Lag0011344 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0011344
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Protein V2
Location	chr1: 22265887 .. 22266192 (-)
RNA-Seq Expression	Lag0011344
Synteny	Lag0011344

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCGATCCATTATTAAATCCCTTGCCCAACACTGTGCATGGACTACGTGTTATGTTGGCCGTTAAATATCTTCAATTTATTGAAGAAAAATACAGCCCAGATACTTTGGGCTTTGATCTGATAAGGGATTTAATTGCAGTTGTCCGTTGTCGTCTTTACAATGAGGCAACCTGTAGATTAACCGCGTACAACATTCGTCGGGATGGTGCGACGGATGTAGATCTTCAACGTCAAACTGTTGTTGTCTGTGCCTGTCCCCGCGTACAAAATTCTCTTCGTCTTTCCGTTCCTCTCTATCTTTAA

mRNA sequence

ATGTTCGATCCATTATTAAATCCCTTGCCCAACACTGTGCATGGACTACGTGTTATGTTGGCCGTTAAATATCTTCAATTTATTGAAGAAAAATACAGCCCAGATACTTTGGGCTTTGATCTGATAAGGGATTTAATTGCAGTTGTCCGTTGTCGTCTTTACAATGAGGCAACCTGTAGATTAACCGCGTACAACATTCGTCGGGATGGTGCGACGGATGTAGATCTTCAACGTCAAACTGTTGTTGTCTGTGCCTGTCCCCGCGTACAAAATTCTCTTCGTCTTTCCGTTCCTCTCTATCTTTAA

Coding sequence (CDS)

ATGTTCGATCCATTATTAAATCCCTTGCCCAACACTGTGCATGGACTACGTGTTATGTTGGCCGTTAAATATCTTCAATTTATTGAAGAAAAATACAGCCCAGATACTTTGGGCTTTGATCTGATAAGGGATTTAATTGCAGTTGTCCGTTGTCGTCTTTACAATGAGGCAACCTGTAGATTAACCGCGTACAACATTCGTCGGGATGGTGCGACGGATGTAGATCTTCAACGTCAAACTGTTGTTGTCTGTGCCTGTCCCCGCGTACAAAATTCTCTTCGTCTTTCCGTTCCTCTCTATCTTTAA

Protein sequence

MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCRLTAYNIRRDGATDVDLQRQTVVVCACPRVQNSLRLSVPLYL

Homology

[Close]

BLAST of Lag0011344 vs. NCBI nr
Match: AUX84056.1 (AV2 [Clerodendrum golden mosaic China virus])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCR 60
          M+DPL+N  P TVHGLR MLAVKYL+++E  YSPDTLG+DLIRDL+ V+R + Y EAT R
Sbjct: 11 MWDPLVNEFPETVHGLRCMLAVKYLKYVENTYSPDTLGYDLIRDLVLVIRAKNYGEATRR 70

Query: 61 LTAYNIRRDGATDVDLQRQTVVVCACP 88
             ++ R  G+T+V+L++     CACP
Sbjct: 71 YNHFHARLQGSTEVELRQPVSEQCACP 97

[Close]

BLAST of Lag0011344 vs. NCBI nr
Match: ALB26130.1 (pre-coat protein [Okra enation leaf curl virus])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 48/87 (55.17%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 1  MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCR 60
          M+DPLLN  P+TVHG R MLA+KYLQ + E+YSPDT+G+DLIRDLI+++RCR Y EA+CR
Sbjct: 1  MWDPLLNEFPDTVHGFRCMLAIKYLQQLSEEYSPDTVGYDLIRDLISILRCRNYVEASCR 60

Query: 61 LTAYNIRRDGATDVDLQRQTVVVCACP 88
             ++ R +GA+  +L++     C+CP
Sbjct: 61 YRHFHPRVEGASSTELRQPVFNPCSCP 87

[Close]

BLAST of Lag0011344 vs. NCBI nr
Match: CAZ40060.1 (AV2 protein [Clerodendrum golden mosaic China virus])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCR 60
          M+DPL+N  P TVHGLR MLAVKYL+++E  YSPDTLG+DLIRDL+ V+R + Y EAT R
Sbjct: 11 MWDPLVNEFPETVHGLRCMLAVKYLKYVENTYSPDTLGYDLIRDLVLVIRAKNYGEATRR 70

Query: 61 LTAYNIRRDGATDVDLQRQTVVVCACP 88
             ++ R  G+T+V+L++     CACP
Sbjct: 71 YNHFHARLQGSTEVELRQPVSEPCACP 97

[Close]

BLAST of Lag0011344 vs. NCBI nr
Match: AFF58886.1 (AV2 [Clerodendrum golden mosaic China virus])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCR 60
          M+DPL+N  P TVHGLR MLAVKYL+++E  YSPDTLG+DLIRDL+ V+R + Y EAT R
Sbjct: 11 MWDPLVNEFPETVHGLRCMLAVKYLKYVENTYSPDTLGYDLIRDLVLVIRAKNYGEATRR 70

Query: 61 LTAYNIRRDGATDVDLQRQTVVVCACP 88
             ++ R  G+T+V+L++     CACP
Sbjct: 71 YNHFHARLQGSTEVELRQPVSEPCACP 97

[Close]

BLAST of Lag0011344 vs. NCBI nr
Match: AUX84068.1 (AV2 [Clerodendrum golden mosaic China virus] >CAZ40050.1 AV2 protein [Clerodendrum golden mosaic China virus] >CAZ40058.1 AV2 protein [Clerodendrum golden mosaic China virus] >CBN08526.1 AV2 protein [Clerodendrum golden mosaic China virus])

HSP 1 Score: 110.2 bits (274), Expect = 1.1e-20
Identity = 49/87 (56.32%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 1  MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCR 60
          M+DPL+N  P TVHGLR MLAVKYL+++E  YSPDTLG+DLIRDL+ V+R + Y EAT R
Sbjct: 11 MWDPLVNEFPETVHGLRCMLAVKYLKYVENTYSPDTLGYDLIRDLVLVIRAKNYGEATRR 70

Query: 61 LTAYNIRRDGATDVDLQRQTVVVCACP 88
             ++ R  G+T+V+L++     CACP
Sbjct: 71 YNHFHARLQGSTEVELRQPVSEPCACP 97

[Close]

BLAST of Lag0011344 vs. ExPASy Swiss-Prot
Match: P61512 (Protein V2 OS=Tomato yellow leaf curl Sardinia virus (isolate Spain-1) OX=37139 GN=V2 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-22
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 0


Query: 1  MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCR 60
          M+DPLLN  P++VHGLR MLA+KYLQ +EE Y P+TLG DLIRDLI+V+R R Y EA  R
Sbjct: 1  MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRR 60

Query: 61 LTAYNIRRDGATDVDLQRQTVVVCACP 88
           T +N R +G++  +L++     C CP
Sbjct: 61 YTNFNARLEGSSKTELRQPVYQPCCCP 87

[Close]

BLAST of Lag0011344 vs. ExPASy Swiss-Prot
Match: P61511 (Protein V2 OS=Tomato yellow leaf curl Sardinia virus OX=123735 GN=V2 PE=3 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 3.5e-22
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = 0


Query: 1  MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCR 60
          M+DPLLN  P++VHGLR MLA+KYLQ +EE Y P+TLG DLIRDLI+V+R R Y EA  R
Sbjct: 1  MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRR 60

Query: 61 LTAYNIRRDGATDVDLQRQTVVVCACP 88
           T +N R +G++  +L++     C CP
Sbjct: 61 YTNFNARLEGSSKTELRQPVYQPCCCP 87

[Close]

BLAST of Lag0011344 vs. ExPASy Swiss-Prot
Match: Q9DXE9 (Protein V2 OS=Tomato yellow leaf curl China virus OX=185793 GN=V2 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.0e-21
Identity = 48/97 (49.48%), Postives = 64/97 (65.98%), Query Frame = 0


Query: 1  MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCR 60
          M+DPLLN  P TVHG R MLA+KYLQ +E  YSPDTLG+DLIRDLI+V+R R Y E + R
Sbjct: 1  MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARDYGETSRR 60

