Lag0011455 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011455
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
Descriptionultraviolet-B receptor UVR8 isoform X1
Locationchr1: 25176066 .. 25176887 (-)
RNA-Seq ExpressionLag0011455
SyntenyLag0011455
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACTAAACGGATCCCTACAGGTTGACACCACGGTCACTTTCACTGTCCATGGTCTTTGCTCGAGAGAGCGGAAAACAGCAAGACTCCTAGACTTAGAATTAACTATTAATGGATATTGTTTAACTTGACATGATCTTTATTTATTTTTTGAACATCAATTTTAGATTGGCGGTATTTTAGTCTATTGTGTATTTTCAATATTGGTTCTATATTTAGCATTTGGTCCTTTATGAAATCGAAATCTTGTTTCACCTATTTTTTCAAAACCGTCTATTAAATATCCAGATTATCTAGTTGCGCTTCAGGCCATTTTCAGGAATTACCCAATCATTTTGTAATTTAACCCAAAAAAAAAAAAAGAAAAAAGAAAAATTTATTGTTTCTCAACTGTCGAGACATTACACAATTTTCCTTGGTTCTTTAATTGCTAACTAACCGACTCTGGCTTCTGCTTCTAGCGGAAGACGTAGCACAATTCCTTACCACCGATCAAAACCGATTTCTTAAGTCCCAATCTTCTTCACCGCAGAGGCTCAATCTGAAATTCCCGAAATCCGAAAGCAAAATCAGAAAAGATCCATATGACTACCGGGCAGTTCATTTTGATCTTCACATTCAGCACAAATTGCTCACAGAAATCGATATAAGCAAAGTTATGCTTAGCAGAAGGCATTTAACGGAGTTCATAATCGGTTTCAATTCGGAAATCTGGAGAAGAGGAAGTCGATGGTTGTCGAGCAATTCAGGGAAGAGGTTTATAGCGGTTTGGGGAAATGGCGATTTCGGGAGGCTGGGGCTTGGAAAATGGTTCTTTTGA

mRNA sequence

ATGATCACTAAACGGATCCCTACAGCGGAAGACGTAGCACAATTCCTTACCACCGATCAAAACCGATTTCTTAAGTCCCAATCTTCTTCACCGCAGAGGCTCAATCTGAAATTCCCGAAATCCGAAAGCAAAATCAGAAAAGATCCATATGACTACCGGGCAGTTCATTTTGATCTTCACATTCAGCACAAATTGCTCACAGAAATCGATATAAGCAAAGTTATGCTTAGCAGAAGGCATTTAACGGAGTTCATAATCGGTTTCAATTCGGAAATCTGGAGAAGAGGAAGTCGATGGTTGTCGAGCAATTCAGGGAAGAGGTTTATAGCGGTTTGGGGAAATGGCGATTTCGGGAGGCTGGGGCTTGGAAAATGGTTCTTTTGA

Coding sequence (CDS)

ATGATCACTAAACGGATCCCTACAGCGGAAGACGTAGCACAATTCCTTACCACCGATCAAAACCGATTTCTTAAGTCCCAATCTTCTTCACCGCAGAGGCTCAATCTGAAATTCCCGAAATCCGAAAGCAAAATCAGAAAAGATCCATATGACTACCGGGCAGTTCATTTTGATCTTCACATTCAGCACAAATTGCTCACAGAAATCGATATAAGCAAAGTTATGCTTAGCAGAAGGCATTTAACGGAGTTCATAATCGGTTTCAATTCGGAAATCTGGAGAAGAGGAAGTCGATGGTTGTCGAGCAATTCAGGGAAGAGGTTTATAGCGGTTTGGGGAAATGGCGATTTCGGGAGGCTGGGGCTTGGAAAATGGTTCTTTTGA

Protein sequence

MITKRIPTAEDVAQFLTTDQNRFLKSQSSSPQRLNLKFPKSESKIRKDPYDYRAVHFDLHIQHKLLTEIDISKVMLSRRHLTEFIIGFNSEIWRRGSRWLSSNSGKRFIAVWGNGDFGRLGLGKWFF
Homology
[Close]
BLAST of Lag0011455 vs. NCBI nr
Match: XP_022154913.1 (ultraviolet-B receptor UVR8 isoform X2 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 42/49 (85.71%), Postives = 42/49 (85.71%), Query Frame = 0 

Query: 75  MLSRRHLTEFIIGFNSEIWRRGSRWLSSNSGKRFIAVWGNGDFGRLGLG 124
           MLSRR   EFIIGFNSE WRR SR LSSNSGKRF AVWGNGDFGRLGLG
Sbjct: 1   MLSRRRFAEFIIGFNSETWRRRSRRLSSNSGKRFAAVWGNGDFGRLGLG 49

[Close]
BLAST of Lag0011455 vs. NCBI nr
Match: XP_022154912.1 (ultraviolet-B receptor UVR8 isoform X1 [Momordica charantia])

HSP 1 Score: 86.7 bits (213), Expect = 1.6e-13
Identity = 42/49 (85.71%), Postives = 42/49 (85.71%), Query Frame = 0 

Query: 75  MLSRRHLTEFIIGFNSEIWRRGSRWLSSNSGKRFIAVWGNGDFGRLGLG 124
           MLSRR   EFIIGFNSE WRR SR LSSNSGKRF AVWGNGDFGRLGLG
Sbjct: 1   MLSRRRFAEFIIGFNSETWRRRSRRLSSNSGKRFAAVWGNGDFGRLGLG 49

[Close]
BLAST of Lag0011455 vs. NCBI nr
Match: XP_038883568.1 (ultraviolet-B receptor UVR8 isoform X2 [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-12
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 75  MLSRRHLTEFIIGFNSEIW-RRGSRWLSSNSGKRFIAVWGNGDFGRLGLG 124
           ML+RR LTEFI GFNSE W RR +RWLSSNSGK F AVWGNGDFGRLGLG
Sbjct: 1   MLTRRRLTEFIFGFNSETWNRRITRWLSSNSGKIFAAVWGNGDFGRLGLG 50

[Close]
BLAST of Lag0011455 vs. NCBI nr
Match: XP_038883567.1 (ultraviolet-B receptor UVR8 isoform X1 [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-12
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 75  MLSRRHLTEFIIGFNSEIW-RRGSRWLSSNSGKRFIAVWGNGDFGRLGLG 124
           ML+RR LTEFI GFNSE W RR +RWLSSNSGK F AVWGNGDFGRLGLG
Sbjct: 1   MLTRRRLTEFIFGFNSETWNRRITRWLSSNSGKIFAAVWGNGDFGRLGLG 50

[Close]
BLAST of Lag0011455 vs. NCBI nr
Match: XP_038883569.1 (ultraviolet-B receptor UVR8 isoform X3 [Benincasa hispida])

HSP 1 Score: 83.2 bits (204), Expect = 1.8e-12
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 0 

Query: 75  MLSRRHLTEFIIGFNSEIW-RRGSRWLSSNSGKRFIAVWGNGDFGRLGLG 124
           ML+RR LTEFI GFNSE W RR +RWLSSNSGK F AVWGNGDFGRLGLG
Sbjct: 1   MLTRRRLTEFIFGFNSETWNRRITRWLSSNSGKIFAAVWGNGDFGRLGLG 50

The following BLAST results are available for this feature:
BLAST of Lag0011455 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022154913.11.6e-1385.71ultraviolet-B receptor UVR8 isoform X2 [Momordica charantia][more]
XP_022154912.11.6e-1385.71ultraviolet-B receptor UVR8 isoform X1 [Momordica charantia][more]
XP_038883568.11.8e-1282.00ultraviolet-B receptor UVR8 isoform X2 [Benincasa hispida][more]
XP_038883567.11.8e-1282.00ultraviolet-B receptor UVR8 isoform X1 [Benincasa hispida][more]
XP_038883569.11.8e-1282.00ultraviolet-B receptor UVR8 isoform X3 [Benincasa hispida][more]
BLAST of Lag0011455 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011455.1Lag0011455.1mRNA