Lag0011458 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011458
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Ribonuclease H
Location	chr1: 25279305 .. 25279901 (-)
RNA-Seq Expression	Lag0011458
Synteny	Lag0011458

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGAGGGCGAGGTTGACCAAAGATGGCCGAGACAAACAAGAACCCCACGAGAGATCAGAACCATCTTTGGAGGACCAGCTGGAGGAGGTTCAAGTAGGAAAAGGAAAGCTATTGCCAGAGAAGCAAGGTTCGAACCAGAATATCGAGGTATATACTCTGTCCATCTAGCAAAGACACACCCCCCTTTGGAGTTCACTGAGGCCGAGGCAACAAGCATTCATCAGCCACATAATGATGCTCTGGTGGTCACTCTAATGGTAGCCAATGTGAAAATCCATCGGATCCTAATTGATGGAGAAAGCTCGGCTGATGTCCTTTCTCTAACAGCCTTTAAAGCAATGCAGTTAGGGAGAGAACTCTTAAAGCCAAGTCTTACCCCACTTGTAGGATTTGGAGGAGAAAGAGTGACCCCAGAGGGTAGCATAGAATTTTCAGTGATCTTTGGGGATGGACAGAATACAGTAACCAAGATAATAAACTTCCTAGTCGTGGATTGTATGCCAGCCTACAATGCAATCCTAGGAAGGCCAACCTTGCATGAAATGAAGGCCATAGCTTCAACTCACCATCAGTTGCTGAAGTTTCCAACTTAG

mRNA sequence

ATGGCCGAGGGCGAGGTTGACCAAAGATGGCCGAGACAAACAAGAACCCCACGAGAGATCAGAACCATCTTTGGAGGACCAGCTGGAGGAGGTTCAAGTAGGAAAAGGAAAGCTATTGCCAGAGAAGCAAGGTTCGAACCAGAATATCGAGGTATATACTCTGTCCATCTAGCAAAGACACACCCCCCTTTGGAGTTCACTGAGGCCGAGGCAACAAGCATTCATCAGCCACATAATGATGCTCTGGTGGTCACTCTAATGGTAGCCAATGTGAAAATCCATCGGATCCTAATTGATGGAGAAAGCTCGGCTGATGTCCTTTCTCTAACAGCCTTTAAAGCAATGCAGTTAGGGAGAGAACTCTTAAAGCCAAGTCTTACCCCACTTGTAGGATTTGGAGGAGAAAGAGTGACCCCAGAGGGTAGCATAGAATTTTCAGTGATCTTTGGGGATGGACAGAATACAGTAACCAAGATAATAAACTTCCTAGTCGTGGATTGTATGCCAGCCTACAATGCAATCCTAGGAAGGCCAACCTTGCATGAAATGAAGGCCATAGCTTCAACTCACCATCAGTTGCTGAAGTTTCCAACTTAG

Coding sequence (CDS)

ATGGCCGAGGGCGAGGTTGACCAAAGATGGCCGAGACAAACAAGAACCCCACGAGAGATCAGAACCATCTTTGGAGGACCAGCTGGAGGAGGTTCAAGTAGGAAAAGGAAAGCTATTGCCAGAGAAGCAAGGTTCGAACCAGAATATCGAGGTATATACTCTGTCCATCTAGCAAAGACACACCCCCCTTTGGAGTTCACTGAGGCCGAGGCAACAAGCATTCATCAGCCACATAATGATGCTCTGGTGGTCACTCTAATGGTAGCCAATGTGAAAATCCATCGGATCCTAATTGATGGAGAAAGCTCGGCTGATGTCCTTTCTCTAACAGCCTTTAAAGCAATGCAGTTAGGGAGAGAACTCTTAAAGCCAAGTCTTACCCCACTTGTAGGATTTGGAGGAGAAAGAGTGACCCCAGAGGGTAGCATAGAATTTTCAGTGATCTTTGGGGATGGACAGAATACAGTAACCAAGATAATAAACTTCCTAGTCGTGGATTGTATGCCAGCCTACAATGCAATCCTAGGAAGGCCAACCTTGCATGAAATGAAGGCCATAGCTTCAACTCACCATCAGTTGCTGAAGTTTCCAACTTAG

