Lag0011409 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011409
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionRibonuclease H
Locationchr1: 24066299 .. 24066859 (+)
RNA-Seq ExpressionLag0011409
SyntenyLag0011409
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGCTGAGGTGCCCCAGAAGTTCAAAGTACCCACATTCAAGTCGTATGATGGCAATAAGGACACAGTACAACACCTAGACCCCTACAGGACATGGATGGACTTCCACGGCGTTTCAAATGCAATCAGATGTCGTGCTTTCTCTTTCACTTTGACAGGATCAACCAAACAATGGTTTCAAAGGTTGAAAAGGAGATCCATCAACTCTTTCAAAGAATTAACCCGAGCATTCCTCTCGAAGTTCATGGGAGACAGAAAACAGCTCAAGCCTCACATCAACCTCTTAACTATCAAACAACAGACAGGTGAGAGTTTGCATGATTATATAACACGTTTTAACGAGGAAGCAGTGCAGGTTGAGGGATACAGTGAGAGAGCAACCCTAGTAGCCATAACAGCAGGACTGGAGGATGGGAAATTACTGAATTCAATAGATAAAAGCCAACCTCACACTTATGCTGAGTTTGTCTCTATAGCACAGAAGTACATGAGTGCAAAGGAGTTGCTTAGATCGAAGAAGTCAGGACACAAGAGGTATTCTTCATTCGACCGAGACTAG

mRNA sequence

ATGAAAGCTGAGGTGCCCCAGAAGTTCAAAGTACCCACATTCAAGTCGTATGATGGCAATAAGGACACAGTACAACACCTAGACCCCTACAGGACATGGATGGACTTCCACGGCGTTTCAAATGCAATCAGATGTCGTGCTTTCTCTTTCACTTTGACAGGATCAACCAAACAATGGTTTCAAAGGTTGAAAAGGAGATCCATCAACTCTTTCAAAGAATTAACCCGAGCATTCCTCTCGAAGTTCATGGGAGACAGAAAACAGCTCAAGCCTCACATCAACCTCTTAACTATCAAACAACAGACAGGTGAGAGTTTGCATGATTATATAACACGTTTTAACGAGGAAGCAGTGCAGGTTGAGGGATACAGTGAGAGAGCAACCCTAGTAGCCATAACAGCAGGACTGGAGGATGGGAAATTACTGAATTCAATAGATAAAAGCCAACCTCACACTTATGCTGAGTTTGTCTCTATAGCACAGAAGTACATGAGTGCAAAGGAGTTGCTTAGATCGAAGAAGTCAGGACACAAGAGGTATTCTTCATTCGACCGAGACTAG

Coding sequence (CDS)

ATGAAAGCTGAGGTGCCCCAGAAGTTCAAAGTACCCACATTCAAGTCGTATGATGGCAATAAGGACACAGTACAACACCTAGACCCCTACAGGACATGGATGGACTTCCACGGCGTTTCAAATGCAATCAGATGTCGTGCTTTCTCTTTCACTTTGACAGGATCAACCAAACAATGGTTTCAAAGGTTGAAAAGGAGATCCATCAACTCTTTCAAAGAATTAACCCGAGCATTCCTCTCGAAGTTCATGGGAGACAGAAAACAGCTCAAGCCTCACATCAACCTCTTAACTATCAAACAACAGACAGGTGAGAGTTTGCATGATTATATAACACGTTTTAACGAGGAAGCAGTGCAGGTTGAGGGATACAGTGAGAGAGCAACCCTAGTAGCCATAACAGCAGGACTGGAGGATGGGAAATTACTGAATTCAATAGATAAAAGCCAACCTCACACTTATGCTGAGTTTGTCTCTATAGCACAGAAGTACATGAGTGCAAAGGAGTTGCTTAGATCGAAGAAGTCAGGACACAAGAGGTATTCTTCATTCGACCGAGACTAG

Protein sequence

MKAEVPQKFKVPTFKSYDGNKDTVQHLDPYRTWMDFHGVSNAIRCRAFSFTLTGSTKQWFQRLKRRSINSFKELTRAFLSKFMGDRKQLKPHINLLTIKQQTGESLHDYITRFNEEAVQVEGYSERATLVAITAGLEDGKLLNSIDKSQPHTYAEFVSIAQKYMSAKELLRSKKSGHKRYSSFDRD
Homology
BLAST of Lag0011409 vs. NCBI nr
Match: XP_022159109.1 (uncharacterized protein LOC111025548 [Momordica charantia])