Query: 61 LTAYNIRRDGATDVDLQRQTVVVCACPRVQNSLRLSV 98
             ++ R +GA+  +L++     C CP      + +V
Sbjct: 61 YCHFHSRLEGASPAELRQPLYGSCCCPHCPRHQKTNV 97

[Close]

BLAST of Lag0011344 vs. ExPASy Swiss-Prot
Match: P27269 (Protein V2 OS=Tomato yellow leaf curl virus (strain Israel) OX=66366 GN=V2 PE=1 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-20
Identity = 47/87 (54.02%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 1  MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCR 60
          M+DPLLN  P +VHG R MLA+KYLQ +EE Y P+TLG DLIRDLI+VVR R Y EAT R
Sbjct: 1  MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDLISVVRARDYVEATRR 60

Query: 61 LTAYNIRRDGATDVDLQRQTVVVCACP 88
             ++ R +G+   +L++     C CP
Sbjct: 61 YNHFHARLEGSPKAELRQPIQQPCCCP 87

[Close]

BLAST of Lag0011344 vs. ExPASy Swiss-Prot
Match: Q08593 (Protein AV2 OS=Indian cassava mosaic virus OX=31600 GN=AV2 PE=3 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 7.3e-20
Identity = 46/87 (52.87%), Postives = 60/87 (68.97%), Query Frame = 0


Query: 1  MFDPLLNPLPNTVHGLRVMLAVKYLQFIEEKYSPDTLGFDLIRDLIAVVRCRLYNEATCR 60
          M+DPLLN  P +VHG R MLAVKYLQ +E  YSPDTLG+DLIRDL +V+R + Y EAT R
Sbjct: 1  MWDPLLNEFPESVHGFRCMLAVKYLQLVECTYSPDTLGYDLIRDLFSVIRAKNYVEATSR 60

Query: 61 LTAYNIRRDGATDVDLQRQTVVVCACP 88
             +  R +G++  +L++     C CP
Sbjct: 61 YHNFYSRLEGSSPSELRQPIQQPCGCP 87

The following BLAST results are available for this feature:

BLAST of Lag0011344 vs. NCBI nr


Match Name	E-value	Identity	Description
AUX84056.1	1.1e-20	56.32	AV2 [Clerodendrum golden mosaic China virus]	[more]
ALB26130.1	1.1e-20	55.17	pre-coat protein [Okra enation leaf curl virus]	[more]
CAZ40060.1	1.1e-20	56.32	AV2 protein [Clerodendrum golden mosaic China virus]	[more]
AFF58886.1	1.1e-20	56.32	AV2 [Clerodendrum golden mosaic China virus]	[more]
AUX84068.1	1.1e-20	56.32	AV2 [Clerodendrum golden mosaic China virus] >CAZ40050.1 AV2 protein [Clerodendr...	[more]

BLAST of Lag0011344 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P61512	3.5e-22	55.17	Protein V2 OS=Tomato yellow leaf curl Sardinia virus (isolate Spain-1) OX=37139 ...	[more]
P61511	3.5e-22	55.17	Protein V2 OS=Tomato yellow leaf curl Sardinia virus OX=123735 GN=V2 PE=3 SV=1	[more]
Q9DXE9	1.0e-21	49.48	Protein V2 OS=Tomato yellow leaf curl China virus OX=185793 GN=V2 PE=3 SV=1	[more]
P27269	2.5e-20	54.02	Protein V2 OS=Tomato yellow leaf curl virus (strain Israel) OX=66366 GN=V2 PE=1 ...	[more]
Q08593	7.3e-20	52.87	Protein AV2 OS=Indian cassava mosaic virus OX=31600 GN=AV2 PE=3 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002511	Geminivirus V2 protein	PFAM	PF01524	Gemini_V2	coord: 1..77 e-value: 4.5E-31 score: 106.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0011344.1	Lag0011344.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019048	modulation by virus of host process
biological_process	GO:0060967	negative regulation of gene silencing by RNA
cellular_component	GO:0030430	host cell cytoplasm