Protein sequence

MAEGEVDQRWPRQTRTPREIRTIFGGPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPPLEFTEAEATSIHQPHNDALVVTLMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLKPSLTPLVGFGGERVTPEGSIEFSVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEMKAIASTHHQLLKFPT

Homology

[Close]

BLAST of Lag0011458 vs. NCBI nr
Match: XP_022155186.1 (uncharacterized protein LOC111022321 [Momordica charantia])

HSP 1 Score: 196.4 bits (498), Expect = 2.3e-46
Identity = 99/173 (57.23%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 26  GPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPPLEFTEAEATSIHQPHNDALVVT 85
           GP    S RKRKA  REAR   +   +Y  ++      +EF+E EAT +  PHNDALV+T
Sbjct: 3   GPIERESERKRKAYVREARTSRKQNEVYHAYITNQQVTIEFSENEATHLLHPHNDALVIT 62

Query: 86  LMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLKPSLTPLVGFGGERVTPEGSIEF 145
           L +ANVK+HRIL+DG SSAD++S TA+KAM LG ++LK S  PLVGFGGERV  EG IE 
Sbjct: 63  LKIANVKVHRILVDGGSSADIISWTAYKAMDLGEKVLKSSPAPLVGFGGERVILEGRIEL 122

Query: 146 SVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEMKAIASTHHQLLKFPT 199
            V FG G  +VTK+++FLVV+   +YNAILGRPT+H +KAI ST+HQ  KFPT
Sbjct: 123 PVTFGSGPKSVTKMVDFLVVNYTSSYNAILGRPTMHMLKAIPSTYHQSXKFPT 175

[Close]

BLAST of Lag0011458 vs. NCBI nr
Match: XP_022158093.1 (uncharacterized protein LOC111024662 [Momordica charantia])

HSP 1 Score: 196.1 bits (497), Expect = 3.0e-46
Identity = 97/181 (53.59%), Postives = 125/181 (69.06%), Query Frame = 0


Query: 18  REIRTIFGGPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPPLEFTEAEATSIHQP 77
           +EI+TIFGGP      +KRKA  +EAR  P Y  +Y          ++F+E E T +  P
Sbjct: 65  KEIQTIFGGPTERELGKKRKASMQEARASPGYCKVYHASFTGQPSKIKFSEDETTRLFHP 124

Query: 78  HNDALVVTLMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLKPSLTPLVGFGGERV 137
           HNDALV+TL + N K+HRIL+DG SS  ++SLTA+KAM LG + LK +L PLVGFGGERV
Sbjct: 125 HNDALVITLKITNTKVHRILVDGGSSTGIISLTAYKAMDLGEKALKSNLAPLVGFGGERV 184

Query: 138 TPEGSIEFSVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEMKAIASTHHQLLKFP 197
             +  I+  V FG+G   +TKI+ FLVVD   +YNAILGRPT+H +KAI ST+H+ LKFP
Sbjct: 185 IQKCRIKLPVTFGNGPRNITKIVEFLVVDYSSSYNAILGRPTIHTLKAIPSTYHKSLKFP 244

Query: 198 T 199
           T
Sbjct: 245 T 245

[Close]

BLAST of Lag0011458 vs. NCBI nr
Match: XP_022158687.1 (uncharacterized protein LOC111025147 [Momordica charantia])

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-45
Identity = 98/174 (56.32%), Postives = 123/174 (70.69%), Query Frame = 0


Query: 25  GGPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPPLEFTEAEATSIHQPHNDALVV 84
           GGP    S RKRKA  REAR       +Y  ++A     +EF+E EAT +  PHNDALV+
Sbjct: 2   GGPIKRESGRKRKADVREARASLRQNKVYHAYIADRSVTIEFSEDEATHLLHPHNDALVI 61

Query: 85  TLMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLKPSLTPLVGFGGERVTPEGSIE 144
           TL +ANVK+HRIL+DG SSAD++S T +K M LG ++LK S  PL+GFG ERV PEG IE
Sbjct: 62  TLKIANVKVHRILVDGGSSADIISWTTYKVMDLGEKVLKSSPAPLIGFGRERVIPEGRIE 121

Query: 145 FSVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEMKAIASTHHQLLKFPT 199
             V FG G  +VTK+++FLVVD   +YNAILGR T+H +KAI ST+HQ +KFPT
Sbjct: 122 LHVTFGSGPKSVTKMMDFLVVDYTSSYNAILGRSTMHMLKAIPSTYHQSMKFPT 175

[Close]

BLAST of Lag0011458 vs. NCBI nr
Match: XP_022150028.1 (uncharacterized protein LOC111018300 [Momordica charantia])

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-45
Identity = 104/195 (53.33%), Postives = 127/195 (65.13%), Query Frame = 0


Query: 4   GEVDQRWPRQTRTPREIRTIFGGPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPP 63
           GE D + P      REIRTI GGP      RKRKA  RE R       IY   +AK    
Sbjct: 78  GENDSKSP-----AREIRTIMGGPMEREFGRKRKASIRETRTSQVQHEIYHTFVAKQPAK 137

Query: 64  LEFTEAEATSIHQPHNDALVVTLMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLK 123
           +EF+E EAT +  PHND LV+TL +AN K+HRIL+DG SSAD++SLTA+KAM LG    K
Sbjct: 138 IEFSEDEATHLLHPHNDVLVITLKIANAKVHRILVDGGSSADIISLTAYKAMDLGERGRK 197

Query: 124 PSLTPLVGFGGERVTPEGSIEFSVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEM 183
            S   LV F GERV PEG  E +V FG G  ++T I++FLV+D   +YNAILGRPT+H +
Sbjct: 198 SSPASLVRFRGERVIPEGRTELTVTFGSGPKSITTIMDFLVIDYASSYNAILGRPTIHML 257

Query: 184 KAIASTHHQLLKFPT 199
           KAI ST+HQ + FPT
Sbjct: 258 KAIPSTYHQSINFPT 267

[Close]

BLAST of Lag0011458 vs. NCBI nr
Match: XP_022146774.1 (uncharacterized protein LOC111015901 [Momordica charantia])

HSP 1 Score: 189.9 bits (481), Expect = 2.1e-44
Identity = 93/173 (53.76%), Postives = 122/173 (70.52%), Query Frame = 0


Query: 26  GPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPPLEFTEAEATSIHQPHNDALVVT 85
           GP    S RKRKA  REAR       +Y  ++A     +EF+E EAT +  PHNDALV+T
Sbjct: 3   GPIERESGRKRKANVREARASLGQSEVYHAYVADRSMKIEFSEGEATHVLHPHNDALVIT 62

Query: 86  LMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLKPSLTPLVGFGGERVTPEGSIEF 145
           L +AN K+HRIL+DG SS D+ SLTA+KAM LG E+LK SLTPL+GFGGER+ P+G IE 
Sbjct: 63  LKIANAKVHRILVDGGSSTDISSLTAYKAMDLGEEVLKSSLTPLIGFGGERIIPKGRIEL 122

Query: 146 SVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEMKAIASTHHQLLKFPT 199
            + F     ++T++++FLVVD   +YN IL RPT+H ++AI ST+HQ +KFPT
Sbjct: 123 PITFRSEPKSITRMVDFLVVDYTSSYNTILERPTMHMLRAIPSTYHQSMKFPT 175

[Close]

BLAST of Lag0011458 vs. ExPASy TrEMBL
Match: A0A6J1DQY2 (uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022321 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.1e-46
Identity = 99/173 (57.23%), Postives = 124/173 (71.68%), Query Frame = 0


Query: 26  GPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPPLEFTEAEATSIHQPHNDALVVT 85
           GP    S RKRKA  REAR   +   +Y  ++      +EF+E EAT +  PHNDALV+T
Sbjct: 3   GPIERESERKRKAYVREARTSRKQNEVYHAYITNQQVTIEFSENEATHLLHPHNDALVIT 62

