Lag0010640 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0010640
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionReverse transcriptase domain-containing protein
Locationchr1: 2691266 .. 2692129 (+)
RNA-Seq ExpressionLag0010640
SyntenyLag0010640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTTGTTCCCTTGGTAAGGGAATTTTATGCTAATGTTCAAGACAATGAACTCTTCCAAACCAAGGTGAGGGGAAAATGGATAGATTGGTCACCATCGACTATTAATGAGGTTTACAACCTTTCTAATTTCCCCCATGCGGTTTTCAACTCTATAGAGATTGCTCCATCTAAAGAGCAACTCTAATAAGCTCTAGAAACATGTGCAATTGAAGGAGCAAGTTGGAAAATGTCAAGGAACTCCATCTGAACACTGTTGGCATCTTACCTAAAGCCCGAGGCAAATGTATGGCATACCTTTGCAAGGAGTAGATTGCTCCCTACCACACATGACACCACTGTGTCCAAAGAAAGACCTCTTTTGGTTTTTTCCATCTTGAAGATTCTGAGCATTGATGTGGGGAGGCTTTTGGCAAAGGAGATTTTGGCGTGTGCAAAAAGGAAGGTAGGAAGGCTATTTTTCCCAAATCTTATTACAGCTTTGTGTTTAAAGGCTCAAGTTCAAGTGGATGAGGATGAAGAGATCTTAATGGACAAGGGTATAATTGATTCAGCATCTATAGCAAGGTTGCATGGGGTGAGTAAAGGGAGGTCAAGCAAAAATATGGTTTGTGGGGTTGAGGAGATTTTGAGGCAGCAGAGAAAAATGATGAGGCGAATGGAGCATAGTGAAAATCAGCAAAAGGCCTACTGGGAATACGCTCATCACAGAGACTCTGCCATGGAAAAGACATTTGAATATGGCTTTGAGGAACTTCCTCAGCCATTCCCTCAATTCCCCGCAAGTTTATTTGATCCATGGTACCCTTCCCCATCTCTAAGTGGGAATGATGATGATGTTGATGCTGATCAAGAAGATTGA

mRNA sequence

ATGGCTGTTGTTCCCTTGGTAAGGGAATTTTATGCTAATGTTCAAGACAATGAACTCTTCCAAACCAAGCCCGAGGCAAATGTATGGCATACCTTTGCAAGGAGTAGATTGCTCCCTACCACACATGACACCACTGTGTCCAAAGAAAGACCTCTTTTGGTTTTTTCCATCTTGAAGATTCTGAGCATTGATGTGGGGAGGCTTTTGGCAAAGGAGATTTTGGCGTGTGCAAAAAGGAAGGTAGGAAGGCTATTTTTCCCAAATCTTATTACAGCTTTGTGTTTAAAGGCTCAAGTTCAAGTGGATGAGGATGAAGAGATCTTAATGGACAAGGGTATAATTGATTCAGCATCTATAGCAAGGTTGCATGGGGTGAGTAAAGGGAGGTCAAGCAAAAATATGGTTTGTGGGGTTGAGGAGATTTTGAGGCAGCAGAGAAAAATGATGAGGCGAATGGAGCATAGTGAAAATCAGCAAAAGGCCTACTGGGAATACGCTCATCACAGAGACTCTGCCATGGAAAAGACATTTGAATATGGCTTTGAGGAACTTCCTCAGCCATTCCCTCAATTCCCCGCAAGTTTATTTGATCCATGGTACCCTTCCCCATCTCTAAGTGGGAATGATGATGATGTTGATGCTGATCAAGAAGATTGA

Coding sequence (CDS)

ATGGCTGTTGTTCCCTTGGTAAGGGAATTTTATGCTAATGTTCAAGACAATGAACTCTTCCAAACCAAGCCCGAGGCAAATGTATGGCATACCTTTGCAAGGAGTAGATTGCTCCCTACCACACATGACACCACTGTGTCCAAAGAAAGACCTCTTTTGGTTTTTTCCATCTTGAAGATTCTGAGCATTGATGTGGGGAGGCTTTTGGCAAAGGAGATTTTGGCGTGTGCAAAAAGGAAGGTAGGAAGGCTATTTTTCCCAAATCTTATTACAGCTTTGTGTTTAAAGGCTCAAGTTCAAGTGGATGAGGATGAAGAGATCTTAATGGACAAGGGTATAATTGATTCAGCATCTATAGCAAGGTTGCATGGGGTGAGTAAAGGGAGGTCAAGCAAAAATATGGTTTGTGGGGTTGAGGAGATTTTGAGGCAGCAGAGAAAAATGATGAGGCGAATGGAGCATAGTGAAAATCAGCAAAAGGCCTACTGGGAATACGCTCATCACAGAGACTCTGCCATGGAAAAGACATTTGAATATGGCTTTGAGGAACTTCCTCAGCCATTCCCTCAATTCCCCGCAAGTTTATTTGATCCATGGTACCCTTCCCCATCTCTAAGTGGGAATGATGATGATGTTGATGCTGATCAAGAAGATTGA

Protein sequence

MAVVPLVREFYANVQDNELFQTKPEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRLLAKEILACAKRKVGRLFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARLHGVSKGRSSKNMVCGVEEILRQQRKMMRRMEHSENQQKAYWEYAHHRDSAMEKTFEYGFEELPQPFPQFPASLFDPWYPSPSLSGNDDDVDADQED
Homology
BLAST of Lag0010640 vs. NCBI nr
Match: PON59596.1 (hypothetical protein PanWU01x14_158080 [Parasponia andersonii])

HSP 1 Score: 119.0 bits (297), Expect = 5.1e-23
Identity = 78/211 (36.97%), Postives = 115/211 (54.50%), Query Frame = 0

Query: 13  NVQDNELFQTK----PEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRL 72
           N+Q+  L   K    P A VW+ F +SRLLPTTH  TVSK+R LL++S+L   SI+VGR+
Sbjct: 28  NIQNRPLNAEKGALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGRM 87

Query: 73  LAKEILACAKRKVGRLFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARLHG---- 132
           +  EI ACA RK G LFFP+LIT LC  A+     +EE L   G ID+ ++AR+      
Sbjct: 88  IHSEIRACAARKSGALFFPSLITQLCRNARAPFLVNEEKLHITGEIDAIAVARITQEGQT 147

Query: 133 -------------VSKGRSSKNMVCGVEEILR-------QQRKMMRRMEHSENQQKAYWE 192
                         S  R++ +++  ++ + +       QQ  MM  ++H+  QQ+ +W 
Sbjct: 148 ELTQQPSTSRPTVASSSRANGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWA 207

Query: 193 YAHHRDSAMEKTFEYGFEELPQPFPQFPASL 196
           Y+  RD+A++K  +  F      FP FP  L
Sbjct: 208 YSKERDTALKKALQNNFTRPIPTFPTFPQEL 238

BLAST of Lag0010640 vs. NCBI nr
Match: PON46472.1 (hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii])

HSP 1 Score: 115.5 bits (288), Expect = 5.6e-22
Identity = 81/218 (37.16%), Postives = 116/218 (53.21%), Query Frame = 0

Query: 24  PEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRLLAKEILACAKRKVGR 83
           P A VW+ F +SRLLPTTH  TVSK+R LL+ S+L   SI+VGR++  EI ACA RK G 
Sbjct: 172 PAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGA 231

Query: 84  LFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARL------------HGVSKGRSS 143
           LFFP+LIT LC  A+     +EE L + G ID+ ++AR+                   +S
Sbjct: 232 LFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATAS 291

Query: 144 KNMVCG--------VEEILRQQR----KMMRRMEHSENQQKAYWEYAHHRDSAMEKTFEY 203
            N   G        +E+ L QQ      MM  ++H+  QQ+ +W Y+  RD+A++K  + 
Sbjct: 292 SNRTNGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQN 351

Query: 204 GFEELPQPFPQFPASLFDPWYPSPSLSGNDDDVDADQE 218
            F    +P P FPA      +P   L   D + +A+ +
Sbjct: 352 NF---TRPMPTFPA------FPQEILKDLDYEYEAESD 380

BLAST of Lag0010640 vs. NCBI nr
Match: PON78020.1 (hypothetical protein PanWU01x14_023740 [Parasponia andersonii])

HSP 1 Score: 113.2 bits (282), Expect = 2.8e-21
Identity = 76/207 (36.71%), Postives = 117/207 (56.52%), Query Frame = 0

Query: 24  PEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRLLAKEILACAKRKVGR 83
           P A VW+ F +SRLLPTTH   VSK+R LL+ S+L   SI+VGR++  EI ACA +K G 
Sbjct: 102 PAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGA 161

Query: 84  LFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARL------HGVSKGRSSKNMVCG 143
           LFFP+LIT LC  A   V+E++  L + G ID+ ++AR+          +  SS+     
Sbjct: 162 LFFPSLITRLCRNAPFLVNEEK--LHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAAS 221

Query: 144 VE----EILRQQRKMMRRM---EHSENQQKAYWEYAHHRDSAMEKTFEYGFEELPQPFPQ 203
                 ++L+Q + + +R+   EH+  QQ+ +W Y+  RD+A++K  +  F    +P P 
Sbjct: 222 SSRTNGDVLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNF---TRPIPT 281

Query: 204 FPASLFDPWYPSPSLSGNDDDVDADQE 218
           FPA      +P   L   D + +A+ +
Sbjct: 282 FPA------FPQEILQDLDYEYEAESD 297

BLAST of Lag0010640 vs. NCBI nr
Match: PON62892.1 (hypothetical protein PanWU01x14_135680 [Parasponia andersonii])

HSP 1 Score: 100.5 bits (249), Expect = 1.9e-17
Identity = 61/145 (42.07%), Postives = 86/145 (59.31%), Query Frame = 0

Query: 24  PEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRLLAKEILACAKRKVGR 83
           P A VW+ F +SRLLPTTH  TVSKER LL++S+L   SI+VG+++ +EI A A RK G 
Sbjct: 79  PPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYAARKSGA 138

Query: 84  LFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARL---------HGVSKGRSSKNM 143
           LFFP+LIT +C  A+     +EE L + G ID+ ++AR+         H  S  R +   
Sbjct: 139 LFFPSLITRMCCNARAPYLVNEEKLHNTGEIDAIAVARIAQEGPAEHSHRPSSSRPAAAS 198

Query: 144 VCGVEEILRQQRKMMRRMEHSENQQ 160
                E L+Q + + +R+   E QQ
Sbjct: 199 SSSTSETLQQLKSLEQRISQQEVQQ 223

BLAST of Lag0010640 vs. NCBI nr
Match: PON65869.1 (hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii])

HSP 1 Score: 97.1 bits (240), Expect = 2.1e-16
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 0

Query: 24  PEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRLLAKEILACAKRKVGR 83
           P A VW+ F +SRLLPTTH   VSKE  LL++S+L   SI+VGR++ +EI ACA RK G 
Sbjct: 10  PPAKVWYHFLKSRLLPTTHGKIVSKECVLLLYSMLTGKSINVGRIIHREICACAARKPGA 69

Query: 84  LFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARL 123
           LFFP+LIT +C  A+     +EE L + G ID+ ++AR+
Sbjct: 70  LFFPSLITRMCRNARAPYLVNEEKLHNTGEIDAIAVARI 108

BLAST of Lag0010640 vs. ExPASy TrEMBL
Match: A0A2P5CEY2 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 78/211 (36.97%), Postives = 115/211 (54.50%), Query Frame = 0

Query: 13  NVQDNELFQTK----PEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRL 72
           N+Q+  L   K    P A VW+ F +SRLLPTTH  TVSK+R LL++S+L   SI+VGR+
Sbjct: 28  NIQNRPLNAEKGALTPAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLYSMLTGKSINVGRM 87

Query: 73  LAKEILACAKRKVGRLFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARLHG---- 132
           +  EI ACA RK G LFFP+LIT LC  A+     +EE L   G ID+ ++AR+      
Sbjct: 88  IHSEIRACAARKSGALFFPSLITQLCRNARAPFLVNEEKLHITGEIDAIAVARITQEGQT 147

Query: 133 -------------VSKGRSSKNMVCGVEEILR-------QQRKMMRRMEHSENQQKAYWE 192
                         S  R++ +++  ++ + +       QQ  MM  ++H+  QQ+ +W 
Sbjct: 148 ELTQQPSTSRPTVASSSRANGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWA 207

Query: 193 YAHHRDSAMEKTFEYGFEELPQPFPQFPASL 196
           Y+  RD+A++K  +  F      FP FP  L
Sbjct: 208 YSKERDTALKKALQNNFTRPIPTFPTFPQEL 238

BLAST of Lag0010640 vs. ExPASy TrEMBL
Match: A0A2P5BCG4 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_251180 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 2.7e-22
Identity = 81/218 (37.16%), Postives = 116/218 (53.21%), Query Frame = 0

Query: 24  PEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRLLAKEILACAKRKVGR 83
           P A VW+ F +SRLLPTTH  TVSK+R LL+ S+L   SI+VGR++  EI ACA RK G 
Sbjct: 172 PAAKVWYHFLKSRLLPTTHGKTVSKDRMLLLHSMLIGKSINVGRMIHSEIRACAARKTGA 231

Query: 84  LFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARL------------HGVSKGRSS 143
           LFFP+LIT LC  A+     +EE L + G ID+ ++AR+                   +S
Sbjct: 232 LFFPSLITRLCRNARAPFLVNEEKLHNTGEIDAIAVARIAQEGPTESTQQPSSSRPATAS 291

Query: 144 KNMVCG--------VEEILRQQR----KMMRRMEHSENQQKAYWEYAHHRDSAMEKTFEY 203
            N   G        +E+ L QQ      MM  ++H+  QQ+ +W Y+  RD+A++K  + 
Sbjct: 292 SNRTNGDILQQLKALEQRLSQQEVQQYHMMSLLQHTHKQQQQFWAYSKERDTALKKALQN 351

Query: 204 GFEELPQPFPQFPASLFDPWYPSPSLSGNDDDVDADQE 218
            F    +P P FPA      +P   L   D + +A+ +
Sbjct: 352 NF---TRPMPTFPA------FPQEILKDLDYEYEAESD 380

BLAST of Lag0010640 vs. ExPASy TrEMBL
Match: A0A2P5DXM3 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.3e-21
Identity = 76/207 (36.71%), Postives = 117/207 (56.52%), Query Frame = 0

Query: 24  PEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRLLAKEILACAKRKVGR 83
           P A VW+ F +SRLLPTTH   VSK+R LL+ S+L   SI+VGR++  EI ACA +K G 
Sbjct: 102 PAAKVWYHFLKSRLLPTTHGKIVSKDRMLLLHSMLNGKSINVGRMIHSEIRACAAQKTGA 161

Query: 84  LFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARL------HGVSKGRSSKNMVCG 143
           LFFP+LIT LC  A   V+E++  L + G ID+ ++AR+          +  SS+     
Sbjct: 162 LFFPSLITRLCRNAPFLVNEEK--LHNTGEIDAIAVARITQEGPTESTQQPSSSRPAAAS 221

Query: 144 VE----EILRQQRKMMRRM---EHSENQQKAYWEYAHHRDSAMEKTFEYGFEELPQPFPQ 203
                 ++L+Q + + +R+   EH+  QQ+ +W Y+  RD+A++K  +  F    +P P 
Sbjct: 222 SSRTNGDVLQQLKALEQRLSQQEHTHKQQQQFWAYSKERDTALKKALQNNF---TRPIPT 281

Query: 204 FPASLFDPWYPSPSLSGNDDDVDADQE 218
           FPA      +P   L   D + +A+ +
Sbjct: 282 FPA------FPQEILQDLDYEYEAESD 297

BLAST of Lag0010640 vs. ExPASy TrEMBL
Match: A0A2P5CPE8 (Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 9.0e-18
Identity = 61/145 (42.07%), Postives = 86/145 (59.31%), Query Frame = 0

Query: 24  PEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRLLAKEILACAKRKVGR 83
           P A VW+ F +SRLLPTTH  TVSKER LL++S+L   SI+VG+++ +EI A A RK G 
Sbjct: 79  PPAKVWYHFLKSRLLPTTHGKTVSKERVLLLYSMLTGKSINVGQIIHREICAYAARKSGA 138

Query: 84  LFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARL---------HGVSKGRSSKNM 143
           LFFP+LIT +C  A+     +EE L + G ID+ ++AR+         H  S  R +   
Sbjct: 139 LFFPSLITRMCCNARAPYLVNEEKLHNTGEIDAIAVARIAQEGPAEHSHRPSSSRPAAAS 198

Query: 144 VCGVEEILRQQRKMMRRMEHSENQQ 160
                E L+Q + + +R+   E QQ
Sbjct: 199 SSSTSETLQQLKSLEQRISQQEVQQ 223

BLAST of Lag0010640 vs. ExPASy TrEMBL
Match: A0A2P5CXU3 (Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x14_113580 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.0e-16
Identity = 51/99 (51.52%), Postives = 69/99 (69.70%), Query Frame = 0

Query: 24  PEANVWHTFARSRLLPTTHDTTVSKERPLLVFSILKILSIDVGRLLAKEILACAKRKVGR 83
           P A VW+ F +SRLLPTTH   VSKE  LL++S+L   SI+VGR++ +EI ACA RK G 
Sbjct: 10  PPAKVWYHFLKSRLLPTTHGKIVSKECVLLLYSMLTGKSINVGRIIHREICACAARKPGA 69

Query: 84  LFFPNLITALCLKAQVQVDEDEEILMDKGIIDSASIARL 123
           LFFP+LIT +C  A+     +EE L + G ID+ ++AR+
Sbjct: 70  LFFPSLITRMCRNARAPYLVNEEKLHNTGEIDAIAVARI 108

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PON59596.15.1e-2336.97hypothetical protein PanWU01x14_158080 [Parasponia andersonii][more]
PON46472.15.6e-2237.16hypothetical protein PanWU01x14_251180, partial [Parasponia andersonii][more]
PON78020.12.8e-2136.71hypothetical protein PanWU01x14_023740 [Parasponia andersonii][more]
PON62892.11.9e-1742.07hypothetical protein PanWU01x14_135680 [Parasponia andersonii][more]
PON65869.12.1e-1651.52hypothetical protein PanWU01x14_113580, partial [Parasponia andersonii][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2P5CEY22.4e-2336.97Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_158080 PE... [more]
A0A2P5BCG42.7e-2237.16Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
A0A2P5DXM31.3e-2136.71Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_023740 PE... [more]
A0A2P5CPE89.0e-1842.07Uncharacterized protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_135680 PE... [more]
A0A2P5CXU31.0e-1651.52Uncharacterized protein (Fragment) OS=Parasponia andersonii OX=3476 GN=PanWU01x1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 138..158
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..218

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0010640.1Lag0010640.1mRNA