Lag0011492 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011492
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrotransposon gag protein
Locationchr1: 26183173 .. 26188158 (-)
RNA-Seq ExpressionLag0011492
SyntenyLag0011492
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTATGGCTGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTTTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGGTAAGCCAAATCTCATTATCTTGACCAATCCTGCAAATGAAGGATCTGATCAAGACCATGACAAAGATAAGAGCTTTTAAATGTAAAAGCTCCTTATCACAAGAGCCTAAACTGCATGATGCTCCTAGCCCACACGAGCTTAAAAGGTGAGAGCAAAAATTTTGAACTACGTTATGACTTGATCCCTTTTCTTCAAATGGTACGTAGGCAGCTTAAAAAAAAACTTTAAGTTCAGTCTCTGCAAACAAAAAAAAAAAAGTGCGACAAATATTGAAGCACAACAATTGAGGAAGTTCATCACTAGTGGGGGCAACACAGCAAATAGAGGTTATGCACCATTATGGATATGAAGCTATGAGTTGGATGAATAAAAGAAAACTTCATTCCTCCAAGTTCAGTGTCTTGCTAGCCTCAAGTTCGGTGTTTCACTCACCCTATGTTCGTTGTTCTCTCTTCTTCAAGTTTGAAGATTCTTACGCACTTCGCTGGAGTTCATTCTCTTCAAGTTCGAAGGTTCTCATGCTCTTCGCAACAGTTCATTCTCTCCAAATTCGAGGGTGCTTACGTTGTACACTACTGGGTTGTTCCTTCTCCAAGTTTGAGGTTCTCCGATGCACGCTCCTGCGTTGCTTCGCTGGAGTTTATTTTCTTTTTTCAAGTTCGAAGATTTTCACGCTGTGTGGTTTCACTTTGTCCTTCTTTAAGTTCGAAGGTTCTCAAGTGTTACACTTTCTTCTTTAAGTTCGAAGGTTCCCACGTTGCGTTGTTGTGTTGCTTCCTTCTCCAAGTTCAAAGGTTCTAACGTTGCGGTGCTTCTTCATCAAGTTCGAAGTTCCTTATCTCCAATTCGAAGGATCTCGCACATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTCCCTTCTCTCAAGTTTGAAGGTTTTCACGCTGCTTCGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCAAAGGGTTCTCATGCAACGCCTTCCTCCAAGTTCGAAGGATCTCACGCATTTCGTTGCAGTTCCTTCTCTCAGAGTTCAAAGTTCATTCTCTTCAAGTTCGAAGGTTCTCACGTTGCTTTGTTGCAGTTTCCTTCCTCCAAGTCCGAAGGCTCCCCCAAGTCGAGTCGAAGACTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTCCGAAGGCTCCCCAAGTCGAGTCGAAGGCTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCATCGCTGCAGTCCATTCTCTCAAGTTTGAAAGTTCTCACACTGCTTCGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCAGGTCCTTACATTGTATGCTAGTGCGGTGTTCAACCTAAAAGACAGTTTGAGTCTTAAAAACTCATGACCTTAAAATATCTAGCTTGGCTATTAAACTAATAGACCATTCAAGTATTTTAATTAACATTCGCTTGTTGATATTATACATATATGCTATTCAGTCAACTCATATTATTTTCAATCCAAATCATGTCAAAAATCAATTAAAGTCCAAACTCATTCTATTCCAAATGCAAGTTAAAATTGGATAGAATTTTACCTCAAGTCAAAAGTTAGGGACCTCGCTTCTTTTTCAAAAGTGACGGTTGGCGACTTTCACTTCATCTTCAAAAGTTGACGGTTGACAACTTCACTTCAAAGTTGGCGGTTGGCGACTTTCACTTCATCTTCAAAAATTGACTGTTGATAACTTCACTTCATATTCAAAAGTTGACGGTTGAAGTCTTCGCTACATCTGCAAAGATGAACAACTTTAGTGTTGCCTTTATCTTGAAAGTGTCCAGACTGGAAGATGCATCTTAGCTGCAAGTTAAAAAAATGCTTGATATCAAACCACAAAAAAAAAAAGAAAGAAAGACAATAAAAGTGTTGTTAAAAAACGGTGACCACCCCTGCAGGAAACTATCGTCATCAAAGTGACTGGTCTAGACAAGTGGTGAAGTCACTGCGATTGAATCTGATGACGACCGTTGTAGGCGAGTCGGGTCTGGTGACCACCCCTGCAGGTTACTCATATCACCCAATAAAATGGGGACGGGTCTAGCAGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGAACTGGTCTAGCAGGAGTGTCTCACTGTAGGCAAATCTGGTGATTACCCCTGCAGGTTACTCAGATCACCCAGTAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCAAATCTGGTGACTACCCCTGCAGGTTACTTAGATCACCTAGTAAAATGGGACTGGTCTAGCAGGAATGCATCACTGAAGGCGAATCTGGTGACTACCCCGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCGGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGAAATCACTGCAAGCGAATTTGGTGACGACTGTTGCACGAAGCTTACACATTAAAGGAAGAAAGAAACAAATTGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACGAAATTTAAAAAAATATAAATAAATAAACGAAAAGTAAAAAAAAAACGAAAACTAAAAAAAAAAAAAAAAAAGAAAAAAAGAAAAGAAAGTTTCCTACTTGGATCCCTTCTTGAATGCTCTCTGCGATGTGTGCTCTCCCCTACTGAGGTTCAGTCTTATTTATAGGGGAGTTTTAAGTTCAAATTAAAAGTTTAGATAAAGATTTGACTCAAATGAAATCTATCTCCTGTTCAAAATTTTATGGATAATCTTTATCTTTATCTGAACCAACTTAATTAAATTGAAATTCTTAACAGATAAGTATTTCAATTCAAATCAATTTGGGAATTCAAATTTTATCTAAATAATTTTATTTGGGCATACTCCAAATTTTTCTTCCAAATCAAAATTTGAGATTCAAACATACAATTCTATTCCAAATGCAAGTTTGAATTTGGTAAAATTTTACCTCAAATTAAATTTTGGTCATAATTCAAATTCTATCCCAAATGGACCAGAGTCCAAACCTCAAGTTCTATTCCATTGCAAGTTAAAATTGGGTAGGATTTTACCTCAAATCAAAATTTGGGTATAAACCAAATTTTCCCAAACTTGAAATCAAAGTTTCCTGCCAAACAAGGAAAATCAAAATTTTGACCAAACCTCAAATTTTGATTAATTGGCAATAAAAGTGTGTCAAATAAAAAAATCAAAATTTTGACCAAAATTCATATTTTGATTAAATTGACGCACTAAATGGAGTCAAAGTCAAGAACAAATACCTTGCATTTTAATTCCAAAATATATTTTTCGAGATTCACTCACACATAACTTGTGCCTAAATCTCGAAAAGGGGGCATTTGTTGAAGGAGAAATTTTGGCCAATCACAAATTGCCACGTCATTAATATAAATTAATGATAAAATAAATTTGGGACCATTACACATTTACACGTGTGCCTAAATTAAATTAATAGACATTAAAATTCGACAAATCAAAGAATGCCACTTGTCTATTAGTGATCCATCCGATAACATCAGCCAGTTCAATCAATTATGCCACGTGGCAATTGAACCCAAGCCCAAGCCCATATGAGGTCCATCAAACTCTATAAATAGAGGAGGCCACCATTCATTTGGGGGATTCAGCCAGAGGCAGAGAGGGCAGAGTCCAGAGCATTCTCCCAAGATCCATAGTCGTCAGAATCCAAAGAGTCCAGAGAATTCAGAGATCCGAGATTCAAAATTCAAAGGATTAATACTCAGAAGATTGGAAGACTAGAAGACTCTAAAAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGACCGATCATCCAAGAGGATCAACAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAATAAGTCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACCGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAATAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAACAGATCATCAAGTCAGCAGCCGATCATCCAAAGATCAACAAGCAACGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGTAG

mRNA sequence

ATGAGTATGGCTGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTTTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGATTCTTACGCACTTCGCTGGAGTTCATTCTCTTCAAGTTCGAAGGTTCTCATGCTCTTCGCAACAGTTCATTCTCTCCAAATTCGAGGGTGCTTACGTTGTACACTACTGGGTTGTTCCTTCTCCAAGTTTGAGGTTCTCAAGTGTTACACTTTCTTCTTTAAGTTCGAAGGTTCCCACGTTGCGTTGTTGTGTTGCTTCCTTCTCCAAGTTCAAAGGTTCTAACGTTGCGGTGCTTCTTCATCAAGTTCGAAGTTCCTTATCTCCAATTCGAAGGATCTCGCACATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTCCCTTCTCTCAAGTTTGAAGGTTTTCACGCTGCTTCGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCAAAGGGTTCTCATGCAACGCCTTCCTCCAAGTTCGAAGGATCTCACGCATTTCGTTGCAGTTCCTTCTCTCAGAGTTCAAAGTTCATTCTCTTCAAGTTCGAAGGTTCTCACGTTGCTTTGTTGCAGTTTCCTTCCTCCAAGTCCGAAGGCTCCCCCAAGTCGAGTCGAAGACTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTCCGAAGGCTCCCCAAGTCGAGTCGAAGGCTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCATCGCTGCAGTCCATTCTCTCAAGTTTGAAAGTTCTCACACTGCTTCGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCAGGAAACTATCGTCATCAAAGTGACTGGTCTAGACAAGTGGTGAAGTCACTGCGATTGAATCTGATGACGACCGTTGTAGGCGAGTCGGGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGAACTGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCAAATCTGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAATAAGTCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACCGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAATAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAACAGATCATCAAGTCAGCAGCCGATCATCCAAAGATCAACAAGCAACGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGTAG

Coding sequence (CDS)

ATGAGTATGGCTGCGACAGAGGAAGAAAATCAATGTTCGATGTCCACCTCCACTCGACCTTCAGCTTTCCAAAGGCTAAGTGTCTCCACATCGAAGAAAAGTCGATCTTCAACATCTTTCTTTGATCGCCTCAAAGTAACAAACGATCAACCTAAAAGAAAGATGAACAACTTGGAGTTGAAACTTTTCGATGAAGTAAACAGTGACAAGAAGCTTCATAGTAGCATCCTGTCACGTATGAAGAGGAAGTTTTCTGTTCTCATAAATACGGAAGGTTCCTTGAAGATTCTTACGCACTTCGCTGGAGTTCATTCTCTTCAAGTTCGAAGGTTCTCATGCTCTTCGCAACAGTTCATTCTCTCCAAATTCGAGGGTGCTTACGTTGTACACTACTGGGTTGTTCCTTCTCCAAGTTTGAGGTTCTCAAGTGTTACACTTTCTTCTTTAAGTTCGAAGGTTCCCACGTTGCGTTGTTGTGTTGCTTCCTTCTCCAAGTTCAAAGGTTCTAACGTTGCGGTGCTTCTTCATCAAGTTCGAAGTTCCTTATCTCCAATTCGAAGGATCTCGCACATTTCGCTGCAGTTCCTTCTCTCCAAGTTTGAAGGTTCACGCACTTCGCTGCAGTCCCTTCTCTCAAGTTTGAAGGTTTTCACGCTGCTTCGCTGCAGTTCCTTCTCCAAGTTCGAAGGTTCTCACGTTGCTTCGCTGCAGTTCTTTCCTCCAAGTTCAAAGGGTTCTCATGCAACGCCTTCCTCCAAGTTCGAAGGATCTCACGCATTTCGTTGCAGTTCCTTCTCTCAGAGTTCAAAGTTCATTCTCTTCAAGTTCGAAGGTTCTCACGTTGCTTTGTTGCAGTTTCCTTCCTCCAAGTCCGAAGGCTCCCCCAAGTCGAGTCGAAGACTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTCCGAAGGCTCCCCAAGTCGAGTCGAAGGCTCACACGTTGCTTCGCTGTAGTTTCCTTCCTCCAAGTTCGAAGGTTCTCACGTTGCATCGCTGCAGTCCATTCTCTCAAGTTTGAAAGTTCTCACACTGCTTCGAAGGTTCTCACGCGCTTCGCTACAGTTCCTTCAGGAAACTATCGTCATCAAAGTGACTGGTCTAGACAAGTGGTGAAGTCACTGCGATTGAATCTGATGACGACCGTTGTAGGCGAGTCGGGTCTGGTGACCACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGAACTGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGGTTACTCAGATCACCCAATAAAATGGGGACTGGTCTAGCAGGAGTGCATCACTGTAGGCAAATCTGGAGTGCATCACTGAAGGCGAATCTGGTGACTACCCCTGCAGATCATCAAGCCAACAGGCTGATCCAAGAGATCAATAAGTCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAGATCAACAAGCCAACCGACCGATCAAGAAGATCAACAAGTCAGCAGGCCGATCATCCAAGAAGATCAACAAGCCAACCGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGCAGGCCGATCATCCAAGAGGATCAATAAGCTAACAAGCCGATCCAACAGATCATCAAGCCAACAGGCCGATCCAACAGATCATCAAGTCAGCAGCCGATCATCCAAAGATCAACAAGCAACGATCGAACAGATCATCAAGCCAACAGGCCGATCCAAGAGATCATCAAGTCAGTAG

Protein sequence

MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHFAGVHSLQVRRFSCSSQQFILSKFEGAYVVHYWVVPSPSLRFSSVTLSSLSSKVPTLRCCVASFSKFKGSNVAVLLHQVRSSLSPIRRISHISLQFLLSKFEGSRTSLQSLLSSLKVFTLLRCSSFSKFEGSHVASLQFFPPSSKGSHATPSSKFEGSHAFRCSSFSQSSKFILFKFEGSHVALLQFPSSKSEGSPKSSRRLTRCFAVVSFLQVRRLPKSSRRLTRCFAVVSFLQVRRFSRCIAAVHSLKFESSHTASKVLTRFATVPSGNYRHQSDWSRQVVKSLRLNLMTTVVGESGLVTTPAGYSDHPIKWELECITEGESGDYPCRLLRSPNKMGTGLAGVHHCRQIWSASLKANLVTTPADHQANRLIQEINKSTDRSRRSTSQQADHPRDQQANRPIKKINKSAGRSSKKINKPTDRTDHQANRPIQEIIKSAGRSSKRINKLTSRSNRSSSQQADPTDHQVSSRSSKDQQATIEQIIKPTGRSKRSSSQ
Homology
[Close]
BLAST of Lag0011492 vs. NCBI nr
Match: KAA0036008.1 (Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 110.5 bits (275), Expect = 4.9e-20
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 0 

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF 101
           K F E N D K+HS + SRMKRK SV INTEGSL +   F
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 191

[Close]
BLAST of Lag0011492 vs. NCBI nr
Match: KAA0044978.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 8.4e-20
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 0 

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF 101
           K F E N D K+HS + SRMKRK SV INTEGSL +   F
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 250

[Close]
BLAST of Lag0011492 vs. NCBI nr
Match: KAA0050734.1 (gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 109.8 bits (273), Expect = 8.4e-20
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 0 

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF 101
           K F E N D K+HS + SRMKRK SV INTEGSL +   F
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 191

[Close]
BLAST of Lag0011492 vs. NCBI nr
Match: KAA0057874.1 (gag protease polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-19
Identity = 62/98 (63.27%), Postives = 72/98 (73.47%), Query Frame = 0 

Query: 3   MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKL 62
           MA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K 
Sbjct: 1   MATKEEENQCPTSTCTRTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKTLKEKP 60

Query: 63  FDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF 101
           F E N D K+H+ + SRMKRK SV INTEGSL +   F
Sbjct: 61  FHEENDDDKIHTRVSSRMKRKLSVDINTEGSLTVKPRF 98

[Close]
BLAST of Lag0011492 vs. NCBI nr
Match: TYK16519.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.4e-19
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 0 

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TN+Q KR+M + + 
Sbjct: 422 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNNQQKREMKSFKA 481

Query: 61  KLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF 101
           K F E N D K+HS + SRMKRK SV INTEGSL +   F
Sbjct: 482 KPFHEQNDDNKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 521

[Close]
BLAST of Lag0011492 vs. ExPASy TrEMBL
Match: A0A5A7SZJ7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18735G00010 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 2.4e-20
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 0 

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC MST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M + + 
Sbjct: 92  LSMATKEEENQCPMSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSFKA 151

Query: 61  KLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF 101
           K F E N D K+HS + SRMKRK SV INTEGSL +   F
Sbjct: 152 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 191

[Close]
BLAST of Lag0011492 vs. ExPASy TrEMBL
Match: A0A5D3BBF9 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00250 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.1e-20
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 0 

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 92  LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 151

Query: 61  KLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF 101
           K F E N D K+HS + SRMKRK SV INTEGSL +   F
Sbjct: 152 KPFHEENGDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 191

[Close]
BLAST of Lag0011492 vs. ExPASy TrEMBL
Match: A0A5A7TQ06 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002860 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 4.1e-20
Identity = 63/100 (63.00%), Postives = 74/100 (74.00%), Query Frame = 0 

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M +L+ 
Sbjct: 151 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKSLKA 210

Query: 61  KLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF 101
           K F E N D K+HS + SRMKRK SV INTEGSL +   F
Sbjct: 211 KPFHEENDDDKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 250

[Close]
BLAST of Lag0011492 vs. ExPASy TrEMBL
Match: A0A5D3D209 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003310 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-19
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 0 

Query: 1   MSMAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLEL 60
           +SMA  EEENQC  ST  R SAF+RLS+STSKK R STS FDRLK+TN+Q KR+M + + 
Sbjct: 422 LSMATKEEENQCPTSTYARTSAFKRLSISTSKKHRPSTSAFDRLKMTNNQQKREMKSFKA 481

Query: 61  KLFDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF 101
           K F E N D K+HS + SRMKRK SV INTEGSL +   F
Sbjct: 482 KPFHEQNDDNKIHSRVPSRMKRKLSVDINTEGSLTVKPRF 521

[Close]
BLAST of Lag0011492 vs. ExPASy TrEMBL
Match: A0A5A7URU7 (Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G001720 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-19
Identity = 62/98 (63.27%), Postives = 72/98 (73.47%), Query Frame = 0 

Query: 3   MAATEEENQCSMSTSTRPSAFQRLSVSTSKKSRSSTSFFDRLKVTNDQPKRKMNNLELKL 62
           MA  EEENQC  ST TR SAF+RLS+STSKK R STS FDRLK+TNDQ +R+M  L+ K 
Sbjct: 1   MATKEEENQCPTSTCTRTSAFKRLSISTSKKHRPSTSAFDRLKMTNDQQQREMKTLKEKP 60

Query: 63  FDEVNSDKKLHSSILSRMKRKFSVLINTEGSLKILTHF 101
           F E N D K+H+ + SRMKRK SV INTEGSL +   F
Sbjct: 61  FHEENDDDKIHTRVSSRMKRKLSVDINTEGSLTVKPRF 98

The following BLAST results are available for this feature:
BLAST of Lag0011492 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0036008.14.9e-2063.00Retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0044978.18.4e-2063.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0050734.18.4e-2063.00gag protease polyprotein [Cucumis melo var. makuwa] >TYJ95698.1 gag protease pol... [more]
KAA0057874.12.4e-1963.27gag protease polyprotein [Cucumis melo var. makuwa][more]
TYK16519.12.4e-1962.00retrotransposon gag protein [Cucumis melo var. makuwa][more]
BLAST of Lag0011492 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0011492 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7SZJ72.4e-2063.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3BBF94.1e-2063.00Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol... [more]
A0A5A7TQ064.1e-2063.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5D3D2091.2e-1962.00Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7URU71.2e-1963.27Gag protease polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffol... [more]
BLAST of Lag0011492 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 476..501
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 474..595
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 542..595
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 514..529

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011492.1Lag0011492.1mRNA