Query: 86  LMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLKPSLTPLVGFGGERVTPEGSIEF 145
           L +ANVK+HRIL+DG SSAD++S TA+KAM LG ++LK S  PLVGFGGERV  EG IE 
Sbjct: 63  LKIANVKVHRILVDGGSSADIISWTAYKAMDLGEKVLKSSPAPLVGFGGERVILEGRIEL 122

Query: 146 SVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEMKAIASTHHQLLKFPT 199
            V FG G  +VTK+++FLVV+   +YNAILGRPT+H +KAI ST+HQ  KFPT
Sbjct: 123 PVTFGSGPKSVTKMVDFLVVNYTSSYNAILGRPTMHMLKAIPSTYHQSXKFPT 175

[Close]

BLAST of Lag0011458 vs. ExPASy TrEMBL
Match: A0A6J1DV51 (uncharacterized protein LOC111024662 OS=Momordica charantia OX=3673 GN=LOC111024662 PE=4 SV=1)

HSP 1 Score: 196.1 bits (497), Expect = 1.4e-46
Identity = 97/181 (53.59%), Postives = 125/181 (69.06%), Query Frame = 0


Query: 18  REIRTIFGGPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPPLEFTEAEATSIHQP 77
           +EI+TIFGGP      +KRKA  +EAR  P Y  +Y          ++F+E E T +  P
Sbjct: 65  KEIQTIFGGPTERELGKKRKASMQEARASPGYCKVYHASFTGQPSKIKFSEDETTRLFHP 124

Query: 78  HNDALVVTLMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLKPSLTPLVGFGGERV 137
           HNDALV+TL + N K+HRIL+DG SS  ++SLTA+KAM LG + LK +L PLVGFGGERV
Sbjct: 125 HNDALVITLKITNTKVHRILVDGGSSTGIISLTAYKAMDLGEKALKSNLAPLVGFGGERV 184

Query: 138 TPEGSIEFSVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEMKAIASTHHQLLKFP 197
             +  I+  V FG+G   +TKI+ FLVVD   +YNAILGRPT+H +KAI ST+H+ LKFP
Sbjct: 185 IQKCRIKLPVTFGNGPRNITKIVEFLVVDYSSSYNAILGRPTIHTLKAIPSTYHKSLKFP 244

Query: 198 T 199
           T
Sbjct: 245 T 245

[Close]

BLAST of Lag0011458 vs. ExPASy TrEMBL
Match: A0A6J1D8C9 (uncharacterized protein LOC111018300 OS=Momordica charantia OX=3673 GN=LOC111018300 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 5.4e-46
Identity = 104/195 (53.33%), Postives = 127/195 (65.13%), Query Frame = 0


Query: 4   GEVDQRWPRQTRTPREIRTIFGGPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPP 63
           GE D + P      REIRTI GGP      RKRKA  RE R       IY   +AK    
Sbjct: 78  GENDSKSP-----AREIRTIMGGPMEREFGRKRKASIRETRTSQVQHEIYHTFVAKQPAK 137

Query: 64  LEFTEAEATSIHQPHNDALVVTLMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLK 123
           +EF+E EAT +  PHND LV+TL +AN K+HRIL+DG SSAD++SLTA+KAM LG    K
Sbjct: 138 IEFSEDEATHLLHPHNDVLVITLKIANAKVHRILVDGGSSADIISLTAYKAMDLGERGRK 197

Query: 124 PSLTPLVGFGGERVTPEGSIEFSVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEM 183
            S   LV F GERV PEG  E +V FG G  ++T I++FLV+D   +YNAILGRPT+H +
Sbjct: 198 SSPASLVRFRGERVIPEGRTELTVTFGSGPKSITTIMDFLVIDYASSYNAILGRPTIHML 257

Query: 184 KAIASTHHQLLKFPT 199
           KAI ST+HQ + FPT
Sbjct: 258 KAIPSTYHQSINFPT 267

[Close]

BLAST of Lag0011458 vs. ExPASy TrEMBL
Match: A0A6J1DXV4 (uncharacterized protein LOC111025147 OS=Momordica charantia OX=3673 GN=LOC111025147 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 5.4e-46
Identity = 98/174 (56.32%), Postives = 123/174 (70.69%), Query Frame = 0


