Lag0011349 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011349
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	DNA-directed RNA polymerase V subunit 5C-like
Location	chr1: 22391320 .. 22392489 (+)
RNA-Seq Expression	Lag0011349
Synteny	Lag0011349

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAACAAGAAGATGGTCAAAAGGGTATGGAAGATGTTGCTGCCATGGTAGTTGAAGAGGACCCGAAAGAACCAGAAGAACAAAATCCAAGTAGAATGAACAGAGAGTTGCACATACAGAGGAAGCTCAAGAAGAGGTTCAAGAAAAAAAACAGAATGAAGATGTGCGAGAAGAACAGGCAGAGGTTGCACCTGAAGGAGATAATGAGCCAGTACAGGAGGCTCGAGTGGAGGTGATCATGCCGGAGGCACCCAAACGTCGCCGCATTGAGCGAAAAACAGGTCGCATCAAGGTAGTCCGAACTGACACCCCATTACCCCATCTACTGACTCTGAAAGAGAAAATGCAGAGAAAGAAGAGCGAGAGAAAAAAGAAGCTGAGGAAAAAGTGAAAGAAGACGCAGAGAAGAAAGCTGAGGAAGCGCGGTTGCTCAAGCGAAGGGCGGAAAAGGAGCAAAAGTGTTGCTGAAGCATCAGAAGAACACGATGAAATAGAAGAACAACAGTTACCATTTGATCGCTTCGTCAAAATTTTGCCAGAGCAAAATACTCTGAGCTGCTGAAAAGAGACTTCCTGTTTGAGAGAGGATTTAGCGGTGATCTTCCGTATTTTCTAAAGACCGGTATTGCAGACCACGACAGGGATTTGTTTTGTGCGAAGCCTGAGTCTGTAAATGCGTAGGTGGAACGCGAATTTTATGCTAACATTGACAAATAGGATGGTTTCCAGGTGATTGTTCGAGGAGTCGAGGTAGACTGAAGTCCTAGTGCTATTAAGGCACTGTTTAACCTTTAGAATTTCCCCCATGCAGCATATAATGAATGGTTATAACGCCATCTAGTGAGCAGCTAAGTGAGGCTGTGCGGGAGGTAGGTATTGAAGGGGCACAGTGGCGACTGTCCAAGACAGAGAAGAGGACGTTCCAGTCGGCTTATTTGAAAAAGGGAAGCAAACACATGGATGGATTTATCAGACAAAGGATGCTTCCAATGACACACGACTCGACAGTCTCAAGGGAACGAGTTCTTCTAGCTTTTGCGGTTTTGCGGTCTCTCACCATTGACGTAGGAAAGATCATTGTTAATGAAATGTTTGGATGTTGGAAGAAAAAGGAGGGGAAGCCGCTTTTTCCGAACACGATCACTATGTTATGCAGCAGGACATGA

mRNA sequence

ATGGAGGAACAAGAAGATGGTCAAAAGGGTATGGAAGATGTTGCTGCCATGGTAGTTGAAGAGGACCCGAAAGAACCAGAAGAACAAAATCCAAGTAGAATGAACAGAGAGTTGCACATACAGAGGAAGCTCAAGAAGAGGTTCAAGAAAAAAAACAGAATGAAGATGTGCGAGAAGAACAGGCAGAGGTTGCACCTGAAGGAGATAATGAGCCAGTACAGGAGGCTCGAGTGGAGAGAAAATGCAGAGAAAGAAGAGCGAGAGAAAAAAGAAGCTGAGGAAAAAGTGAAAGAAGACGCAGAGAAGAAAGCTGAGGAAGCGCGGTTGCTCAAGCGAAGGGCGGAAAAGGAGCAAAAAGCAAAATACTCTGAGCTGCTGAAAAGAGACTTCCTGTTTGAGAGAGGATTTAGCGGTGATCTTCCGTATTTTCTAAAGACCGGTATTGCAGACCACGACAGGGATTTGTTTTGTGCGAAGCCTGAGTCTGTAAATGCTGAGCAGCTAAGTGAGGCTGTGCGGGAGGTAGGTATTGAAGGGGCACAGTGGCGACTGTCCAAGACAGAGAAGAGGACGTTCCAGTCGGCTTATTTGAAAAAGGGAAGCAAACACATGGATGGATTTATCAGACAAAGGATGCTTCCAATGACACACGACTCGACAGTCTCAAGGGAACGAGTTCTTCTAGCTTTTGCGGTTTTGCGGTCTCTCACCATTGACGTAGGAAAGATCATTGTTAATGAAATGTTTGGATGTTGGAAGAAAAAGGAGGGGAAGCCGCTTTTTCCGAACACGATCACTATGTTATGCAGCAGGACATGA

