Lag0011361 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0011361
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionUnknown protein
Locationchr1: 22773998 .. 22776347 (-)
RNA-Seq ExpressionLag0011361
SyntenyLag0011361
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCGGCCTCGGCCTTGGAATGAGGCCGAGCATTTCTTCTGCTTTGCTTGCCAATTTGCTCTGTTGTATCCATCCCGACGGTGCGTACACTCAGTTAGGGAAAACTTGGAGAAAAAGCTTGGGGAGGTCTAGAAAGTTCCCGAGCCTCTCTTCAAGCATTACATTCATCCCAGGGGTGCGTACACTCTTCTAGGGAAAAAGCTTGGGGAGGCCTAGGAAGTTCCCAGGCCTCTCTTCAAGCGTCATGGTAATCCCAGGGGTGCGAACACTCTTCTTGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAAGGGTGCGTACACTCTTCTAGGGAAAAAACTTGGGGAGGCCTAGGAAATTCTCGGCCTCTCTTCAAGCGTCATAGTCATCCTAGGGGTGCGTACACTCTTCTAGGAAAAAGCTTGGGGAGGCTGAGGGAATTCTCAGGCCTCTCTTCAAGCGTCATAGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAAAAACTTGGGGAGGCCTAGGAAATTCTCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAAAAACTTGGAGAGGCCTAGGAAATTCTCGAGGCTCTCTTCAAGCGTCATGGTCATCTTAGGGGTGTGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAACCTCTCTTCAAGTGTCAAGGTCATCCCAGGGGTGCGTACACACTTTTGGGAAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATGGTCATTCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTAATGGTCATCCTAAGGGTGCATACACTCTTCTAGGGAAAAGCTTTGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTTGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATAGTAATCCCAGGGGTGCGTACACTCTTCTAGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCCCTTCAAGCGTCATAGTCATCCCAGGGGTGCATACACTCTTCTGGGGAAAAGCTGTGGGAGGCCGAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAGGGGTGCGTACACTCTTATGTGGAAAAGCTTGGGGAGGCGTAGGAAATTTCCAAGCCACTCTTCAAGCGTCATGGTCATCCTAGGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGGGCCTCTCTTCAAGCGTTATAGTCATCCCAGGGGTGTGTACACTCTTCTAGGGAAAAGCTTGGGGAGTTCTAGGAAATTCCCGAGTCTCTCTTCAAGCGTCATGGTCATCCTAGGGGTGCGTACACTCTTATGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAATCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTATTCATCTCGAGGGTGCGTACACTCATTCGGGGAAAGTTCGGAAGTTTGGCCTCTACAAGGATCATTCCTGTCTGGCCACCCGCGTTACATCCCATGGAAAAAACACTTTATGCAAACCACAACGCAAAGAACTTCATTAAATTCGCAAGTGTCGACATCGTACCATGGGGAAATGCTATGGACATGTGTTATACAAAATGAAAGGAAAGTTAAAATCATCGCAACATGACGATGATTATGATGGACTTGACTTGTCCTTATCCCCAACCCTCCACTCAAAATGTTCATTCAATATCTTGGGCATGAATTTTTTGAGTAAGGAAAAACTAACTTCGTACTTGGGCCTCTAAGGGTGGAGCTCGGCCTTGGCCTCTGGATGGTCGACATCGGCCTTGGCATGAGGCCGACCAGTTCCTCTGTGTTGTTCGTTTGCTTGTTTTCCATCCCAAGGGTGTCGCACTCAGTTGGGGACTTGGGGAGGTTGAAGGCATGCGTCAACCTCTCTTCAAGTGTTGTGTCCATCCCAGGGGTGCGTACACTCTTCTGGGGAATACTTGGGGAGGTCGAGGAATTTCCCGAGCCCCCACTCAAAATATGCATTTAA

mRNA sequence

ATGCCCGGCCTCGGCCTTGGAATGAGGCCGAGCATTTCTTCTGCTTTGCTTGCCAATTTGCTCTGTTGTATCCATCCCGACGGTGCGTACACTCAGTTAGGGAAAACTTGGAGAAAAAGCTTGGGGAGGTCTAGAAAGTTCCCGAGCCTCTCTTCAAGCATTACATTCATCCCAGGGGGGTGCGTACACTCTTCTAGGAAAAAGCTTGGGGAGGCTGAGGGAATTCTCAGGCCTCTCTTCAAGCGTCATAGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAAAAACTTGGGGAGGCCTAGGAAATTCTCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAAAAACTTGGAGAGGCCTAGGAAATTCTCGAGGCTCTCTTCAAGCGTCATGGTCATCTTAGGGGTGTGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAACCTCTCTTCAAGTGTCAAGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAAGCTTTGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATAGTAATCCCAGGGGGGTGCATACACTCTTCTGGGGAAAAGCTGTGGGAGGCCGAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAGGGGTGCGTACACTCTTATGTGGAAAAGCTTGGGGAGGCGTAGGAAATTTCCAAGCCACTCTTCAAGCGTCATGGTCATCCTAGGGGAAATTCCCGAGTCTCTCTTCAAGCGTCATGGTCATCCTAGGGGTGCGTACACTCTTATGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAATCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTATTCATCTCGAGGGTGCGTACACTCATTCGGGGAAAGTTCGGAAGTTTGGCCTCTACAAGGATCATTCCTGTCTGGCCACCCGCGTTACATCCCATGGAAAAAACACTTTATGCAAACCACAACGCAAAGAACTTCATTAAATTCGCAAGTGTCGACATCGTACCATGGGGAAATGCTATGGACATGGTGGAGCTCGGCCTTGGCCTCTGGATGGTCGACATCGGCCTTGGCATGAGGCCGACCAGTTCCTCTGTGTTGTTCGTTTGCTTGTTTTCCATCCCAAGGGTGTCGCACTCAGTTGGGGACTTGGGGAGGTTGAAGGCATGCGTCAACCTCTCTTCAAGTGTTGTGTCCATCCCAGGGGTGCGTACACTCTTCTGGGGAATACTTGGGGAGGTCGAGGAATTTCCCGAGCCCCCACTCAAAATATGCATTTAA