Query: 25  GGPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPPLEFTEAEATSIHQPHNDALVV 84
           GGP    S RKRKA  REAR       +Y  ++A     +EF+E EAT +  PHNDALV+
Sbjct: 2   GGPIKRESGRKRKADVREARASLRQNKVYHAYIADRSVTIEFSEDEATHLLHPHNDALVI 61

Query: 85  TLMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLKPSLTPLVGFGGERVTPEGSIE 144
           TL +ANVK+HRIL+DG SSAD++S T +K M LG ++LK S  PL+GFG ERV PEG IE
Sbjct: 62  TLKIANVKVHRILVDGGSSADIISWTTYKVMDLGEKVLKSSPAPLIGFGRERVIPEGRIE 121

Query: 145 FSVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEMKAIASTHHQLLKFPT 199
             V FG G  +VTK+++FLVVD   +YNAILGR T+H +KAI ST+HQ +KFPT
Sbjct: 122 LHVTFGSGPKSVTKMMDFLVVDYTSSYNAILGRSTMHMLKAIPSTYHQSMKFPT 175

[Close]

BLAST of Lag0011458 vs. ExPASy TrEMBL
Match: A0A6J1CZ14 (uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015901 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.0e-44
Identity = 93/173 (53.76%), Postives = 122/173 (70.52%), Query Frame = 0


Query: 26  GPAGGGSSRKRKAIAREARFEPEYRGIYSVHLAKTHPPLEFTEAEATSIHQPHNDALVVT 85
           GP    S RKRKA  REAR       +Y  ++A     +EF+E EAT +  PHNDALV+T
Sbjct: 3   GPIERESGRKRKANVREARASLGQSEVYHAYVADRSMKIEFSEGEATHVLHPHNDALVIT 62

Query: 86  LMVANVKIHRILIDGESSADVLSLTAFKAMQLGRELLKPSLTPLVGFGGERVTPEGSIEF 145
           L +AN K+HRIL+DG SS D+ SLTA+KAM LG E+LK SLTPL+GFGGER+ P+G IE 
Sbjct: 63  LKIANAKVHRILVDGGSSTDISSLTAYKAMDLGEEVLKSSLTPLIGFGGERIIPKGRIEL 122

Query: 146 SVIFGDGQNTVTKIINFLVVDCMPAYNAILGRPTLHEMKAIASTHHQLLKFPT 199
            + F     ++T++++FLVVD   +YN IL RPT+H ++AI ST+HQ +KFPT
Sbjct: 123 PITFRSEPKSITRMVDFLVVDYTSSYNTILERPTMHMLRAIPSTYHQSMKFPT 175

The following BLAST results are available for this feature:

BLAST of Lag0011458 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155186.1	2.3e-46	57.23	uncharacterized protein LOC111022321 [Momordica charantia]	[more]
XP_022158093.1	3.0e-46	53.59	uncharacterized protein LOC111024662 [Momordica charantia]	[more]
XP_022158687.1	1.1e-45	56.32	uncharacterized protein LOC111025147 [Momordica charantia]	[more]
XP_022150028.1	1.1e-45	53.33	uncharacterized protein LOC111018300 [Momordica charantia]	[more]
XP_022146774.1	2.1e-44	53.76	uncharacterized protein LOC111015901 [Momordica charantia]	[more]

BLAST of Lag0011458 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0011458 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DQY2	1.1e-46	57.23	uncharacterized protein LOC111022321 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DV51	1.4e-46	53.59	uncharacterized protein LOC111024662 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A6J1D8C9	5.4e-46	53.33	uncharacterized protein LOC111018300 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A6J1DXV4	5.4e-46	56.32	uncharacterized protein LOC111025147 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1CZ14	1.0e-44	53.76	uncharacterized protein LOC111015901 OS=Momordica charantia OX=3673 GN=LOC111015...	[more]

BLAST of Lag0011458 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021109	Aspartic peptidase domain superfamily	GENE3D	2.40.70.10	Acid Proteases	coord: 66..198 e-value: 4.2E-8 score: 34.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	CDD	cd00303	retropepsin_like	coord: 84..181 e-value: 5.51313E-14 score: 62.7392

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011458.1	Lag0011458.1	mRNA