HSP 1 Score: 191.4 bits (485), Expect = 6.8e-45
Identity = 93/174 (53.45%), Postives = 126/174 (72.41%), Query Frame = 0

Query: 1   MKAEVPQKFKVPTFKSYDGNKDTVQHLDPYRTWMDFHGVSNAIRCRAFSFTLTGSTKQWF 60
           M+ +VP KFK+PT K +DG  + V HLD YR WMD +GVS+AIRCR FS TL GS + WF
Sbjct: 90  MREKVPPKFKLPTVKPFDGMTEPVDHLDAYREWMDIYGVSDAIRCRVFSTTLNGSARIWF 149

Query: 61  QRLKRRSINSFKELTRAFLSKFMGDRKQLKPHINLLTIKQQTGESLHDYITRFNEEAVQV 120
           ++LKR SI+SFK L RAF+++F+G R + +P   LLTIKQ+T ESLHDY+ RFNEE +Q+
Sbjct: 150 RQLKRGSISSFKSLARAFMTQFVGGRCRSRPVAYLLTIKQRTAESLHDYVARFNEEKLQL 209

Query: 121 EGYSERATLVAITAGLEDGKLLNSIDKSQPHTYAEFVSIAQKYMSAKELLRSKK 175
           EG ++  +L+A  +G+ D  L  S +K  P T++E +S AQ+YMSA E   SK+
Sbjct: 210 EGLTDAVSLLAFMSGVRDEHLSFSFEKRTPSTFSEALSRAQRYMSASEFCYSKR 263

BLAST of Lag0011409 vs. NCBI nr
Match: XP_022150035.1 (uncharacterized protein LOC111018307 [Momordica charantia])

HSP 1 Score: 189.9 bits (481), Expect = 2.0e-44
Identity = 94/186 (50.54%), Postives = 127/186 (68.28%), Query Frame = 0

Query: 1   MKAEVPQKFKVPTFKSYDGNKDTVQHLDPYRTWMDFHGVSNAIRCRAFSFTLTGSTKQWF 60
           MK +VP KFK+PT K +DG  D V HLD YR WMD +GVS A++CR FS TL+GS + WF
Sbjct: 5   MKVKVPPKFKLPTVKQFDGTVDLVDHLDAYREWMDIYGVSEAVKCRVFSTTLSGSARVWF 64

Query: 61  QRLKRRSINSFKELTRAFLSKFMGDRKQLKPHINLLTIKQQTGESLHDYITRFNEEAVQV 120
           ++LKR SI+SFK L +AF+++F+G R + +P   LLTIKQ+  ESLHDY+ RFNEE +QV
Sbjct: 65  RQLKRGSISSFKSLAKAFVTQFIGGRSRSRPVAYLLTIKQRATESLHDYVARFNEEKLQV 124

Query: 121 EGYSERATLVAITAGLEDGKLLNSIDKSQPHTYAEFVSIAQKYMSAKELLRSKKSGHKRY 180
           EG +   +L+A  + + D  L  S  K  P T++E +S AQKYMSA E   SK+    + 
Sbjct: 125 EGLTNAVSLMAFMSDIRDEHLSFSFGKKTPSTFSEALSRAQKYMSAGEFFFSKREPEGKQ 184

Query: 181 SSFDRD 187
           S  +R+
Sbjct: 185 SDQNRE 190

BLAST of Lag0011409 vs. NCBI nr
Match: XP_022147761.1 (uncharacterized protein LOC111016619 [Momordica charantia])

HSP 1 Score: 188.0 bits (476), Expect = 7.6e-44
Identity = 91/184 (49.46%), Postives = 127/184 (69.02%), Query Frame = 0

Query: 1   MKAEVPQKFKVPTFKSYDGNKDTVQHLDPYRTWMDFHGVSNAIRCRAFSFTLTGSTKQWF 60
           MK +VP KFK+P  K YDG+ D + HLD Y  W D +G++ AIRCR FSFTLTGST+ WF
Sbjct: 1   MKEKVPPKFKLPAIKKYDGSTDPIDHLDVYHEWTDIYGITEAIRCRVFSFTLTGSTRIWF 60

Query: 61  QRLKRRSINSFKELTRAFLSKFMGDRKQLKPHINLLTIKQQTGESLHDYITRFNEEAVQV 120
           Q+LKR+SI+SFKEL RAF+++F G   + +P   LLTIKQ+  ESL DY+ RFN+E +QV
Sbjct: 61  QQLKRKSISSFKELARAFVTQFAGGWNRSRPVAYLLTIKQKATESLKDYVARFNKEKLQV 120

Query: 121 EGYSERATLVAITAGLEDGKLLNSIDKSQPHTYAEFVSIAQKYMSAKELLRSKKSGHKRY 180
           EG ++   L+   +G++D +L+ S  K    T++E  S AQ YMS  EL+ SK+    +Y
Sbjct: 121 EGLTDAVVLLVFISGVKDEQLVFSFGKRTSGTFSEARSRAQTYMSVGELIHSKRDPKGKY 180

Query: 181 SSFD 185
           + ++
Sbjct: 181 ADYN 184

BLAST of Lag0011409 vs. NCBI nr
Match: XP_022158830.1 (uncharacterized protein LOC111025293 [Momordica charantia])

HSP 1 Score: 186.8 bits (473), Expect = 1.7e-43
Identity = 92/174 (52.87%), Postives = 123/174 (70.69%), Query Frame = 0

Query: 1   MKAEVPQKFKVPTFKSYDGNKDTVQHLDPYRTWMDFHGVSNAIRCRAFSFTLTGSTKQWF 60
           M+ +VP KFK+PT K +D   D V HLD YR WMD +GVS A+RCR FS TL GS + WF
Sbjct: 185 MREKVPPKFKLPTVKQFDXTTDPVDHLDAYREWMDIYGVSEAVRCRVFSTTLNGSARIWF 244

Query: 61  QRLKRRSINSFKELTRAFLSKFMGDRKQLKPHINLLTIKQQTGESLHDYITRFNEEAVQV 120
           ++LKR SI+SFK L RAF+++F+G R + +P   LLTIKQ+T ESL DY+ RFNEE +QV
Sbjct: 245 RQLKRGSISSFKSLARAFVTQFVGGRCRSRPVAYLLTIKQRTTESLRDYVARFNEEKLQV 304

Query: 121 EGYSERATLVAITAGLEDGKLLNSIDKSQPHTYAEFVSIAQKYMSAKELLRSKK 175
           EG ++  +L+A  +G+ D  L  S  K  P+T++E +S AQ+YMSA E   SK+
Sbjct: 305 EGLTDAVSLLAFMSGVRDEHLSFSFGKRTPNTFSEALSRAQRYMSAGEFFYSKR 358

BLAST of Lag0011409 vs. NCBI nr
Match: XP_022158344.1 (uncharacterized protein LOC111024851 [Momordica charantia])

HSP 1 Score: 182.2 bits (461), Expect = 4.1e-42
Identity = 88/183 (48.09%), Postives = 123/183 (67.21%), Query Frame = 0

Query: 1   MKAEVPQKFKVPTFKSYDGNKDTVQHLDPYRTWMDFHGVSNAIRCRAFSFTLTGSTKQWF 60
           MK +   KFK+P    YDG+ D + HLD YR W D + +  AIRCR FSFTLTGS + WF
Sbjct: 1   MKEKARPKFKLPAIAEYDGSADPIDHLDAYREWADIYDIREAIRCRVFSFTLTGSARNWF 60

Query: 61  QRLKRRSINSFKELTRAFLSKFMGDRKQLKPHINLLTIKQQTGESLHDYITRFNEEAVQV 120
           ++LKR SI+SFKEL  AF+++F+G R + KP   LLTIKQ+  ESL +Y+ RFNEE +QV
Sbjct: 61  RQLKRNSISSFKELAEAFVTQFVGGRVKSKPVTYLLTIKQKATESLKEYVARFNEEKLQV 120

Query: 121 EGYSERATLVAITAGLEDGKLLNSIDKSQPHTYAEFVSIAQKYMSAKELLRSKKSGHKRY 180
           EG ++   L+A  +G++D +L+ S  K  P T+ E +S AQKYMSA EL+   +   +  
Sbjct: 121 EGLTDAVALIAFVSGVKDERLVFSFGKRTPGTFMEALSRAQKYMSAGELIHLSRDLERER 180

Query: 181 SSF 184
           +++
Sbjct: 181 ANY 183

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022159109.16.8e-4553.45uncharacterized protein LOC111025548 [Momordica charantia][more]
XP_022150035.12.0e-4450.54uncharacterized protein LOC111018307 [Momordica charantia][more]
XP_022147761.17.6e-4449.46uncharacterized protein LOC111016619 [Momordica charantia][more]
XP_022158830.11.7e-4352.87uncharacterized protein LOC111025293 [Momordica charantia][more]
XP_022158344.14.1e-4248.09uncharacterized protein LOC111024851 [Momordica charantia][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 47..137
e-value: 7.6E-16
score: 58.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011409.1Lag0011409.1mRNA