Coding sequence (CDS)

ATGCCCGGCCTCGGCCTTGGAATGAGGCCGAGCATTTCTTCTGCTTTGCTTGCCAATTTGCTCTGTTGTATCCATCCCGACGGTGCGTACACTCAGTTAGGGAAAACTTGGAGAAAAAGCTTGGGGAGGTCTAGAAAGTTCCCGAGCCTCTCTTCAAGCATTACATTCATCCCAGGGGGGTGCGTACACTCTTCTAGGAAAAAGCTTGGGGAGGCTGAGGGAATTCTCAGGCCTCTCTTCAAGCGTCATAGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGAAAAAAACTTGGGGAGGCCTAGGAAATTCTCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAAGGGTGCGTACACTCTTCTGGGGAAAAAACTTGGAGAGGCCTAGGAAATTCTCGAGGCTCTCTTCAAGCGTCATGGTCATCTTAGGGGTGTGTACACTCTTCTGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCCCGAACCTCTCTTCAAGTGTCAAGGTCATCCCAGGGGGGTGCGTACACTCTTCTGGGGAAAAGCTTTGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCGTCATAGTAATCCCAGGGGGGTGCATACACTCTTCTGGGGAAAAGCTGTGGGAGGCCGAGGAAATTCCCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAGGGGTGCGTACACTCTTATGTGGAAAAGCTTGGGGAGGCGTAGGAAATTTCCAAGCCACTCTTCAAGCGTCATGGTCATCCTAGGGGAAATTCCCGAGTCTCTCTTCAAGCGTCATGGTCATCCTAGGGGTGCGTACACTCTTATGGGGAAAAGCTTGGGGAGGCCTAGGAAATTCTCGGGCCTCTCTTCAAGCGTCATAGTCATCCCAGGGGTGCGTACACTCTTCTGGGGAAAATCTTGGGGAGGCCTAGGAAATTCCCGAGCCTCTCTTCAAGCTGTTGTATTCATCTCGAGGGTGCGTACACTCATTCGGGGAAAGTTCGGAAGTTTGGCCTCTACAAGGATCATTCCTGTCTGGCCACCCGCGTTACATCCCATGGAAAAAACACTTTATGCAAACCACAACGCAAAGAACTTCATTAAATTCGCAAGTGTCGACATCGTACCATGGGGAAATGCTATGGACATGGTGGAGCTCGGCCTTGGCCTCTGGATGGTCGACATCGGCCTTGGCATGAGGCCGACCAGTTCCTCTGTGTTGTTCGTTTGCTTGTTTTCCATCCCAAGGGTGTCGCACTCAGTTGGGGACTTGGGGAGGTTGAAGGCATGCGTCAACCTCTCTTCAAGTGTTGTGTCCATCCCAGGGGTGCGTACACTCTTCTGGGGAATACTTGGGGAGGTCGAGGAATTTCCCGAGCCCCCACTCAAAATATGCATTTAA

Protein sequence

MPGLGLGMRPSISSALLANLLCCIHPDGAYTQLGKTWRKSLGRSRKFPSLSSSITFIPGGCVHSSRKKLGEAEGILRPLFKRHSHPKGAYTLLGKSLGRPRKFPGLSSSVIVIPGVRTLFWEKNLGRPRKFSGLSSSVIVIPRVRTLFWGKNLERPRKFSRLSSSVMVILGVCTLFWGKAWGGLGNSRTSLQVSRSSQGGAYTLLGKSFGRPRKFPSLSSSVIVIPGGCIHSSGEKLWEAEEIPGPLFKRHSHPRGAYTLMWKSLGRRRKFPSHSSSVMVILGEIPESLFKRHGHPRGAYTLMGKSLGRPRKFSGLSSSVIVIPGVRTLFWGKSWGGLGNSRASLQAVVFISRVRTLIRGKFGSLASTRIIPVWPPALHPMEKTLYANHNAKNFIKFASVDIVPWGNAMDMVELGLGLWMVDIGLGMRPTSSSVLFVCLFSIPRVSHSVGDLGRLKACVNLSSSVVSIPGVRTLFWGILGEVEEFPEPPLKICI
Homology
The following BLAST results are available for this feature:
BLAST of Lag0011361 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0011361 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0011361 vs.
Match NameE-valueIdentityDescription
BLAST of Lag0011361 vs.
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017956AT hook, DNA-binding motifSMARTSM00384AT_hook_2coord: 206..218
e-value: 67.0
score: 5.0
coord: 38..50
e-value: 210.0
score: 2.2
coord: 94..106
e-value: 14.0
score: 8.8
coord: 122..134
e-value: 21.0
score: 7.8
coord: 304..316
e-value: 18.0
score: 8.2

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0011361.1Lag0011361.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding