Lag0011482 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011482
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionGag/pol protein
Locationchr1: 25988333 .. 25992627 (-)
RNA-Seq ExpressionLag0011482
SyntenyLag0011482
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTGTGTTCCCTTAAGTGGTGTCTCCGGGTCTTGAACAATGGGCCCTACCCTCTTTATGGCACGAGAGGGTTTTCTGTTTGATGGTTGGACCACAAACAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGGTATCCCAGGGGTAAAACGGTAATTTGACCTAGCTGGGGTACGAACACACGTGAAGGGCTAACTTGCTGTTGACGGTCAATATCCGTGGACACAGAAATATGTCTGCAGTGAGAAGAGTGCAGCTGTGGTTCTTTAGTGGAGTGAACCACAGTTAACGAATATTGATTAACTTGGTTAATGAGTTTAACCAACTAATCTCATATCGTTGGAGCTTCTGATCTGTAGGTCCATTAGGTCCCACCGGTAGTTCATTTAGGGCGTTGAGGTAAAATTCTAAGGATGGATTAAATATTCGAAGGTGTTCGAATATTATTCTAAAATATGAATTTGGTTCATATTAAAACTATAGGTTATAATTAATATGCATTGGATATATATTAATACTATAGTTTTGAGAGAGAAAATAGTAATTGAATATGTGATGTTCAATTTTATTTTAATATTTATTAATTAATTTTGAATTAATTAATTGATTTAGTTTAATTAAATTTGATTTAATTAAACTATAAGATAAGAGGGATATTAATTTAAATAGGATTTAAATTAATGTTATTTTAATTAATTTAGATTAATTAAAATACAATACAATTAATTGTAATTTAAAATTATGATTTTAAAATTATAATTAATTAAAAATATCAGATAACTGATATTTCAGTTATCTGATATTATGGGTTTTTTAAAAGAGACGTGGTTAAGTGTACAGTTGCAGAAATCACTCTGGATCTCACGTCTCTCTCCCTCTATCTCGCTCTCTCTGTTTTTGGTTTTCTCTGAGAAATCAGAGGGTTGCTTCCCAGGAGAAATCCTTAGAGTTTTTCGAGTTCCCACAAGCTCTCAGCGTGTATCCCTTTGAGAATACTGGTGAAACCTTGTGGTGGTGTTCGTGGCATTTTTTCCAGCGAAAACAGGGATTCCAAGTTGCTGTTTTTGGGAGCAATTCAGAGAAATTTTGGTGAATCGATCAAGAATTTCTACAAAGGTAACTGTATCTCGGCCTTAGATCAATAGGATCTTTTTATGTAGATTAGATCTATGTTGTAAGGGCTGTTTTAGCATGTTTTTATAAACAATTTCCAGCATGTTTAAACTTGTTAAATTGCTGAATTTTGCCCAACGTATTGGTATTTTGTTCTTAAATTAATCCGGGGTTAAAGGTTCTGTTTTGTTTTTCCGCTGCGCGAGGGCTTTCATCCCTTCATCCTCAACTATACTTTATGTTTCAGTGAAGTTCTACTTAAGATTGGGGGCTACAGAGGGGATATGCACTCCCTATTAAACAAAAAGCAAGTAACCGGGGATATGCACTCCCTATTAAACAAAAAGCACCTATGTTTAGCATGTTCTACTAAAATTTACATGTTCAAACCTATTCTCTTATTATTTTCCTACAAGGACTGATATGTGGATGCAGGGAACCAAATTTTAGGCTAACGGGGGCTTGAGGCCGAGGTCAACCCTAGCCTTTTCCCTAACTTTTCTCTTACAGACATGAACCTGAAATGAAGCACTCCGAATGACCCAGTATGAGGCCGACCAGGCAAGCCGAAAGGGAGATAGCTGTGCTCGGCCTCTTCTCGAGGCCGAGGCCGACCAGCACCACTTTTGTAATCTCTCACCCTTTTTCATTTCCATTTCATCTAACCCCTATTCAGGGAATGTCTACTTTGTGTGTTCCTATCCTACTTTGCAGGATGACGATAAAGCTGCACATAGGTCAACACAAGGCAAAGATTATTACTCTTAAATCGGGCTTAAGGAGCTCAACTTATAGCAGTAAGTCACCCCGAATCCCAATTCAAGAGTGGGGGCTTAATGTTATAGGCAATTTTGGACCACCCCGATGTACGAGGAGCTGACGAGGACAACCGGGGAGAAATCGGGCTGGGATACGAGCCAAGGAGGCGGAGCCGGCAAGCGGGACGGGCCAAAGCCGAAGGGGTCGGGATTTTGGCCCGACCCCCTACTCGGCCCGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCCCCACCGCCTCTGGATGCCCCGGTTTCACCTGGTTTGACCTAAAACGCCTCTGAATCCCTAAAAACCCTAGGAGGATGAACAAATATTTATACCCCTCTTCGCCGCTGAAGAGGGGGACTCTCGGAATTCTATCCCTAAACTCTATTCTATATTTTCTACTCTCTCCTCTTACTCTTACTTTGTCACTCCCTACCGTTCTGTTTGCTGACTTAAGCATCAGAGCCGGTGTGGCGAGCACCACACCGGTGTGCAAGTTTACTGTCTTGCAGGCCACGTCTTCCCCCCTCTTCTACAAATTTTTCGTTGGTGGCACGTGAAGGTCAGGTGAGATCCTCTGGCAAAAATCGACCATCAACAGGTTTAGCAGCTAGCCTTGACTTAAAGGTTGAATAGATGGATGTTAAGACCATGGAGTGAAATTTCGAGCGATGTCATTATGTCGAAGGGCTCGACATGTTGGGAGAGGGAAATTTTTTTTTTTTTTTTTTTTTTTTTGCTATTTCAACGAAATTTCACTAAATTTTGAATTTTTGTCGAAATTTCAAGATTTCATTAAATTTCTTTTGTAATTATATTTATTTTTTTTTAATAAAATCACAAATCAATCACACATCACAACAGACGTGTCTACCTGACAGCTCTATCAGGCCGTCTTTCAAGTTTCACACTATTTTTTCCTTTTCATTTATAAGTTTATTCTTTCTTTTACTTTTTGTTTTAAAAAAAAACCTTTACTTTTTTGTACAGCTTTATTTGTTTGGTTTTTTAATTTCTTTCTTTTTTATTTACTTTTTATATATGGTTGATAATTGATTTATAAATACAAATATTTTAATTATTTTAAATTTTTAATCCATAAAATGATAATATAATATTAATAATATTTTACCTTTTATTTTTTTTTCATGTGTTACTTTATATTATTTATTTTACCATTTTGTCTAAAAATTGCTTAGAATTTAAACACTCATATGTTTGGTTGCATTTCCTCATAAGTGTTTTTATACACAACTTATTGTATACTTAAAAAGTCTTTTTAAAAAAGGTTGGTCTCAAGTGTTTCTCTCAAAATGTTTTATTTATGAATGTCATTTTTTAACAAAACATTTTTAGTGGTTGTCAAACACTAGAATCTTTTTCAAAATGATTTTTTTTTTCAAAATAAAACACTTGAAAAGTTAAACCAAACACACACTTACTGTTTGGTTGTCTATTTAAATATAGTCATAGTTGTTATATATCGATTACTTATAGTTTAATTAAGTCATTATAATTAAAATTTTATTCATTTAATAATTCAAACAATTTCTATCAATTGCTATAGTTCGTTCAAAAAAATTGTTGGTATCAACATTTCCATTGAAATTTCAATATAACTATTATATGCAATTTAAATATGATGGCTAAAAATGATTAACAGTAATATAATTAAACTACAATTAAATTTTGATTTAATAATTCAAACCATTTTCATCAGTTTCCATTTTTTTTCAAAATTCATGCACATATTAACATTTGAATCTGTTGATGGTCAAATTTCGACTAGGCCAACTGCTTAACCTTCACGTGACCCCAACAGTGAAATTGTTGAAGAGAAGGGGAAGATGTGACCTGCAAGACAAGTAAACGCTGCACACCGATGTGGTGTAGGCCACATACACTCCGATGCTTGAGTCAGTTCAGGAGGAGAGAAAACAATTTGTAGCCCCACAGTCTCGAAGAATGCTTGTGATTTTCAGTATTCTCTTTTTCGATCCCCTTCTCAGGTGGCCTCGAGGTGTCTTTATACCTTTCTCTTCTTAGGGTTTCTTCCGAGGCTCTGAGGGATTGTGGTCGGTTAATGCCCAAAATGGGCTCGGGCCCATTCCCTTGGTCGGCCATCTCCTCAGCCTCGTGAATGGGCCGAGGCCAAAGAGAAAGATGGAAGGGGAGAGGGGCGGCCTTCAACCCTCTTCTGGTTGTGCTGGGTTGCTTTCTGACATTCAGGCCTGA

mRNA sequence

ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGGTATCCCAGGGGTCCATTAGGTCCCACCGGTAGTTCATTTAGGGCGTTGAGCGAAAACAGGGATTCCAAGTTGCTGTTTTTGGGAGCAATTCAGAGAAATTTTGGTGAATCGATCAAGAATTTCTACAAAGCACTCCGAATGACCCAGTATGAGGCCGACCAGGCAAGCCGAAAGGGAGATAGCTGTGCTCGGCCTCTTCTCGAGGCCGAGGCCGACCAGCACCACTTTTGTAATCTCTCACCCTTTTTCATTTCCATTTCATCTAACCCCTATTCAGGGAATGTCTACTTTGTGTGTTCCTATCCTACTTTGCAGGATGACGATAAAGCTGCACATAGGCAATTTTGGACCACCCCGATGTACGAGGAGCTGACGAGGACAACCGGGGAGAAATCGGGCTGGGATACGAGCCAAGGAGGCGGAGCCGGCAAGCGGGACGGGCCAAAGCCGAAGGGGTCGGGATTTTGGCCCGACCCCCTACTCGGCCCGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCCCCACCGCCTCTGGATGCCCCGGTTTCACCTGGCCACGTCTTCCCCCCTCTTCTACAAATTTTTCGTTGGTGGCACGTGAAGGTCAGGTGAGATCCTCTGGCAAAAATCGACCATCAACAGGTTTAGCAGCTAGCCTTGACTTAAAGGGTTTCTTCCGAGGCTCTGAGGGATTGTGGTCGGTTAATGCCCAAAATGGGCTCGGGCCCATTCCCTTGGTCGGCCATCTCCTCAGCCTCGTGAATGGGCCGAGGCCAAAGAGAAAGATGGAAGGGGAGAGGGGCGGCCTTCAACCCTCTTCTGGTTGTGCTGGGTTGCTTTCTGACATTCAGGCCTGA

Coding sequence (CDS)

ATGAGGGATTGTCCTTTGATTTGTACGGGTGAGAGTGGCCAGTTCGCCGACTCAATAAGCCTACCATTTTGGGGACAAGACCGAGTGGGGAGCTGGGAACGTAGTCTTACAAGATGGAATTCACTCCTTCCTGATATGAGGGTAAGTAGAGGTTGTTCATTAGAGGAGCACTGGTACTTAAGGACCAAGAGGTATCCCAGGGGTCCATTAGGTCCCACCGGTAGTTCATTTAGGGCGTTGAGCGAAAACAGGGATTCCAAGTTGCTGTTTTTGGGAGCAATTCAGAGAAATTTTGGTGAATCGATCAAGAATTTCTACAAAGCACTCCGAATGACCCAGTATGAGGCCGACCAGGCAAGCCGAAAGGGAGATAGCTGTGCTCGGCCTCTTCTCGAGGCCGAGGCCGACCAGCACCACTTTTGTAATCTCTCACCCTTTTTCATTTCCATTTCATCTAACCCCTATTCAGGGAATGTCTACTTTGTGTGTTCCTATCCTACTTTGCAGGATGACGATAAAGCTGCACATAGGCAATTTTGGACCACCCCGATGTACGAGGAGCTGACGAGGACAACCGGGGAGAAATCGGGCTGGGATACGAGCCAAGGAGGCGGAGCCGGCAAGCGGGACGGGCCAAAGCCGAAGGGGTCGGGATTTTGGCCCGACCCCCTACTCGGCCCGCTCGCGCGGGCCGAGCCCGTTCGGTCTCGTCTGGTCCCCACCGCCTCTGGATGCCCCGGTTTCACCTGGCCACGTCTTCCCCCCTCTTCTACAAATTTTTCGTTGGTGGCACGTGAAGGTCAGGTGAGATCCTCTGGCAAAAATCGACCATCAACAGGTTTAGCAGCTAGCCTTGACTTAAAGGGTTTCTTCCGAGGCTCTGAGGGATTGTGGTCGGTTAATGCCCAAAATGGGCTCGGGCCCATTCCCTTGGTCGGCCATCTCCTCAGCCTCGTGAATGGGCCGAGGCCAAAGAGAAAGATGGAAGGGGAGAGGGGCGGCCTTCAACCCTCTTCTGGTTGTGCTGGGTTGCTTTCTGACATTCAGGCCTGA

Protein sequence

MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMRVSRGCSLEEHWYLRTKRYPRGPLGPTGSSFRALSENRDSKLLFLGAIQRNFGESIKNFYKALRMTQYEADQASRKGDSCARPLLEAEADQHHFCNLSPFFISISSNPYSGNVYFVCSYPTLQDDDKAAHRQFWTTPMYEELTRTTGEKSGWDTSQGGGAGKRDGPKPKGSGFWPDPLLGPLARAEPVRSRLVPTASGCPGFTWPRLPPSSTNFSLVAREGQVRSSGKNRPSTGLAASLDLKGFFRGSEGLWSVNAQNGLGPIPLVGHLLSLVNGPRPKRKMEGERGGLQPSSGCAGLLSDIQA
Homology
[Close]
BLAST of Lag0011482 vs. NCBI nr
Match: TYK05792.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 6.4e-12
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR 48
           +RDCPL CTGESGQ  DSI L FWGQDRVGSWE + TRWNS +P  R
Sbjct: 566 IRDCPLTCTGESGQIVDSICLSFWGQDRVGSWEHNHTRWNSRIPTFR 612

[Close]
BLAST of Lag0011482 vs. NCBI nr
Match: KAA0026081.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 81.6 bits (200), Expect = 1.4e-11
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR 48
           MRDCPLICTGESGQ  DSI L F GQDR+GSWE + TRWN LLP  R
Sbjct: 93  MRDCPLICTGESGQIVDSICLSFLGQDRLGSWEHNYTRWNKLLPVFR 139

[Close]
BLAST of Lag0011482 vs. NCBI nr
Match: KAA0047821.1 (uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa])

HSP 1 Score: 75.5 bits (184), Expect = 1.0e-09
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 3   DCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR 48
           DCPLI T ESGQ ADS+ L FWGQDRV SWE + TRWNSLLP  R
Sbjct: 456 DCPLIYTSESGQIADSMFLSFWGQDRVESWEHNHTRWNSLLPTFR 500

[Close]
BLAST of Lag0011482 vs. NCBI nr
Match: TYK08698.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 8.2e-07
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRVGSWE 34
           +RDCPLICTGESGQ ADSI L FWGQDRVG W+
Sbjct: 308 IRDCPLICTGESGQIADSIWLSFWGQDRVGRWK 340

[Close]
BLAST of Lag0011482 vs. NCBI nr
Match: KAA0049822.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 8.2e-07
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRVGSWE 34
           +RDCPLICTGESGQ ADSI L FWGQDRVG W+
Sbjct: 308 IRDCPLICTGESGQIADSIWLSFWGQDRVGRWK 340

[Close]
BLAST of Lag0011482 vs. ExPASy TrEMBL
Match: A0A5D3C3J6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G002960 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.1e-12
Identity = 34/47 (72.34%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR 48
           +RDCPL CTGESGQ  DSI L FWGQDRVGSWE + TRWNS +P  R
Sbjct: 566 IRDCPLTCTGESGQIVDSICLSFWGQDRVGSWEHNHTRWNSRIPTFR 612

[Close]
BLAST of Lag0011482 vs. ExPASy TrEMBL
Match: A0A5A7SPG1 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 7.0e-12
Identity = 35/47 (74.47%), Postives = 37/47 (78.72%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR 48
           MRDCPLICTGESGQ  DSI L F GQDR+GSWE + TRWN LLP  R
Sbjct: 93  MRDCPLICTGESGQIVDSICLSFLGQDRLGSWEHNYTRWNKLLPVFR 139

[Close]
BLAST of Lag0011482 vs. ExPASy TrEMBL
Match: A0A5A7U2P4 (Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00730 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.0e-10
Identity = 33/45 (73.33%), Postives = 35/45 (77.78%), Query Frame = 0 

Query: 3   DCPLICTGESGQFADSISLPFWGQDRVGSWERSLTRWNSLLPDMR 48
           DCPLI T ESGQ ADS+ L FWGQDRV SWE + TRWNSLLP  R
Sbjct: 456 DCPLIYTSESGQIADSMFLSFWGQDRVESWEHNHTRWNSLLPTFR 500

[Close]
BLAST of Lag0011482 vs. ExPASy TrEMBL
Match: A0A5A7U202 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1591G00150 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-07
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRVGSWE 34
           +RDCPLICTGESGQ ADSI L FWGQDRVG W+
Sbjct: 308 IRDCPLICTGESGQIADSIWLSFWGQDRVGRWK 340

[Close]
BLAST of Lag0011482 vs. ExPASy TrEMBL
Match: A0A5D3CBX3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118G00530 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 3.9e-07
Identity = 27/33 (81.82%), Postives = 29/33 (87.88%), Query Frame = 0 

Query: 1   MRDCPLICTGESGQFADSISLPFWGQDRVGSWE 34
           +RDCPLICTGESGQ ADSI L FWGQDRVG W+
Sbjct: 308 IRDCPLICTGESGQIADSIWLSFWGQDRVGRWK 340

The following BLAST results are available for this feature:
BLAST of Lag0011482 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK05792.16.4e-1272.34gag/pol protein [Cucumis melo var. makuwa][more]
KAA0026081.11.4e-1174.47pol protein [Cucumis melo var. makuwa][more]
KAA0047821.11.0e-0973.33uncharacterized protein E6C27_scaffold133G00730 [Cucumis melo var. makuwa][more]
TYK08698.18.2e-0781.82reverse transcriptase [Cucumis melo var. makuwa][more]
KAA0049822.18.2e-0781.82reverse transcriptase [Cucumis melo var. makuwa][more]
BLAST of Lag0011482 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0011482 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3C3J63.1e-1272.34Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G00296... [more]
A0A5A7SPG17.0e-1274.47Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00120 PE=... [more]
A0A5A7U2P45.0e-1073.33Integrase catalytic domain-containing protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7U2023.9e-0781.82Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold15... [more]
A0A5D3CBX33.9e-0781.82Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11... [more]
BLAST of Lag0011482 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 324..350
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 190..222

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011482.1Lag0011482.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding