Lag0011462 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011462
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionSAUR-like auxin-responsive protein family
Locationchr1: 25491290 .. 25491610 (+)
RNA-Seq ExpressionLag0011462
SyntenyLag0011462
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGAGAAGAAGAAAATGAAGGTGAAAAAAGGATGGTTGGCTGTGGAAGTAGGGTTGCAAGAGGAAGACGGAAGAATAGAGCGGTTTGTGGTTCCCATATCTTATTTATATCATCCTCTTTTCAAGAAGCTCTTGGACAAAGCTCAAGAAATCTATGGCTACCATGTTAATGGCCCGCTTCGGCTTCCGTGCTCGGTCGACGACTTTCTCCAACTCCGGTGGTGGATTGAGAAAGAATCCGACCAACACAACAACAAACAAAATCATCACCACCACCACTACCACCTTCCGCTCGCTCTTTCTTTCCAATCTTGTTGA

mRNA sequence

ATGCCTGAGAAGAAGAAAATGAAGGTGAAAAAAGGATGGTTGGCTGTGGAAGTAGGGTTGCAAGAGGAAGACGGAAGAATAGAGCGGTTTGTGGTTCCCATATCTTATTTATATCATCCTCTTTTCAAGAAGCTCTTGGACAAAGCTCAAGAAATCTATGGCTACCATGTTAATGGCCCGCTTCGGCTTCCGTGCTCGGTCGACGACTTTCTCCAACTCCGGTGGTGGATTGAGAAAGAATCCGACCAACACAACAACAAACAAAATCATCACCACCACCACTACCACCTTCCGCTCGCTCTTTCTTTCCAATCTTGTTGA

Coding sequence (CDS)

ATGCCTGAGAAGAAGAAAATGAAGGTGAAAAAAGGATGGTTGGCTGTGGAAGTAGGGTTGCAAGAGGAAGACGGAAGAATAGAGCGGTTTGTGGTTCCCATATCTTATTTATATCATCCTCTTTTCAAGAAGCTCTTGGACAAAGCTCAAGAAATCTATGGCTACCATGTTAATGGCCCGCTTCGGCTTCCGTGCTCGGTCGACGACTTTCTCCAACTCCGGTGGTGGATTGAGAAAGAATCCGACCAACACAACAACAAACAAAATCATCACCACCACCACTACCACCTTCCGCTCGCTCTTTCTTTCCAATCTTGTTGA

Protein sequence

MPEKKKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGYHVNGPLRLPCSVDDFLQLRWWIEKESDQHNNKQNHHHHHYHLPLALSFQSC
Homology
BLAST of Lag0011462 vs. NCBI nr
Match: KGN54862.1 (hypothetical protein Csa_012431 [Cucumis sativus])

HSP 1 Score: 205.3 bits (521), Expect = 2.6e-49
Identity = 99/113 (87.61%), Postives = 101/113 (89.38%), Query Frame = 0

Query: 1   MPEKKKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGYHVNGP 60
           MPEKKKMKVKKGWLAVEVGLQEED R+ERFVVPISYLYHPLFK LLDKAQEIYGYH NGP
Sbjct: 1   MPEKKKMKVKKGWLAVEVGLQEEDERLERFVVPISYLYHPLFKNLLDKAQEIYGYHANGP 60

Query: 61  LRLPCSVDDFLQLRWWIEKESDQHNNKQN-------HHHHHYHLPLALSFQSC 107
           LRLPCSVDDFLQLRW IEKESDQH +KQN       HHHHHYHLPLALSFQSC
Sbjct: 61  LRLPCSVDDFLQLRWQIEKESDQHIDKQNHHRHRYRHHHHHYHLPLALSFQSC 113

BLAST of Lag0011462 vs. NCBI nr
Match: KAG6603262.1 (Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 200.3 bits (508), Expect = 8.4e-48
Identity = 95/113 (84.07%), Postives = 102/113 (90.27%), Query Frame = 0

Query: 1   MPEKKKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGYHVNGP 60
           MPEKKKMKVKKGWLAVEVGLQEEDGRIERFVVPISYL+HPLFK LLDKAQE+YGYH NGP
Sbjct: 1   MPEKKKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLHHPLFKNLLDKAQEVYGYHANGP 60

Query: 61  LRLPCSVDDFLQLRWWIEKESDQHNNKQNHHHH-------HYHLPLALSFQSC 107
           LRLPCSVDDFLQ+RW IEKESDQ+N+KQNH HH       HY++PLALSFQSC
Sbjct: 61  LRLPCSVDDFLQIRWQIEKESDQNNDKQNHQHHRHRHYPYHYYVPLALSFQSC 113

BLAST of Lag0011462 vs. NCBI nr
Match: KAG6603263.1 (Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 198.0 bits (502), Expect = 4.2e-47
Identity = 95/113 (84.07%), Postives = 102/113 (90.27%), Query Frame = 0

Query: 1   MPEKKKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGYHVNGP 60
           MPEKKKMKVKKGWLAVEVGLQEEDGRIERFVVPISYL+HPLFK LLDKAQE+YGYH NGP
Sbjct: 1   MPEKKKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLHHPLFKNLLDKAQEVYGYHANGP 60

Query: 61  LRLPCSVDDFLQLRWWIEKESDQHNNKQN-------HHHHHYHLPLALSFQSC 107
           LRLPCSVDDFLQLRW IEKESDQ+N+KQN       H+ HHY++PLALSFQSC
Sbjct: 61  LRLPCSVDDFLQLRWQIEKESDQNNDKQNQQNHRHRHYPHHYYVPLALSFQSC 113

BLAST of Lag0011462 vs. NCBI nr
Match: XP_022154927.1 (auxin-responsive protein SAUR32-like [Momordica charantia])

HSP 1 Score: 194.1 bits (492), Expect = 6.0e-46
Identity = 96/112 (85.71%), Postives = 101/112 (90.18%), Query Frame = 0

Query: 1   MPEKKKMKVKKGWLAVEVGLQ-EEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGYHVNG 60
           M E+KKMKVKKGWLAVEVGLQ EEDGRIERFVVPISYLYHPLFKKLLDKAQE+YGYH NG
Sbjct: 1   MGERKKMKVKKGWLAVEVGLQEEEDGRIERFVVPISYLYHPLFKKLLDKAQEVYGYHANG 60

Query: 61  PLRLPCSVDDFLQLRWWIEKESDQH---NNKQNH--HHHHYHLPLALSFQSC 107
           PLRLPCSVDDFLQLRW I+KESDQH   N++  H  HHHHYHLPLALSFQSC
Sbjct: 61  PLRLPCSVDDFLQLRWRIKKESDQHDGQNDRHRHRQHHHHYHLPLALSFQSC 112

BLAST of Lag0011462 vs. NCBI nr
Match: XP_002272614.1 (PREDICTED: auxin-responsive protein SAUR32-like [Vitis vinifera] >RVX21191.1 Auxin-responsive protein SAUR32 [Vitis vinifera])

HSP 1 Score: 171.8 bits (434), Expect = 3.2e-39
Identity = 79/106 (74.53%), Postives = 91/106 (85.85%), Query Frame = 0

Query: 1   MPEKKKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGYHVNGP 60
           M E+KKMKVKKGWLAVEVGL+EEDG  +RFV+PISYLYHPLFK+LL+KAQE+YG+H  GP
Sbjct: 1   MQEEKKMKVKKGWLAVEVGLEEEDGGFQRFVIPISYLYHPLFKRLLEKAQEVYGFHTAGP 60

Query: 61  LRLPCSVDDFLQLRWWIEKESDQHNNKQNHHHHHYHLPLALSFQSC 107
           LRLPCSVDDFL LRW IE+E+  H+   NHHHHH+HL  ALSF SC
Sbjct: 61  LRLPCSVDDFLHLRWRIERENGSHH---NHHHHHHHLSGALSFHSC 103

BLAST of Lag0011462 vs. ExPASy Swiss-Prot
Match: Q9ZUZ3 (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-12
Identity = 39/94 (41.49%), Postives = 60/94 (63.83%), Query Frame = 0

Query: 4   KKKMKVK---KGWLAVEVGLQEEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGYHVNGP 63
           K+ +KVK   KG LA++VG Q E+   +RF+VP+ Y  HPLF +LL +A++ YG+   G 
Sbjct: 16  KQSVKVKDVPKGCLAIKVGSQGEEQ--QRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGT 75

Query: 64  LRLPCSVDDFLQLRWWIEKESDQHNNKQNHHHHH 95
           + +PC V++F  ++  I+ E   +N   NHHH H
Sbjct: 76  ITIPCHVEEFRYVQALIDGERSVYNG-NNHHHRH 106

BLAST of Lag0011462 vs. ExPASy Swiss-Prot
Match: P33083 (Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 3.6e-09
Identity = 33/67 (49.25%), Postives = 45/67 (67.16%), Query Frame = 0

Query: 5  KKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGY-HVNGPLRL 64
          K + V+KG+LAV VG      ++ RFV+P+SYL  P F+ LL +A+E +GY H NG L +
Sbjct: 21 KAVDVEKGYLAVYVG-----EKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTI 80

Query: 65 PCSVDDF 71
          PCS D F
Sbjct: 81 PCSEDVF 82

BLAST of Lag0011462 vs. ExPASy Swiss-Prot
Match: P33080 (Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 1.8e-08
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 0

Query: 5  KKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGY-HVNGPLRL 64
          K ++V KG+L V VG      ++ RF++P+SYL  P F+ LL++A+E +GY H  G L +
Sbjct: 21 KSVEVPKGYLVVYVG-----DKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTI 80

Query: 65 PCSVDDFL 72
          PC  D+FL
Sbjct: 81 PCKEDEFL 83

BLAST of Lag0011462 vs. ExPASy Swiss-Prot
Match: P33079 (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-08
Identity = 29/70 (41.43%), Postives = 45/70 (64.29%), Query Frame = 0

Query: 5  KKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGY-HVNGPLRL 64
          K++ V KG+ AV VG      ++ RF +P+SYL  P F++LL +A+E +GY H  G L +
Sbjct: 22 KRVDVPKGYAAVYVG-----DKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTI 81

Query: 65 PCSVDDFLQL 74
          PC  ++FL +
Sbjct: 82 PCKEEEFLNV 86

BLAST of Lag0011462 vs. ExPASy Swiss-Prot
Match: P33081 (Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 1.2e-07
Identity = 31/67 (46.27%), Postives = 42/67 (62.69%), Query Frame = 0

Query: 5  KKMKVKKGWLAVEVGLQEEDGRIERFVVPISYLYHPLFKKLLDKAQEIYGY-HVNGPLRL 64
          K     KG+LAV VG      +++RFV+P+SYL  P F+ LL +A+E +GY H  G L +
Sbjct: 13 KAADAPKGYLAVYVG-----EKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTI 72

Query: 65 PCSVDDF 71
          PCS D F
Sbjct: 73 PCSEDVF 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN54862.12.6e-4987.61hypothetical protein Csa_012431 [Cucumis sativus][more]
KAG6603262.18.4e-4884.07Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG6603263.14.2e-4784.07Auxin-responsive protein SAUR32, partial [Cucurbita argyrosperma subsp. sororia][more]
XP_022154927.16.0e-4685.71auxin-responsive protein SAUR32-like [Momordica charantia][more]
XP_002272614.13.2e-3974.53PREDICTED: auxin-responsive protein SAUR32-like [Vitis vinifera] >RVX21191.1 Aux... [more]
Match NameE-valueIdentityDescription
Q9ZUZ31.6e-1241.49Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S... [more]
P330833.6e-0949.25Auxin-induced protein 6B OS=Glycine max OX=3847 PE=2 SV=1[more]
P330801.8e-0844.12Auxin-induced protein X10A OS=Glycine max OX=3847 PE=2 SV=1[more]
P330794.0e-0841.43Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1[more]
P330811.2e-0746.27Auxin-induced protein 15A OS=Glycine max OX=3847 PE=2 SV=1[more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 6..75
e-value: 4.5E-18
score: 65.2
NoneNo IPR availablePANTHERPTHR31374AUXIN-INDUCED PROTEIN-LIKE-RELATEDcoord: 2..90
NoneNo IPR availablePANTHERPTHR31374:SF228OS02G0769100 PROTEINcoord: 2..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011462.1Lag0011462.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin