Lag0011404 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011404
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 23860453 .. 23861590 (-)
RNA-Seq ExpressionLag0011404
SyntenyLag0011404
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAGATGTCGAACACCACGGGCGCAGATTTTCGAGGTGACAATAGAAGAAATAGCAGCGGTGTGGATTGCAGACAACATCGAAGACCTCCTCCTTTCCCCGAAGACGCAAAAATTCTTTAGGAAAACGGACTGCAATGGAGGCTTCCTATGGATTCAGAAAACTGCAAACAAAAGAGGTGACTTCCTAGAAGTGACAAAGGTCCAGACCTCGGGGGGGGGGGGGAAAGAAATTTGGTCATCCCCGCAGACCTAGACTTCAATGGATGGAAGGTTTTCGAAGATTATTAATGAATTTTCTGAACGGTCAAGGGGATGAGGGGAGAGAAAAGGAACAACTGGTTTTGGAAGGCCAAAAGAACAAGAGTAGATCCTTCGTCGAAGTTTGAGGGGGTCACCCTCGGGTGAACTCAAGGAGAATCCTGAAGGGTGTGAAAAACCGAACCCCAAGACCTATGGAATCAGGAAGATGGAGAAAAGGAAGTCAGAGGCATAAACTGGAATGAGACTCTGGTGATTACTAGACGGGACTTTCATGAAGATTGGGGGAGGATTCTAGACACAATCCAAAACAAACCCAACAGTCATATATTATTAACCCTTTTCTTCCAGACAAAGCCTTCTTAAATGCCCTACGGGGATATGGCTCGTCTGTTAACGGCAAACAGGGGTGGGTCACCTTCGGTCCCTTCACTGTTAAAGTCGAATATTGGAACCCGAATATCCATGGAAGAATCTCAGTATTCCCTCGTACGGTGGTTGGATTAGATTTAGGAACATTCCTATGCATTTATGGAGCTTGGCCACATTTAAAGCGATTGGGGATATGTATGGGGGCTTCATTGATTACGCCCAGGCCAACTCAAATCTCATTGAATGTATGGAAGTGGCTATTAAGGTTAGAGGAAATTATTTGGCTTCATCCCTCGGAAATTCGCCTGATAGATAGGGATCAAACGTTCGTTGCCCAGGCCGTTACTTTTGAGGATTATAACCTCTTGATCGGAAAAATGGTCGGGAAACATGGAGGTTCTCCCGGAGGCGGCGAGGGTGTTTTTGGTTCGGAAAAGGGCTACAGCCCAAACCCAGTGGACATTTGGCATGTGCAAGATGGTGCGCTTTTTGTCCGTGGTTAA

mRNA sequence

ATGTTAAGATGTCGAACACCACGGGCGCAGATTTTCGAGGTGACAATAGAAGAAATAGCAGCGGTGTGGATTGCAGACAACATCGAAGACCTCCTCCTTTCCCCGAAGACGCAAAAATTCTTTAGGAAAACGGACTGCAATGGAGGCTTCCTATGGATTCAGAAAACTGCAAACAAAAGAGACAAAGCCTTCTTAAATGCCCTACGGGGATATGGCTCGTCTGTTAACGGCAAACAGGGGTGGGTCACCTTCGGTCCCTTCACTGTTAAAGTCGAATATTGGAACCCGAATATCCATGGAAGAATCTCAGTATTCCCTCGTACGGTGGTTGGATTAGATTTAGGAACATTCCTATGCATTTATGGAGCTTGGCCACATTTAAAGCGATTGGGGATATGTATGGGGGCTTCATTGATTACGCCCAGGCCAACTCAAATCTCATTGAATGTATGGAAGTGGCTATTAAGGTTAGAGGAAATTATTTGGCTTCATCCCTCGGAAATTCGCCTGATAGATAGGGATCAAACGTTCGTTGCCCAGGCCGTTACTTTTGAGGATTATAACCTCTTGATCGGAAAAATGGTCGGGAAACATGGAGGTTCTCCCGGAGGCGGCGAGGGTGTTTTTGGTTCGGAAAAGGGCTACAGCCCAAACCCAGTGGACATTTGGCATGTGCAAGATGGTGCGCTTTTTGTCCGTGGTTAA

Coding sequence (CDS)

ATGTTAAGATGTCGAACACCACGGGCGCAGATTTTCGAGGTGACAATAGAAGAAATAGCAGCGGTGTGGATTGCAGACAACATCGAAGACCTCCTCCTTTCCCCGAAGACGCAAAAATTCTTTAGGAAAACGGACTGCAATGGAGGCTTCCTATGGATTCAGAAAACTGCAAACAAAAGAGACAAAGCCTTCTTAAATGCCCTACGGGGATATGGCTCGTCTGTTAACGGCAAACAGGGGTGGGTCACCTTCGGTCCCTTCACTGTTAAAGTCGAATATTGGAACCCGAATATCCATGGAAGAATCTCAGTATTCCCTCGTACGGTGGTTGGATTAGATTTAGGAACATTCCTATGCATTTATGGAGCTTGGCCACATTTAAAGCGATTGGGGATATGTATGGGGGCTTCATTGATTACGCCCAGGCCAACTCAAATCTCATTGAATGTATGGAAGTGGCTATTAAGGTTAGAGGAAATTATTTGGCTTCATCCCTCGGAAATTCGCCTGATAGATAGGGATCAAACGTTCGTTGCCCAGGCCGTTACTTTTGAGGATTATAACCTCTTGATCGGAAAAATGGTCGGGAAACATGGAGGTTCTCCCGGAGGCGGCGAGGGTGTTTTTGGTTCGGAAAAGGGCTACAGCCCAAACCCAGTGGACATTTGGCATGTGCAAGATGGTGCGCTTTTTGTCCGTGGTTAA

Protein sequence

MLRCRTPRAQIFEVTIEEIAAVWIADNIEDLLLSPKTQKFFRKTDCNGGFLWIQKTANKRDKAFLNALRGYGSSVNGKQGWVTFGPFTVKVEYWNPNIHGRISVFPRTVVGLDLGTFLCIYGAWPHLKRLGICMGASLITPRPTQISLNVWKWLLRLEEIIWLHPSEIRLIDRDQTFVAQAVTFEDYNLLIGKMVGKHGGSPGGGEGVFGSEKGYSPNPVDIWHVQDGALFVRG
Homology
BLAST of Lag0011404 vs. NCBI nr
Match: XP_022149859.1 (uncharacterized protein LOC111018186 [Momordica charantia] >XP_022149860.1 uncharacterized protein LOC111018186 [Momordica charantia])

HSP 1 Score: 72.0 bits (175), Expect = 7.6e-09
Identity = 49/158 (31.01%), Postives = 72/158 (45.57%), Query Frame = 0

Query: 79  QGWVTFGPFTVKVEYWNPNIHGRISVFPRTVVGLDLGTFLCIYGAWPHL------KRLGI 138
           +GWVTFGP TVK+E WNP +HGR  +FP        G ++ I     HL      K +G 
Sbjct: 103 KGWVTFGPVTVKLEAWNPLLHGRAFLFP------SYGNWVKIRNIPLHLWSLATFKAIGN 162

Query: 139 CMGASLITPRPTQISLNVWKWLLRLE-EIIWLHPSEIRLIDRDQTFVAQAVTFEDYNLLI 198
            +G  +         +  +   ++++       P+EI  +D    F A+ V+FED   L 
Sbjct: 163 ALGGFIDYDDNNSCFIECFDVAIKVKSNYCGFIPAEISSMDGPLCFQAKVVSFEDSKWLA 222

Query: 199 GKMVGKHGG-SPGGGEGVFGSEKGYSPNPVDIWHVQDG 229
            K VG HGG S              S N +D W +++G
Sbjct: 223 RKDVGIHGGFSSEAARSFHQGSAEQSANSIDRWRLENG 254

BLAST of Lag0011404 vs. NCBI nr
Match: XP_031737554.1 (transcription factor Pur-alpha 1-like [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 9.3e-07
Identity = 34/77 (44.16%), Postives = 45/77 (58.44%), Query Frame = 0

Query: 17  EEIAAVWIADNIEDLLLSPKTQKFFRKTDCNGGFLWIQKTANKRDKAFLNALRGYGSSVN 76
           EE    W+A+++E++L + K QKFFRKT CNGGF WIQKT NKR  +FL   +   S   
Sbjct: 45  EETLFGWLAESLEEVLQTSKPQKFFRKTFCNGGFTWIQKTTNKRG-SFLEISKVLKSGKK 104

Query: 77  GK---------QGWVTF 85
           G          +GW +F
Sbjct: 105 GNIVVPAGVDLKGWESF 120

BLAST of Lag0011404 vs. NCBI nr
Match: KAG7026390.1 (Vacuolar protein sorting-associated protein 54, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-05
Identity = 31/74 (41.89%), Postives = 38/74 (51.35%), Query Frame = 0

Query: 79   QGWVTFGPFTVKVEYWNPNIHGRISVFPRTVVGLDLGTFLCIYGAWPHLKRLGICMGASL 138
            +GWV  GP T K++ WNP IHGRISV P     + L    C   AW HLK L + +  S 
Sbjct: 962  KGWVLLGPITTKMDLWNPLIHGRISVVPSYGSWVKLRNIPCTSRAWKHLK-LWVPLEVSW 1021

Query: 139  ITPRPTQISLNVWK 153
            I       SL  W+
Sbjct: 1022 IILTEILASLISWR 1034

BLAST of Lag0011404 vs. NCBI nr
Match: KAG6601809.1 (hypothetical protein SDJN03_07042, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 56.2 bits (134), Expect = 4.3e-04
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 0

Query: 10 QIFEVTIEEIAAVWIADNIEDLLLSPKTQKFFRKTDCNGGFLWIQKTANKR 61
          + F+VT+EEI   W  D +EDLLL+P + + FRK  CNG F+W+ +  NKR
Sbjct: 35 RFFKVTVEEI-VFWPVDILEDLLLAPPSLRVFRKPVCNGRFIWLHRIKNKR 84

BLAST of Lag0011404 vs. ExPASy TrEMBL
Match: A0A6J1D6X4 (uncharacterized protein LOC111018186 OS=Momordica charantia OX=3673 GN=LOC111018186 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.7e-09
Identity = 49/158 (31.01%), Postives = 72/158 (45.57%), Query Frame = 0

Query: 79  QGWVTFGPFTVKVEYWNPNIHGRISVFPRTVVGLDLGTFLCIYGAWPHL------KRLGI 138
           +GWVTFGP TVK+E WNP +HGR  +FP        G ++ I     HL      K +G 
Sbjct: 103 KGWVTFGPVTVKLEAWNPLLHGRAFLFP------SYGNWVKIRNIPLHLWSLATFKAIGN 162

Query: 139 CMGASLITPRPTQISLNVWKWLLRLE-EIIWLHPSEIRLIDRDQTFVAQAVTFEDYNLLI 198
            +G  +         +  +   ++++       P+EI  +D    F A+ V+FED   L 
Sbjct: 163 ALGGFIDYDDNNSCFIECFDVAIKVKSNYCGFIPAEISSMDGPLCFQAKVVSFEDSKWLA 222

Query: 199 GKMVGKHGG-SPGGGEGVFGSEKGYSPNPVDIWHVQDG 229
            K VG HGG S              S N +D W +++G
Sbjct: 223 RKDVGIHGGFSSEAARSFHQGSAEQSANSIDRWRLENG 254

BLAST of Lag0011404 vs. ExPASy TrEMBL
Match: A0A0A0L427 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572310 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-08
Identity = 39/107 (36.45%), Postives = 54/107 (50.47%), Query Frame = 0

Query: 17  EEIAAVWIADNIEDLLLSPKTQKFFRKTDCNGGFLWIQKTANKRDKAFLNALRGYGSSVN 76
           EEI  VW+ D++E++L +PK+ KFFR+T CNGGF WIQ+T NKR  +FL   +   S   
Sbjct: 281 EEILFVWLVDSLEEVLQTPKSDKFFRETFCNGGFSWIQETTNKRG-SFLEISKVLKSGKK 340

Query: 77  GK---------QGWVTFGPFT---VKVEYWNPNIHGRISVFPRTVVG 112
           G          +GW  F       +  EY     H    + P+   G
Sbjct: 341 GNIVVPAGIDLKGWEQFRRLLLDFLNAEYEPRAPHSEKKIIPKPPFG 386

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149859.17.6e-0931.01uncharacterized protein LOC111018186 [Momordica charantia] >XP_022149860.1 uncha... [more]
XP_031737554.19.3e-0744.16transcription factor Pur-alpha 1-like [Cucumis sativus][more]
KAG7026390.15.1e-0541.89Vacuolar protein sorting-associated protein 54, chloroplastic [Cucurbita argyros... [more]
KAG6601809.14.3e-0449.02hypothetical protein SDJN03_07042, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D6X43.7e-0931.01uncharacterized protein LOC111018186 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A0A0L4271.8e-0836.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G572310 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011404.1Lag0011404.1mRNA