Lag0011432 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011432
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Locationchr1: 24590001 .. 24591997 (-)
RNA-Seq ExpressionLag0011432
SyntenyLag0011432
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGAACTCAAGTGAAAGGATTCCACGTTTCAGAAGATTACAAGAACTCTATGAGGTAACTGAAAATCATGATAACCTTACTCTCTTTTGTCTTTTTGCCAACAGTGAGCCCATAAACTTCCAAGAAACAGTGACAAACAAAAATTGGAAAAGCGCTATGGATGAAGAGATCAAGGCAATCAAGAAGAATGACACATGGGAGCTAGTCTCACTTCCAAAAGGGCACAAGGCGATCAAAGTGAAGTGGGTTTACAAAACCAAAAGGAAACCGAAAAGAAAACTTCATAAGATCAAGAGATTTGATGGGAGTAACAAAATCAAGTTTAAGAGGGGGTGTTGAAATATAAACTTGATTTTGGATAATTAGAATTTGGGCCTAGCCCAAATAAAAGCCCAAATTCTAGAAATGTCTTGAGAAGAGGAAAAATCTAGAGAAATACCTTAGGAAGATTTTTGGAGTATGAGGTAGAATTATCTAGAATATTAGAGAAAATTATGTATTCTAGAGAATCATTTGTAGCCACAAGATTATAGATGAGTGTTGGCAAAATCCTAACCACAAATTGAGGAGGTGGAAACTAGTATAAATAGGAGTGGTGTCTTAAAGTTTTTGAATCAAGTCAATCAAGCCAAAAAGCTAGAATTGAGTAACAACACAAGTAGCCTCTTTCTCATAGCCTCCTTCTCAAAAATCCATCTTTTAAGTTTACCCTCCAATCTCCAAAAAGTTTCTTTCCAACAAATCTATCGTCTTCTTCGGTGGCATCTACCAGGTGGTTGTATGACGACGATGAAGGTTTCTAGGTTCTCTATCATGAGATGACCTTGGAAAGAAAGGCGGATTTGTTCTGGCATAGGGGTGCGGCTGTGGCTTGTCAAGTATAAGGTTTCGAGTTCTTGCGATTAGTGTGGCTTTTCTATTCCGGCGAGAGCGGCAGTTGCGGGCTCCTTTTGCGATTGGTGTTGGTTCTGTCCAACAAGAGGTTGTACAGGCGGGTTGTTCTTCTCGATTTGGGTGCTCTTCACGATTTGGATCCAACGTTGTGGCTCTTCACATATAAAGCGACTTTTCTATTCCGGCGAGAGTGGCGGTGATGAGGGTTTCTGGGTTCAGGCATGTGGTCCGAATGGTTTGTGTGTGCAGTTGGGTTCAGGGCTAGTTCTGGTGTGGTTGTGTTGGGGGCTGATTGCTAACTCTATTGTTTTGGTTTTGTGTTCAGTGGCGTGGTCCGGTAGGGTCTTATTTTAGCTAGATTCCACACTATGAGAGTCCTGGACAGTCACCTCAAATTGTCAGATTTAGGAAATTGATGACGGTGTGATCTTTTCTCTGGTTTGTGTTGATTTGTTGGTTGATAATGGATGCTGATAGACTGTCAGACTCGGTGGAGAAAATACTGAGAAGGAGAAGCATGTGGTTGAGTTTAGGGATGATGAATTGGCTCTCTCTAATGAACAAATGCAAGTTTCTTTGGTGGTTAAGTTACTGACTGACAAATTGGTGAATGTATAGTCATTCAAGACTTGGATGCCTCATATATGGAATGTGGCAGGACCTGTTGCCATTACCATTATGGGACGAAACATTTTTTTATGTGAGTTTCAAAGTGTGAGGGAGAAGAAGTGGGTGAAAGATAATCTAGCTCCATGGTCGTTTTTTGACACTGCCCTTTTGCTATTGGTGGAGCCGCGGGGAAACACAAGTGTTCAAGATCACATAAGTGTTCAAGATCTCCCCTTTTGATTGTCTCCGTTTTGGGTTAATTTTCACAAGCTTCCTCTTGTAAGGTTCACAAAGACAAAGGCGAAGGTCCTAGGTGAGATGATGGGTGTATTTGATTGGGCATATCTCACAGGTGAAGGGAAATTATGGGGGAAGCCACTGCGAGTTTGGATCTTTGTGGATGTGACTCAACGCCTCCTGAGGGATGTTATGATTGACCGGGTTCAATGGCAGAGGAGAGATAGGTGCCGGTTTCCTATGAAAAACTCCTAG

mRNA sequence

ATGAGAACTCAAGTGAAAGGATTCCACGTTTCAGAAGATTACAAGAACTCTATGAGTGAGCCCATAAACTTCCAAGAAACAGTGACAAACAAAAATTGGAAAAGCGCTATGGATGAAGAGATCAAGGCAATCAAGAAGAATGACACATGGGAGCTAGTCTCACTTCCAAAAGGGCACAAGGCGATCAAAGTGAAGTGGTGTGGCTTTTCTATTCCGGCGAGAGCGGCAGTTGCGGGCTCCTTTTGCGATTGGTGTTGGTTCTGTCCAACAAGAGGTTGTACAGGCGGGTTGTTCTTCTCGATTTGGGTGCTCTTCACGATTTGGATCCAACGTTGTGGCTCTTCACATATAAAGCGACTTTTCTATTCCGGCGAGAGTGGCGGTGATGAGGGTTTCTGGGTTCAGGCATGTGGTCCGAATGGTTTGTGTGTGCAGTTGGGTTCAGGGCTAGTTCTGGTGTGGTTGTGTTGGGGGCTGATTGCTAACTCTATTGTTTTGGTTTTGTGTTCAGTGGCGTGGTCCGGTAGGACTGTCAGACTCGGTGGAGAAAATACTGAGAAGGAGAAGCATGTGGTTGAGTTTAGGGATGATGAATTGGCTCTCTCTAATGAACAAATGCAAGTTTCTTTGGTGGTTAAGTTACTGACTGACAAATTGGTGAATCTTCCTCTTGTAAGGTTCACAAAGACAAAGGCGAAGGTCCTAGGTGAGATGATGGGTGTATTTGATTGGGCATATCTCACAGGTGAAGGGAAATTATGGGGGAAGCCACTGCGAGTTTGGATCTTTGTGGATGTGACTCAACGCCTCCTGAGGGATGTTATGATTGACCGGGTTCAATGGCAGAGGAGAGATAGGTGCCGGTTTCCTATGAAAAACTCCTAG

Coding sequence (CDS)

ATGAGAACTCAAGTGAAAGGATTCCACGTTTCAGAAGATTACAAGAACTCTATGAGTGAGCCCATAAACTTCCAAGAAACAGTGACAAACAAAAATTGGAAAAGCGCTATGGATGAAGAGATCAAGGCAATCAAGAAGAATGACACATGGGAGCTAGTCTCACTTCCAAAAGGGCACAAGGCGATCAAAGTGAAGTGGTGTGGCTTTTCTATTCCGGCGAGAGCGGCAGTTGCGGGCTCCTTTTGCGATTGGTGTTGGTTCTGTCCAACAAGAGGTTGTACAGGCGGGTTGTTCTTCTCGATTTGGGTGCTCTTCACGATTTGGATCCAACGTTGTGGCTCTTCACATATAAAGCGACTTTTCTATTCCGGCGAGAGTGGCGGTGATGAGGGTTTCTGGGTTCAGGCATGTGGTCCGAATGGTTTGTGTGTGCAGTTGGGTTCAGGGCTAGTTCTGGTGTGGTTGTGTTGGGGGCTGATTGCTAACTCTATTGTTTTGGTTTTGTGTTCAGTGGCGTGGTCCGGTAGGACTGTCAGACTCGGTGGAGAAAATACTGAGAAGGAGAAGCATGTGGTTGAGTTTAGGGATGATGAATTGGCTCTCTCTAATGAACAAATGCAAGTTTCTTTGGTGGTTAAGTTACTGACTGACAAATTGGTGAATCTTCCTCTTGTAAGGTTCACAAAGACAAAGGCGAAGGTCCTAGGTGAGATGATGGGTGTATTTGATTGGGCATATCTCACAGGTGAAGGGAAATTATGGGGGAAGCCACTGCGAGTTTGGATCTTTGTGGATGTGACTCAACGCCTCCTGAGGGATGTTATGATTGACCGGGTTCAATGGCAGAGGAGAGATAGGTGCCGGTTTCCTATGAAAAACTCCTAG

Protein sequence

MRTQVKGFHVSEDYKNSMSEPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKWCGFSIPARAAVAGSFCDWCWFCPTRGCTGGLFFSIWVLFTIWIQRCGSSHIKRLFYSGESGGDEGFWVQACGPNGLCVQLGSGLVLVWLCWGLIANSIVLVLCSVAWSGRTVRLGGENTEKEKHVVEFRDDELALSNEQMQVSLVVKLLTDKLVNLPLVRFTKTKAKVLGEMMGVFDWAYLTGEGKLWGKPLRVWIFVDVTQRLLRDVMIDRVQWQRRDRCRFPMKNS
Homology
[Close]
BLAST of Lag0011432 vs. NCBI nr
Match: KOM27543.1 (hypothetical protein LR48_Vigan437s000300 [Vigna angularis])

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-12
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 20 EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW 67
          EP+NFQE +  K+W+ AMDEEI+AIKKNDTWEL SLPKGHKAI VKW
Sbjct: 30 EPMNFQEAIEKKSWRKAMDEEIEAIKKNDTWELASLPKGHKAIGVKW 76

[Close]
BLAST of Lag0011432 vs. NCBI nr
Match: KAG7559138.1 (Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis thaliana x Arabidopsis arenosa])

HSP 1 Score: 82.4 bits (202), Expect = 7.1e-12
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 20  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW 67
           EP++FQE + NK W++AMDEEIKAIKKNDTWEL SLP GHKAI VKW
Sbjct: 836 EPMDFQEAIENKTWRNAMDEEIKAIKKNDTWELASLPNGHKAIGVKW 882

[Close]
BLAST of Lag0011432 vs. NCBI nr
Match: KAE8699235.1 (hypothetical protein F3Y22_tig00110584pilonHSYRG00372 [Hibiscus syriacus])

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-11
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 20  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW 67
           EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Sbjct: 855 EPVSFQEAVQEKKWRDAMDEEIKAIEKNDTWELTSLPKGHKAIDVKW 901

[Close]
BLAST of Lag0011432 vs. NCBI nr
Match: KAE8706056.1 (Detected protein of unknown function [Hibiscus syriacus])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-11
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 20  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW 67
           EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Sbjct: 731 EPVSFQEAVQEKKWRDAMDEEIKAIEKNDTWELTSLPKGHKAIGVKW 777

[Close]
BLAST of Lag0011432 vs. NCBI nr
Match: KAE8698356.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Hibiscus syriacus])

HSP 1 Score: 81.3 bits (199), Expect = 1.6e-11
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 20  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW 67
           EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Sbjct: 569 EPVSFQEAVQEKKWRDAMDEEIKAIEKNDTWELTSLPKGHKAIGVKW 615

[Close]
BLAST of Lag0011432 vs. ExPASy TrEMBL
Match: A0A0L9TAH8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan437s000300 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.4e-12
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 20 EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW 67
          EP+NFQE +  K+W+ AMDEEI+AIKKNDTWEL SLPKGHKAI VKW
Sbjct: 30 EPMNFQEAIEKKSWRKAMDEEIEAIKKNDTWELASLPKGHKAIGVKW 76

[Close]
BLAST of Lag0011432 vs. ExPASy TrEMBL
Match: A0A6A3A7W1 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110584pilonHSYRG00372 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 5.8e-12
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 20  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW 67
           EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Sbjct: 855 EPVSFQEAVQEKKWRDAMDEEIKAIEKNDTWELTSLPKGHKAIDVKW 901

[Close]
BLAST of Lag0011432 vs. ExPASy TrEMBL
Match: A0A6A2Y2C5 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112857pilonHSYRG00053 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-12
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 20  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW 67
           EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Sbjct: 855 EPVSFQEAVQEKKWRDAMDEEIKAIEKNDTWELTSLPKGHKAIGVKW 901

[Close]
BLAST of Lag0011432 vs. ExPASy TrEMBL
Match: A0A6A2YXM4 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111146pilonHSYRG00032 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-12
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 20  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW 67
           EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Sbjct: 744 EPVSFQEAVQEKKWRDAMDEEIKAIEKNDTWELTSLPKGHKAIGVKW 790

[Close]
BLAST of Lag0011432 vs. ExPASy TrEMBL
Match: A0A6A2YHX5 (Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111743pilonHSYRG00047 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 7.6e-12
Identity = 36/47 (76.60%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 20  EPINFQETVTNKNWKSAMDEEIKAIKKNDTWELVSLPKGHKAIKVKW 67
           EP++FQE V  K W+ AMDEEIKAI+KNDTWEL SLPKGHKAI VKW
Sbjct: 855 EPVSFQEAVQEKKWRDAMDEEIKAIEKNDTWELTSLPKGHKAIGVKW 901

The following BLAST results are available for this feature:
BLAST of Lag0011432 vs. NCBI nr
Match NameE-valueIdentityDescription
KOM27543.17.1e-1276.60hypothetical protein LR48_Vigan437s000300 [Vigna angularis][more]
KAG7559138.17.1e-1276.60Reverse transcriptase RNA-dependent DNA polymerase [Arabidopsis thaliana x Arabi... [more]
KAE8699235.11.2e-1176.60hypothetical protein F3Y22_tig00110584pilonHSYRG00372 [Hibiscus syriacus][more]
KAE8706056.11.6e-1176.60Detected protein of unknown function [Hibiscus syriacus][more]
KAE8698356.11.6e-1176.60Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Hibiscus syriacus][more]
BLAST of Lag0011432 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Lag0011432 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0L9TAH83.4e-1276.60Reverse transcriptase Ty1/copia-type domain-containing protein OS=Phaseolus angu... [more]
A0A6A3A7W15.8e-1276.60Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00110584pilon... [more]
A0A6A2Y2C57.6e-1276.60Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00112857pilon... [more]
A0A6A2YXM47.6e-1276.60Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=... [more]
A0A6A2YHX57.6e-1276.60Uncharacterized protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111743pilon... [more]
BLAST of Lag0011432 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011432.1Lag0011432.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006278 RNA-dependent DNA biosynthetic process
biological_process GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic
molecular_function GO:0043531 ADP binding
molecular_function GO:0030246 carbohydrate binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003964 RNA-directed DNA polymerase activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0008270 zinc ion binding