Lag0011491 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011491
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionLOW QUALITY PROTEIN: uncharacterized protein LOC111022007
Locationchr1: 26172660 .. 26173133 (-)
RNA-Seq ExpressionLag0011491
SyntenyLag0011491
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGAAAAGAGATTGTCTGATGGAACGCGATTTCGAGGGCGGTGATGAACTACCCCACTTTTTGAGGACCAACATTATTAATCATGGCTGGGAACAACTATGTACAAAACCCAAACCTGTCGAGGCTCAATTGGTGAAGGATCTCTACGCAAATATTGACAAGAATGAGGGCTTTCTAGTCATAGTTCACGGCATTGCAGTGGATTGGAGTCTTGGAGCAATCAATTCCTTGTTCAACCTTCAAGACTTTCCCCATGCGGTGTTCAACGAAATGGTAGTTGCTCATTCCAATGAGCAACTTAATGTTGTTGTGCGTGAGGTGGGAGTTGAAGGGGCCCAATGGAGGTTATCAAGGACTGGAGCGAGGACTTTCCAATCAATCTACCTGAAGAGTGAAGCCAATACTTGGCTTGGTTTTGTGAAGCAAATGCTGCTACCAATGACCCACGATTCGATTGTGTCTCAAGACTGA

mRNA sequence

ATGTTGAAAAGAGATTGTCTGATGGAACGCGATTTCGAGGGCGGTGATGAACTACCCCACTTTTTGAGGACCAACATTATTAATCATGGCTGGGAACAACTATGTACAAAACCCAAACCTGTCGAGGCTCAATTGGTGAAGGATCTCTACGCAAATATTGACAAGAATGAGGGCTTTCTAGTCATAGTTCACGGCATTGCAGTGGATTGGAGTCTTGGAGCAATCAATTCCTTGTTCAACCTTCAAGACTTTCCCCATGCGGTGTTCAACGAAATGGTAGTTGCTCATTCCAATGAGCAACTTAATGTTGTTGTGCGTGAGGTGGGAGTTGAAGGGGCCCAATGGAGGTTATCAAGGACTGGAGCGAGGACTTTCCAATCAATCTACCTGAAGAGTGAAGCCAATACTTGGCTTGGTTTTGTGAAGCAAATGCTGCTACCAATGACCCACGATTCGATTGTGTCTCAAGACTGA

Coding sequence (CDS)

ATGTTGAAAAGAGATTGTCTGATGGAACGCGATTTCGAGGGCGGTGATGAACTACCCCACTTTTTGAGGACCAACATTATTAATCATGGCTGGGAACAACTATGTACAAAACCCAAACCTGTCGAGGCTCAATTGGTGAAGGATCTCTACGCAAATATTGACAAGAATGAGGGCTTTCTAGTCATAGTTCACGGCATTGCAGTGGATTGGAGTCTTGGAGCAATCAATTCCTTGTTCAACCTTCAAGACTTTCCCCATGCGGTGTTCAACGAAATGGTAGTTGCTCATTCCAATGAGCAACTTAATGTTGTTGTGCGTGAGGTGGGAGTTGAAGGGGCCCAATGGAGGTTATCAAGGACTGGAGCGAGGACTTTCCAATCAATCTACCTGAAGAGTGAAGCCAATACTTGGCTTGGTTTTGTGAAGCAAATGCTGCTACCAATGACCCACGATTCGATTGTGTCTCAAGACTGA

Protein sequence

MLKRDCLMERDFEGGDELPHFLRTNIINHGWEQLCTKPKPVEAQLVKDLYANIDKNEGFLVIVHGIAVDWSLGAINSLFNLQDFPHAVFNEMVVAHSNEQLNVVVREVGVEGAQWRLSRTGARTFQSIYLKSEANTWLGFVKQMLLPMTHDSIVSQD
Homology
BLAST of Lag0011491 vs. NCBI nr
Match: PON70375.1 (hypothetical protein PanWU01x14_080440 [Parasponia andersonii])

HSP 1 Score: 90.5 bits (223), Expect = 1.4e-14
Identity = 48/141 (34.04%), Postives = 72/141 (51.06%), Query Frame = 0

Query: 17  ELPHFLRTNIINHGWEQLCTKPKPVEAQLVKDLYANIDKNEGFLVIVHGIAVDWSLGAIN 76
           E P F+   II H W+  C  P+     LV++ Y N+   +   V + G+ V  S+ AIN
Sbjct: 79  EQPPFIADVIIQHNWQLFCAHPEDPIVPLVREFYTNMTNPDDDTVYIRGVQVPLSVEAIN 138

Query: 77  SLFNLQDFPHAVFNEMVVAHSNEQLNVVVREVGVEGAQWRLSRTGARTFQSIYLKSEANT 136
           ++F+L D P    +E V   +  +L +V+  V + GA+W +S  GA T     L   A  
Sbjct: 139 TIFSLGD-PIDEHSEFVEDITKPELVIVLETVAIVGAEWNVSSQGAYTCLRSSLNPPAKV 198

Query: 137 WLGFVKQMLLPMTHDSIVSQD 158
           W  F+K  LLP TH   VS++
Sbjct: 199 WYHFLKSRLLPTTHGKTVSKE 218

BLAST of Lag0011491 vs. NCBI nr
Match: EXB53755.1 (hypothetical protein L484_022412 [Morus notabilis])

HSP 1 Score: 88.6 bits (218), Expect = 5.3e-14
Identity = 48/139 (34.53%), Postives = 70/139 (50.36%), Query Frame = 0

Query: 19  PHFLRTNIINHGWEQLCTKPKPVEAQLVKDLYANIDKNEGFLVIVHGIAVDWSLGAINSL 78
           P F+   I  HGW Q C  P      LV++ YAN+       V V  + V ++  AINS+
Sbjct: 4   PAFITRVIHQHGWRQFCQHPSNPIVPLVREFYANLLDFNQETVFVQNVKVPFTARAINSI 63

Query: 79  FNLQDFPHAVFNEMVVAHSNEQLNVVVREVGVEGAQWRLSRTGARTFQSIYLKSEANTWL 138
           F L++     + +     ++EQL VV+ EV +EGA W++S  GA T     LK  A  W 
Sbjct: 64  FGLEEVVDE-YVDFASEVTDEQLEVVLAEVAIEGATWQISPQGAYTCIRKELKRHAQIWY 123

Query: 139 GFVKQMLLPMTHDSIVSQD 158
            F+    +P TH   V++D
Sbjct: 124 HFLTARFMPSTHGKTVAKD 141

BLAST of Lag0011491 vs. NCBI nr
Match: XP_038898613.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida])

HSP 1 Score: 82.8 bits (203), Expect = 2.9e-12
Identity = 47/154 (30.52%), Postives = 74/154 (48.05%), Query Frame = 0

Query: 5   DCLMERDF-EGGDELPHFLRTNIINHGWEQLCTKPKPVEAQLVKDLYANIDKNEGFLVIV 64
           D L+E  F      LP  + + I+ HGW+     P  +  Q+V D Y          V  
Sbjct: 207 DMLIEMGFYPAPTPLPDLITSIIVEHGWDTFYQCPSIIVPQVVHDFYRGHLHENRDAVTF 266

Query: 65  HGIAVDWSLGAINSLFNLQDFPHAVFNEMVVAHSNEQLNVVVREVGVEGAQWRLSRTGAR 124
            G  V +S   IN L+ ++D P A  N+++   + E +   ++ +   G +W +S  G R
Sbjct: 267 KGETVYFSTKNINGLYQMRDNPDAPGNKIIDDPTEELMRNALKVLAQPGTRWTVSPKGIR 326

Query: 125 TFQSIYLKSEANTWLGFVKQMLLPMTHDSIVSQD 158
           T +S  L S+   W+  VK+ L+P THD  VS+D
Sbjct: 327 TLESKSLLSKGRLWVYLVKKQLIPTTHDRTVSKD 360

BLAST of Lag0011491 vs. NCBI nr
Match: EXB77427.1 (hypothetical protein L484_000483 [Morus notabilis])

HSP 1 Score: 79.0 bits (193), Expect = 4.2e-11
Identity = 49/161 (30.43%), Postives = 77/161 (47.83%), Query Frame = 0

Query: 1   MLKRDCLMERDF----EGGDELPHFLRTNIINHGWEQLCTKPKPVEAQLVKDLYANIDKN 60
           M KR   MER F          P F+ + I  H W   C  P     QLV++  A  D  
Sbjct: 49  MNKRALHMERGFVYRRGRPSGYPSFIHSVIAAHKWHSFCHNPHAATVQLVREYAAEPD-- 108

Query: 61  EGFLVIVHGIAVDWSLGAINSLFNLQDFPHAVFNEMVVAHSNEQLNVVVREVGVEGAQWR 120
               + V G  + ++  AINSL++L D     FN    + + +QL+ V+ E+ VEG +WR
Sbjct: 109 ---TIFVRGQLIPFTSEAINSLYDLPDVEDH-FNNFADSLNEDQLDEVINELCVEGTEWR 168

Query: 121 LSRTGARTFQSIYLKSEANTWLGFVKQMLLPMTHDSIVSQD 158
            +  G+ TF    L+  +  W  F++  L+P +H  +V ++
Sbjct: 169 RATRGSMTFPRECLQPGSKIWYHFLRFRLMPSSHYRLVHKE 203

BLAST of Lag0011491 vs. NCBI nr
Match: XP_038904385.1 (uncharacterized protein LOC120090747 [Benincasa hispida])

HSP 1 Score: 78.6 bits (192), Expect = 5.5e-11
Identity = 46/154 (29.87%), Postives = 72/154 (46.75%), Query Frame = 0

Query: 5   DCLMERDF-EGGDELPHFLRTNIINHGWEQLCTKPKPVEAQLVKDLYANIDKNEGFLVIV 64
           D +ME  F      LP F    ++ HGWE        +   +V+  Y          VI+
Sbjct: 175 DMMMEMGFIPASTPLPDFTSV-VLEHGWETFYQCLSIIIPTVVRAFYKGRLHGTKDAVIM 234

Query: 65  HGIAVDWSLGAINSLFNLQDFPHAVFNEMVVAHSNEQLNVVVREVGVEGAQWRLSRTGAR 124
            G  V +S   IN L+ ++D P A  N+++     E++   +R +   G QW +S  G +
Sbjct: 235 KGCIVPFSARDINELYKMKDIPDASGNKIIDDPQEEKMEDALRTLTQSGTQWSVSLKGIK 294

Query: 125 TFQSIYLKSEANTWLGFVKQMLLPMTHDSIVSQD 158
           T  S  L  EA  W+  VK+ ++P +HD  VS+D
Sbjct: 295 TLASSKLLPEARLWVYLVKRRIIPTSHDKTVSRD 327

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON70375.11.4e-1434.04hypothetical protein PanWU01x14_080440 [Parasponia andersonii][more]
EXB53755.15.3e-1434.53hypothetical protein L484_022412 [Morus notabilis][more]
XP_038898613.12.9e-1230.52LOW QUALITY PROTEIN: uncharacterized protein LOC120086174 [Benincasa hispida][more]
EXB77427.14.2e-1130.43hypothetical protein L484_000483 [Morus notabilis][more]
XP_038904385.15.5e-1129.87uncharacterized protein LOC120090747 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011491.1Lag0011491.1mRNA