Lag0011439 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011439
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 24780696 .. 24783148 (-)
RNA-Seq ExpressionLag0011439
SyntenyLag0011439
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTGAGAGAGCAGGATTTTTGCGGGAGCATTTCACAGAGCAAAATTTTGAGCTCCCAGGATTTGTATGATTTTATTTTCGTTGATTTGATTTTAATTGCGTTAGGTTAGATTTGTTTTGCGAGATTTATTAGATTTTGTCTTTAAATATTTGATTAGATCTTATCTATTTGTTTTGAATTTGATTTGATTTTCGGGTTATTTATTTAAATTATCTTTCAATTATCTTTAATTAGTTAGATTTTATTAGATTTTATCTAGATTTATTTTCAGTTATTTGAATTCTAGTTTTAATTAATAGAGATTTTCTCTAATTTATTCGGCTTCTTTTGAAAATAAAGATTGGATGATTGGTTAAATTTAATTTGAATTTAAGAAAAAATCTTTGATTTTTCTTGCTTTGAAATTCGAATTCCGTATCTAAGATTCTTCAGGTTCAGCAGATTGTTGCGGCAAAGATATGGCGAAGCAAAATCATCTAATTACAAGGGTTTCGTTGGAAATTTATTATTTTTACCATTGAGATTTTCTTTGAATTTTCGTAGGTAAATTGCATGCATCATCTGATGACACCACGTGTCGCAGAGTAATCATTCGACGGCTTCAATGATGGACAGCACACCAATTTTTACCATGGGCGTTTGGAATCCACGATTTTACTGTTGTTGGTTTCAAATTTCAGGTTTGCATTTTTAAATTAAACGGTAATATAATTAATGTGGAAAATCTTTTAGTTAGGATTTGAATTTGCTGGAGCCTTATTTATTCACAAACGCTGGTAAGCTTCTCCCACTTCGTCTTCTTAATCCCATTTTTGCCATCTATATTCTTTTTTTCTCTGTCAAAACCGTTCATACCTCCATCGCTAAGACTAGAGCTAGGAAAGAAAGAGAGAGTGAAGAAGAGGAGGTATCGGTCACACCGGAAGTGAAAAAGGGAAAACCAAAAGAAAAGAACGCCGGAGGAAAAGGAAGCAAAGAAAAGGAGAAGGCAGCAAAGGCTGCAGAACAGAGAAGTTCAGAGGTGCAGACGTTGTTGCCACTACTGCGGAAGAAGGAATTATTCAAGAACTGAAGTACAAAACCCAGATACGGTTCAAGAAAAGATTGCTGAGAAAATCAAGAAACAGAGGTTGAAGAGCAGGCTGAAGGTGAGCCTAACAAGGAGAAAACACCGGAGCTGGCGCAGGAGGCTCATGTTGAAGTCATTATACCTGAACCGCCCAGACGCCGCCGCATCAAGAGGAAGGCGGGTCGCGTGAGGGTGATTCGGAACACTCCATCACCTCCGACGTCGGACTCTGAGGAAGAAAAAGGGAAGCTGAGAATAAGGAAAAAGAAAAGAGGCAAGAAAGGCAGAAGAAGAGCGTTTGCACAAACAGAGAGAAAGCAAGGGCAAAGGAATTGCCGAAGCATCGGGAGAAATTGAGGAGCCGAGGGCACCATTCATTCGCTTCGTCAACGATCTTGCTCGAGCAAAATACCAGGAGGTGCTGAAACGGGACTTCTTGTTCGAACGAGGATTTGGCAGTGATTTGCCCAGGTTCTTGGAGTTGGAATAGTGAACCCGGATGGAGGCAATTTTGTGCGAAACCAGAACCTGTCAATTCCAACATTGTTCGGAATTTTATGCCAATCTTGACGTTAAGAATGATTTTGAGGTTATCGTTCGAGGAGTGCCTGTACAGTGGAGTCCTGAGGCCATTAATGAATTGTTCGATCTCCAGGATTTTCCGCATGCCGTTTTTAATGAGATGGTGGTTGCACCATCTAGTGATCAACTGTGCGGCTGTCCGGGAGGTAGGCATTGAGGGGGCTCAATGGAGGGTGTCGCAGACGCAGAAGCATACGTTTCAAGCTGCTTATTTGAAGAGTGAAGCCAACACTTGGATGGGTTTCATCAGGCTACGCTTGCTGCCGACAACACACGACTCCACAGTATCTCGGGACAGGGTATTGCTTGCTTTGCCATTCTTCGCTCGATGAGTATTATGTAGGAAAAATTATTTCTTCTGAGATTGTTGATTGCTGGAAAAAGAAGGTGGGGAAGCTGTTCTTTCCAAACACTATCACAATGTTATGCAGCAGGGCAGGAGTGCCACGGTTCCAGAAGATATGATCATGACTGATAAGGGAATCATTGACACACCTAATCTGGCGCGGCTTCAGCGTACGCAAGAGGCTCGCCAGGGAGGCTTGTGTATGGCGTTAATCAGATCCTAGAGCATCTGACAGTGTTGACCAGTAGGTTAGAATTTGCTGAAAGGCAAGCTCAGACCTATTGGACTTATGCTAAAAGGAGAGATGATGCGCTCAAGGGGGCCTTGCAAACCAATTTCTCAAGACCATATCAGGCCTTTCCAGTGTTTCCCGATGATTTGTTTAATCTTTGGATACCACCCCGCCTGTTGAAGAGAAGAGGATGTGATGAAGAGCAGGGTCAGGAAGATTGA

mRNA sequence

ATGATTGAGAGAGCAGGATTTTTGCGGGAGCATTTCACAGAGCAAAATTTTGAGCTCCCAGGATTTGATTTGAATTTGCTGGAGCCTTATTTATTCACAAACGCTGGTAAGCTTCTCCCACTTCGTCTTCTTAATCCCATTTTTGCCATCTATATTCTTTTTTTCTCTGTCAAAACCGTTCATACCTCCATCGCTAAGACTAGAGCTAGGAAAGAAAGAGAGAGTGAAGAAGAGGAGGTATCGGTCACACCGGAAGTGAAAAAGGGAAAACCAAAAGAAAAGAACGCCGGAGGAAAAGGAAGCAAAGAAAAGGAGAAGGCAGCAAAGGCTGCAGAACAGAGAAGTTCAGAGGCTGAAGGTGAGCCTAACAAGGAGAAAACACCGGAGCTGGCGCAGGAGGCTCATGTTGAAGTCATTATACCTGAACCGCCCAGACGCCGCCGCATCAAGAGGAAGGCGGGTCGCGTGAGGAGAGAAAGCAAGGGCAAAGGAATTGCCGAAGCATCGGGAGAAATTGAGGAGCCGAGGGCACCATTCATTCGCTTCGTCAACGATCTTGCTCGAGCAAAATACCAGGAGGTGCTGAAACGGGACTTCTTGTTCGAACGAGGATTTGGCAGTGATTTGCCCAGGATTTTCCGCATGCCGTTTTTAATGAGATGGTGGTTGCACCATCTAGTGATCAACTGTGCGGCTGTCCGGGAGGTAGGCATTGAGGGGGCTCAATGGAGGGTGTCGCAGACGCAGAAGCATACGTTTCAAGCTGCTTATTTGAAGAGTGAAGCCAACACTTGGATGGGTTTCATCAGGCTACGCTTGCTGCCGACAACACACGACTCCACAGTATCTCGGGACAGGCAGGGCAGGAGTGCCACGGTTCCAGAAGATATGATCATGACTGATAAGGGAATCATTGACACACCTAATCTGGCGCGGCTTCAGCTGTTGACCAGTAGGTTAGAATTTGCTGAAAGGCAAGCTCAGACCTATTGGACTTATGCTAAAAGGAGAGATGATGCGCTCAAGGGGGCCTTGCAAACCAATTTCTCAAGACCATATCAGGCCTTTCCAGTGTTTCCCGATGATTTGTTTAATCTTTGGATACCACCCCGCCTGTTGAAGAGAAGAGGATGTGATGAAGAGCAGGGTCAGGAAGATTGA

Coding sequence (CDS)

ATGATTGAGAGAGCAGGATTTTTGCGGGAGCATTTCACAGAGCAAAATTTTGAGCTCCCAGGATTTGATTTGAATTTGCTGGAGCCTTATTTATTCACAAACGCTGGTAAGCTTCTCCCACTTCGTCTTCTTAATCCCATTTTTGCCATCTATATTCTTTTTTTCTCTGTCAAAACCGTTCATACCTCCATCGCTAAGACTAGAGCTAGGAAAGAAAGAGAGAGTGAAGAAGAGGAGGTATCGGTCACACCGGAAGTGAAAAAGGGAAAACCAAAAGAAAAGAACGCCGGAGGAAAAGGAAGCAAAGAAAAGGAGAAGGCAGCAAAGGCTGCAGAACAGAGAAGTTCAGAGGCTGAAGGTGAGCCTAACAAGGAGAAAACACCGGAGCTGGCGCAGGAGGCTCATGTTGAAGTCATTATACCTGAACCGCCCAGACGCCGCCGCATCAAGAGGAAGGCGGGTCGCGTGAGGAGAGAAAGCAAGGGCAAAGGAATTGCCGAAGCATCGGGAGAAATTGAGGAGCCGAGGGCACCATTCATTCGCTTCGTCAACGATCTTGCTCGAGCAAAATACCAGGAGGTGCTGAAACGGGACTTCTTGTTCGAACGAGGATTTGGCAGTGATTTGCCCAGGATTTTCCGCATGCCGTTTTTAATGAGATGGTGGTTGCACCATCTAGTGATCAACTGTGCGGCTGTCCGGGAGGTAGGCATTGAGGGGGCTCAATGGAGGGTGTCGCAGACGCAGAAGCATACGTTTCAAGCTGCTTATTTGAAGAGTGAAGCCAACACTTGGATGGGTTTCATCAGGCTACGCTTGCTGCCGACAACACACGACTCCACAGTATCTCGGGACAGGCAGGGCAGGAGTGCCACGGTTCCAGAAGATATGATCATGACTGATAAGGGAATCATTGACACACCTAATCTGGCGCGGCTTCAGCTGTTGACCAGTAGGTTAGAATTTGCTGAAAGGCAAGCTCAGACCTATTGGACTTATGCTAAAAGGAGAGATGATGCGCTCAAGGGGGCCTTGCAAACCAATTTCTCAAGACCATATCAGGCCTTTCCAGTGTTTCCCGATGATTTGTTTAATCTTTGGATACCACCCCGCCTGTTGAAGAGAAGAGGATGTGATGAAGAGCAGGGTCAGGAAGATTGA

Protein sequence

MIERAGFLREHFTEQNFELPGFDLNLLEPYLFTNAGKLLPLRLLNPIFAIYILFFSVKTVHTSIAKTRARKERESEEEEVSVTPEVKKGKPKEKNAGGKGSKEKEKAAKAAEQRSSEAEGEPNKEKTPELAQEAHVEVIIPEPPRRRRIKRKAGRVRRESKGKGIAEASGEIEEPRAPFIRFVNDLARAKYQEVLKRDFLFERGFGSDLPRIFRMPFLMRWWLHHLVINCAAVREVGIEGAQWRVSQTQKHTFQAAYLKSEANTWMGFIRLRLLPTTHDSTVSRDRQGRSATVPEDMIMTDKGIIDTPNLARLQLLTSRLEFAERQAQTYWTYAKRRDDALKGALQTNFSRPYQAFPVFPDDLFNLWIPPRLLKRRGCDEEQGQED
Homology
[Close]
BLAST of Lag0011439 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 65.1 bits (157), Expect = 1.5e-06
Identity = 56/207 (27.05%), Postives = 74/207 (35.75%), Query Frame = 0 

Query: 236 VGIEGAQWRVSQTQKHTFQAAYLKSEANTWMGFIRLRLLPTTHDSTVSRDR--------Q 295
           V   GA+W VS    +T   + L   A  W  F++ RLLPTTH   VS+DR         
Sbjct: 78  VAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLN 137

Query: 296 GRSATV-----------------------------------PEDMIMTDKGIIDTPNLAR 355
           G+S  V                                     +  + + G ID   +AR
Sbjct: 138 GKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNAPFLVNEEKLHNTGEIDAIAVAR 197

Query: 356 ---------------------------------LQLLTSRL---EFAERQAQTYWTYAKR 364
                                            L+ L  RL   E   +Q Q +W Y+K 
Sbjct: 198 ITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKALEQRLSQQEHTHKQQQQFWAYSKE 257

[Close]
BLAST of Lag0011439 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 62.0 bits (149), Expect = 1.3e-05
Identity = 54/220 (24.55%), Postives = 75/220 (34.09%), Query Frame = 0 

Query: 236 VGIEGAQWRVSQTQKHTFQAAYLKSEANTWMGFIRLRLLPTTHDSTVSRD---------- 295
           V   GA+W VS    +T   + L   A  W  F++ RLLPTTH  TVS+D          
Sbjct: 148 VAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLI 207

Query: 296 -----------------------------------RQGRSATVPEDMIMTDKGIIDTPNL 355
                                              R  R+  +  +  + + G ID   +
Sbjct: 208 GKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAV 267

Query: 356 ARL-------------------------------QL----------------LTSRLEFA 364
           AR+                               QL                + S L+  
Sbjct: 268 ARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKALEQRLSQQEVQQYHMMSLLQHT 327

[Close]
BLAST of Lag0011439 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 57.0 bits (136), Expect = 4.2e-04
Identity = 31/89 (34.83%), Postives = 45/89 (50.56%), Query Frame = 0 

Query: 277 THDSTVSRDRQGRSATVPEDMIMTDKGIIDTPNLARLQL--LTSRLEFAERQAQTYWTYA 336
           T   + SR     S+    D++   K +    +   +Q   + S L+   +Q Q +W Y+
Sbjct: 150 TQQPSTSRPTVASSSRANGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYS 209

Query: 337 KRRDDALKGALQTNFSRPYQAFPVFPDDL 364
           K RD ALK ALQ NF+RP   FP FP +L
Sbjct: 210 KERDTALKKALQNNFTRPIPTFPTFPQEL 238

[Close]
BLAST of Lag0011439 vs. NCBI nr
Match: PON73690.1 (LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_055780 [Parasponia andersonii])

HSP 1 Score: 55.8 bits (133), Expect = 9.3e-04
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 325 RQAQTYWTYAKRRDDALKGALQTNFSRPYQAFPVFPDDLF 365
           +Q Q +W Y+K RD ALK ALQ NF+RP   FP FP +LF
Sbjct: 8   KQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQELF 47

[Close]
BLAST of Lag0011439 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 7.4e-07
Identity = 56/207 (27.05%), Postives = 74/207 (35.75%), Query Frame = 0 

Query: 236 VGIEGAQWRVSQTQKHTFQAAYLKSEANTWMGFIRLRLLPTTHDSTVSRDR--------Q 295
           V   GA+W VS    +T   + L   A  W  F++ RLLPTTH   VS+DR         
Sbjct: 78  VAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLN 137

Query: 296 GRSATV-----------------------------------PEDMIMTDKGIIDTPNLAR 355
           G+S  V                                     +  + + G ID   +AR
Sbjct: 138 GKSINVGRMIHSEIRACAAQKTGALFFPSLITRLCRNAPFLVNEEKLHNTGEIDAIAVAR 197

Query: 356 ---------------------------------LQLLTSRL---EFAERQAQTYWTYAKR 364
                                            L+ L  RL   E   +Q Q +W Y+K 
Sbjct: 198 ITQEGPTESTQQPSSSRPAAASSSRTNGDVLQQLKALEQRLSQQEHTHKQQQQFWAYSKE 257

[Close]
BLAST of Lag0011439 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 6.3e-06
Identity = 54/220 (24.55%), Postives = 75/220 (34.09%), Query Frame = 0 

Query: 236 VGIEGAQWRVSQTQKHTFQAAYLKSEANTWMGFIRLRLLPTTHDSTVSRD---------- 295
           V   GA+W VS    +T   + L   A  W  F++ RLLPTTH  TVS+D          
Sbjct: 148 VAAAGAEWNVSAQGAYTCIRSALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLI 207

Query: 296 -----------------------------------RQGRSATVPEDMIMTDKGIIDTPNL 355
                                              R  R+  +  +  + + G ID   +
Sbjct: 208 GKSINVGRMIHSEIRACAARKTGALFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAV 267

Query: 356 ARL-------------------------------QL----------------LTSRLEFA 364
           AR+                               QL                + S L+  
Sbjct: 268 ARIAQEGPTESTQQPSSSRPATASSNRTNGDILQQLKALEQRLSQQEVQQYHMMSLLQHT 327

[Close]
BLAST of Lag0011439 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.0e-04
Identity = 31/89 (34.83%), Postives = 45/89 (50.56%), Query Frame = 0 

Query: 277 THDSTVSRDRQGRSATVPEDMIMTDKGIIDTPNLARLQL--LTSRLEFAERQAQTYWTYA 336
           T   + SR     S+    D++   K +    +   +Q   + S L+   +Q Q +W Y+
Sbjct: 150 TQQPSTSRPTVASSSRANGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYS 209

Query: 337 KRRDDALKGALQTNFSRPYQAFPVFPDDL 364
           K RD ALK ALQ NF+RP   FP FP +L
Sbjct: 210 KERDTALKKALQNNFTRPIPTFPTFPQEL 238

[Close]
BLAST of Lag0011439 vs. ExPASy TrEMBL
Match: A0A2P5DK88 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_055780 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.5e-04
Identity = 23/40 (57.50%), Postives = 28/40 (70.00%), Query Frame = 0 

Query: 325 RQAQTYWTYAKRRDDALKGALQTNFSRPYQAFPVFPDDLF 365
           +Q Q +W Y+K RD ALK ALQ NF+RP   FP FP +LF
Sbjct: 8   KQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQELF 47

[Close]
BLAST of Lag0011439 vs. ExPASy TrEMBL
Match: A0A2P5ELY2 (Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_176260 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.9e-04
Identity = 24/46 (52.17%), Postives = 30/46 (65.22%), Query Frame = 0 

Query: 318 SRLEFAERQAQTYWTYAKRRDDALKGALQTNFSRPYQAFPVFPDDL 364
           S L+   +Q Q +W Y+K RD ALK ALQ NF+RP   FP FP +L
Sbjct: 2   SLLQQTHKQQQQFWAYSKERDTALKKALQNNFTRPIPTFPTFPQEL 47

The following BLAST results are available for this feature:
BLAST of Lag0011439 vs. NCBI nr
Match NameE-valueIdentityDescription
PON78020.11.5e-0627.05hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
PON46472.11.3e-0524.55hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON59596.14.2e-0434.83hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
PON73690.19.3e-0457.50LOW QUALITY PROTEIN: hypothetical protein PanWU01x14_055780 [Parasponia anderson... [more]
BLAST of Lag0011439 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0011439 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2P5DXM37.4e-0727.05Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... [more]
A0A2P5BCG46.3e-0624.55Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5CEY22.0e-0434.83Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE... [more]
A0A2P5DK884.5e-0457.50Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_055780 PE... [more]
A0A2P5ELY25.9e-0452.17Uncharacterized protein (Fragment) OS=Trema orientale OX=63057 GN=TorRG33x02_176... [more]
BLAST of Lag0011439 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 101..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..132

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011439.1Lag0011439.1mRNA