Coding sequence (CDS)

ATGGAGGAACAAGAAGATGGTCAAAAGGGTATGGAAGATGTTGCTGCCATGGTAGTTGAAGAGGACCCGAAAGAACCAGAAGAACAAAATCCAAGTAGAATGAACAGAGAGTTGCACATACAGAGGAAGCTCAAGAAGAGGTTCAAGAAAAAAAACAGAATGAAGATGTGCGAGAAGAACAGGCAGAGGTTGCACCTGAAGGAGATAATGAGCCAGTACAGGAGGCTCGAGTGGAGAGAAAATGCAGAGAAAGAAGAGCGAGAGAAAAAAGAAGCTGAGGAAAAAGTGAAAGAAGACGCAGAGAAGAAAGCTGAGGAAGCGCGGTTGCTCAAGCGAAGGGCGGAAAAGGAGCAAAAAGCAAAATACTCTGAGCTGCTGAAAAGAGACTTCCTGTTTGAGAGAGGATTTAGCGGTGATCTTCCGTATTTTCTAAAGACCGGTATTGCAGACCACGACAGGGATTTGTTTTGTGCGAAGCCTGAGTCTGTAAATGCTGAGCAGCTAAGTGAGGCTGTGCGGGAGGTAGGTATTGAAGGGGCACAGTGGCGACTGTCCAAGACAGAGAAGAGGACGTTCCAGTCGGCTTATTTGAAAAAGGGAAGCAAACACATGGATGGATTTATCAGACAAAGGATGCTTCCAATGACACACGACTCGACAGTCTCAAGGGAACGAGTTCTTCTAGCTTTTGCGGTTTTGCGGTCTCTCACCATTGACGTAGGAAAGATCATTGTTAATGAAATGTTTGGATGTTGGAAGAAAAAGGAGGGGAAGCCGCTTTTTCCGAACACGATCACTATGTTATGCAGCAGGACATGA

Protein sequence

MEEQEDGQKGMEDVAAMVVEEDPKEPEEQNPSRMNRELHIQRKLKKRFKKKNRMKMCEKNRQRLHLKEIMSQYRRLEWRENAEKEEREKKEAEEKVKEDAEKKAEEARLLKRRAEKEQKAKYSELLKRDFLFERGFSGDLPYFLKTGIADHDRDLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGFIRQRMLPMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITMLCSRT

Homology

[Close]

BLAST of Lag0011349 vs. NCBI nr
Match: TYI22425.1 (hypothetical protein ES332_A06G102500v1 [Gossypium tomentosum])

HSP 1 Score: 79.0 bits (193), Expect = 7.2e-11
Identity = 40/124 (32.26%), Postives = 68/124 (54.84%), Query Frame = 0


Query: 148 IADHDRDLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGF 207
           + D + D +     ++N + L + +  +   G+QW + K    + Q  YLK  +K    F
Sbjct: 66  LLDVEEDEYYPMMNNINWDFLQQVLDVLTNLGSQWSIRKYGSHSCQREYLKPVAKVWFHF 125

Query: 208 IRQRMLPMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITM 267
           +R   +P++H ST+  E++L  + +L   +I+VGKII+ E+  C KKK G   FP+ IT 
Sbjct: 126 VRNSFMPISHSSTILMEQMLFLYVILTENSINVGKIILKEIHDCAKKKIGSDYFPSLITS 185

Query: 268 LCSR 272
           +C R
Sbjct: 186 ICLR 189

[Close]

BLAST of Lag0011349 vs. NCBI nr
Match: TYG37159.1 (hypothetical protein ES288_D13G120000v1 [Gossypium darwinii])

HSP 1 Score: 78.6 bits (192), Expect = 9.4e-11
Identity = 40/124 (32.26%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 148 IADHDRDLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGF 207
           + D ++D +     +++ + L + +  V   G+QW + K    + +  YLK  +K    F
Sbjct: 115 LPDVEKDEYYPMTNNISWDFLQQVLDFVTNLGSQWIVRKYGSHSCRREYLKPVAKVWFYF 174

Query: 208 IRQRMLPMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITM 267
           +R   +P+ H ST+S E++LL + +L   +I++GKII+ E+  C K K G   FP+ IT 
Sbjct: 175 VRYNFMPILHSSTISMEQMLLLYTILTEKSINIGKIILKEIHDCAKSKAGSAYFPSLITS 234

Query: 268 LCSR 272
           LC R
Sbjct: 235 LCLR 238

[Close]

BLAST of Lag0011349 vs. NCBI nr
Match: KAB2005540.1 (hypothetical protein ES319_D11G277400v1 [Gossypium barbadense])

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-10
Identity = 42/124 (33.87%), Postives = 66/124 (53.23%), Query Frame = 0


Query: 148 IADHDRDLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGF 207
           + D + D +     ++N + L + +  V   G QW + K    + Q  YLK   K    F
Sbjct: 115 LPDVEEDEYYPMMSNINWDFLQQVLDVVTNLGPQWIIRKYRSHSCQREYLKSIGKVWFYF 174

Query: 208 IRQRMLPMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITM 267
           +R   +P++H ST+S +R+L  +A+L   +I+VGKII+ E+  C KKK     FP+  T 
Sbjct: 175 VRYSFMPISHSSTISMKRMLSLYAILTEKSINVGKIILKEIHDCAKKKAESAYFPSLTTS 234

Query: 268 LCSR 272
           LC R
Sbjct: 235 LCLR 238

[Close]

BLAST of Lag0011349 vs. NCBI nr
Match: TYH88163.1 (hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum])

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-10
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 148 IADHDRDLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGF 207
           + D + D +     ++N + L + +  V   G+QW + K    + +  YLK  +     F
Sbjct: 115 LPDVEEDEYYPMINNMNWDFLQQVLDVVTNSGSQWIIRKYGSHSCRREYLKPIANVWFYF 174

Query: 208 IRQRMLPMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITM 267
           ++   +P++H  T+S ER+LL +A+L   +I+VGKII+ E+  C KKK G   FP+ IT 
Sbjct: 175 VQYSFMPISHSYTISMERMLLLYAILTEKSINVGKIILKEIHNCAKKKAGSVYFPSLITS 234

Query: 268 LC 270
           LC
Sbjct: 235 LC 236

[Close]

BLAST of Lag0011349 vs. NCBI nr
Match: TYG52543.1 (hypothetical protein ES288_D09G036700v1 [Gossypium darwinii])

HSP 1 Score: 77.0 bits (188), Expect = 2.7e-10
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 154 DLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGFIRQRML 213
           ++   K  ++N + L + +  V   G+QW +      + Q  YLK  +K    F+R   +
Sbjct: 94  EVIVRKKSNINWDFLQQVLDVVTNLGSQWIIRNYGSHSCQREYLKPVAKVWFYFVRYSFM 153

Query: 214 PMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITMLC 270
           P++H ST+S E +LL +A+L   +I+VGKII+ E+  C KKK     FP+ IT LC
Sbjct: 154 PISHSSTISMEWMLLLYAILTEKSINVGKIILKEIQNCAKKKARSAYFPSLITSLC 209

[Close]

BLAST of Lag0011349 vs. ExPASy TrEMBL
Match: A0A5D2Q4A4 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A06G102500v1 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.5e-11
Identity = 40/124 (32.26%), Postives = 68/124 (54.84%), Query Frame = 0


Query: 148 IADHDRDLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGF 207
           + D + D +     ++N + L + +  +   G+QW + K    + Q  YLK  +K    F
Sbjct: 66  LLDVEEDEYYPMMNNINWDFLQQVLDVLTNLGSQWSIRKYGSHSCQREYLKPVAKVWFHF 125

Query: 208 IRQRMLPMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITM 267
           +R   +P++H ST+  E++L  + +L   +I+VGKII+ E+  C KKK G   FP+ IT 
Sbjct: 126 VRNSFMPISHSSTILMEQMLFLYVILTENSINVGKIILKEIHDCAKKKIGSDYFPSLITS 185

Query: 268 LCSR 272
           +C R
Sbjct: 186 ICLR 189

[Close]

BLAST of Lag0011349 vs. ExPASy TrEMBL
Match: A0A5D1ZYC3 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D13G120000v1 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.6e-11
Identity = 40/124 (32.26%), Postives = 69/124 (55.65%), Query Frame = 0


Query: 148 IADHDRDLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGF 207
           + D ++D +     +++ + L + +  V   G+QW + K    + +  YLK  +K    F
Sbjct: 115 LPDVEKDEYYPMTNNISWDFLQQVLDFVTNLGSQWIVRKYGSHSCRREYLKPVAKVWFYF 174

Query: 208 IRQRMLPMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITM 267
           +R   +P+ H ST+S E++LL + +L   +I++GKII+ E+  C K K G   FP+ IT 
Sbjct: 175 VRYNFMPILHSSTISMEQMLLLYTILTEKSINIGKIILKEIHDCAKSKAGSAYFPSLITS 234

Query: 268 LCSR 272
           LC R
Sbjct: 235 LCLR 238

[Close]

BLAST of Lag0011349 vs. ExPASy TrEMBL
Match: A0A5D2MA47 (Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G168900v1 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.0e-11
Identity = 41/122 (33.61%), Postives = 68/122 (55.74%), Query Frame = 0


Query: 148 IADHDRDLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGF 207
           + D + D +     ++N + L + +  V   G+QW + K    + +  YLK  +     F
Sbjct: 115 LPDVEEDEYYPMINNMNWDFLQQVLDVVTNSGSQWIIRKYGSHSCRREYLKPIANVWFYF 174

Query: 208 IRQRMLPMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITM 267
           ++   +P++H  T+S ER+LL +A+L   +I+VGKII+ E+  C KKK G   FP+ IT 
Sbjct: 175 VQYSFMPISHSYTISMERMLLLYAILTEKSINVGKIILKEIHNCAKKKAGSVYFPSLITS 234

Query: 268 LC 270
           LC
Sbjct: 235 LC 236

[Close]

BLAST of Lag0011349 vs. ExPASy TrEMBL
Match: A0A5J5PJ67 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D11G277400v1 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 6.0e-11
Identity = 42/124 (33.87%), Postives = 66/124 (53.23%), Query Frame = 0


Query: 148 IADHDRDLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGF 207
           + D + D +     ++N + L + +  V   G QW + K    + Q  YLK   K    F
Sbjct: 115 LPDVEEDEYYPMMSNINWDFLQQVLDVVTNLGPQWIIRKYRSHSCQREYLKSIGKVWFYF 174

Query: 208 IRQRMLPMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITM 267
           +R   +P++H ST+S +R+L  +A+L   +I+VGKII+ E+  C KKK     FP+  T 
Sbjct: 175 VRYSFMPISHSSTISMKRMLSLYAILTEKSINVGKIILKEIHDCAKKKAESAYFPSLTTS 234

Query: 268 LCSR 272
           LC R
Sbjct: 235 LCLR 238

[Close]

BLAST of Lag0011349 vs. ExPASy TrEMBL
Match: A0A5D2B8V0 (Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D09G036700v1 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.3e-10
Identity = 41/116 (35.34%), Postives = 65/116 (56.03%), Query Frame = 0


Query: 154 DLFCAKPESVNAEQLSEAVREVGIEGAQWRLSKTEKRTFQSAYLKKGSKHMDGFIRQRML 213
           ++   K  ++N + L + +  V   G+QW +      + Q  YLK  +K    F+R   +
Sbjct: 94  EVIVRKKSNINWDFLQQVLDVVTNLGSQWIIRNYGSHSCQREYLKPVAKVWFYFVRYSFM 153

Query: 214 PMTHDSTVSRERVLLAFAVLRSLTIDVGKIIVNEMFGCWKKKEGKPLFPNTITMLC 270
           P++H ST+S E +LL +A+L   +I+VGKII+ E+  C KKK     FP+ IT LC
Sbjct: 154 PISHSSTISMEWMLLLYAILTEKSINVGKIILKEIQNCAKKKARSAYFPSLITSLC 209

The following BLAST results are available for this feature:

BLAST of Lag0011349 vs. NCBI nr


Match Name	E-value	Identity	Description
TYI22425.1	7.2e-11	32.26	hypothetical protein ES332_A06G102500v1 [Gossypium tomentosum]	[more]
TYG37159.1	9.4e-11	32.26	hypothetical protein ES288_D13G120000v1 [Gossypium darwinii]	[more]
KAB2005540.1	1.2e-10	33.87	hypothetical protein ES319_D11G277400v1 [Gossypium barbadense]	[more]
TYH88163.1	1.2e-10	33.61	hypothetical protein ES332_D01G168900v1 [Gossypium tomentosum]	[more]
TYG52543.1	2.7e-10	35.34	hypothetical protein ES288_D09G036700v1 [Gossypium darwinii]	[more]

BLAST of Lag0011349 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Lag0011349 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2Q4A4	3.5e-11	32.26	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_A06G102500v1 P...	[more]
A0A5D1ZYC3	4.6e-11	32.26	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D13G120000v1 PE=...	[more]
A0A5D2MA47	6.0e-11	33.61	Uncharacterized protein OS=Gossypium tomentosum OX=34277 GN=ES332_D01G168900v1 P...	[more]
A0A5J5PJ67	6.0e-11	33.87	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=ES319_D11G277400v1 PE...	[more]
A0A5D2B8V0	1.3e-10	35.34	Uncharacterized protein OS=Gossypium darwinii OX=34276 GN=ES288_D09G036700v1 PE=...	[more]

BLAST of Lag0011349 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 66..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..38
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..101

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011349.1	Lag0011349.1	mRNA