011519.1Lag0011519.1mRNA