Lag0010635 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0010635
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chr1: 2630642 .. 2631073 (+)
RNA-Seq Expression	Lag0010635
Synteny	Lag0010635

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTGATTTGCTCTGTCGAGCTGGACTGTTGGAGGAAGCTGTGGAGTTGGCAAGGACCATGCCAATGAAGCCTGATGTGCTCATCTGGGGAGTGCTACTAAATGCTTGCAAAACTGTTGGAAATCTTGAGCTCTCTCAACACATACAAGATTACATCTTGGAACTTGATCCAGAGGATAGTGGAGTCTTCGTGCTGCTGTCCAATATATCTGCTACTAATGAAAGATGGTCCGATGTGACTCGATTAAGGAGGTTGATGAAGGATAGAGGTGTGAAAAAAGCACCTGGGTCAAGTGTCATTGAGGTGGATGGTAAGGCTCACGAGTTTGTGGTTGGAGATATTAGCCACCTCCAAACTGAAGAAATCTACAAGCTGTTAAACCTCATTAACTCTGTCTACCATGAAAGCCATTTGATGCATTTATCGTAG

mRNA sequence

ATGATTGATTTGCTCTGTCGAGCTGGACTGTTGGAGGAAGCTGTGGAGTTGGCAAGGACCATGCCAATGAAGCCTGATGTGCTCATCTGGGGAGTGCTACTAAATGCTTGCAAAACTGTTGGAAATCTTGAGCTCTCTCAACACATACAAGATTACATCTTGGAACTTGATCCAGAGGATAGTGGAGTCTTCGTGCTGCTGTCCAATATATCTGCTACTAATGAAAGATGGTCCGATGTGACTCGATTAAGGAGGTTGATGAAGGATAGAGGTGTGAAAAAAGCACCTGGGTCAAGTGTCATTGAGGTGGATGGTAAGGCTCACGAGTTTGTGGTTGGAGATATTAGCCACCTCCAAACTGAAGAAATCTACAAGCTGTTAAACCTCATTAACTCTGTCTACCATGAAAGCCATTTGATGCATTTATCGTAG

Coding sequence (CDS)

ATGATTGATTTGCTCTGTCGAGCTGGACTGTTGGAGGAAGCTGTGGAGTTGGCAAGGACCATGCCAATGAAGCCTGATGTGCTCATCTGGGGAGTGCTACTAAATGCTTGCAAAACTGTTGGAAATCTTGAGCTCTCTCAACACATACAAGATTACATCTTGGAACTTGATCCAGAGGATAGTGGAGTCTTCGTGCTGCTGTCCAATATATCTGCTACTAATGAAAGATGGTCCGATGTGACTCGATTAAGGAGGTTGATGAAGGATAGAGGTGTGAAAAAAGCACCTGGGTCAAGTGTCATTGAGGTGGATGGTAAGGCTCACGAGTTTGTGGTTGGAGATATTAGCCACCTCCAAACTGAAGAAATCTACAAGCTGTTAAACCTCATTAACTCTGTCTACCATGAAAGCCATTTGATGCATTTATCGTAG

Protein sequence

MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNLELSQHIQDYILELDPEDSGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIEVDGKAHEFVVGDISHLQTEEIYKLLNLINSVYHESHLMHLS

Homology

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BLAST of Lag0010635 vs. NCBI nr
Match: XP_022968020.1 (pentatricopeptide repeat-containing protein At4g38010 isoform X2 [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 6.4e-67
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNLELSQHIQDYILELDPED 60
           MIDL CRAGLLEEAVEL RTMPMKPDVLIWGVLLNACKTVGN+ELSQHIQ+YILELDPED
Sbjct: 396 MIDLFCRAGLLEEAVELVRTMPMKPDVLIWGVLLNACKTVGNVELSQHIQEYILELDPED 455

Query: 61  SGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIEVDGKAHEFVVGDISHLQT 120
           SGVFVLLSNISATNERWS+VTRLRRLMKDRGVKK+PGSSVIEVDGKAHEFV GDIS+LQT
Sbjct: 456 SGVFVLLSNISATNERWSNVTRLRRLMKDRGVKKSPGSSVIEVDGKAHEFVAGDISNLQT 515

Query: 121 EEIYKLLNLINSVYHESHLMH 142
           EEIYK+L LINSV+HESHLMH
Sbjct: 516 EEIYKVLTLINSVFHESHLMH 536

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BLAST of Lag0010635 vs. NCBI nr
Match: XP_022968019.1 (pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucurbita maxima])

HSP 1 Score: 264.2 bits (674), Expect = 6.4e-67
Identity = 130/141 (92.20%), Postives = 137/141 (97.16%), Query Frame = 0


Query: 1   MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNLELSQHIQDYILELDPED 60
           MIDL CRAGLLEEAVEL RTMPMKPDVLIWGVLLNACKTVGN+ELSQHIQ+YILELDPED
Sbjct: 447 MIDLFCRAGLLEEAVELVRTMPMKPDVLIWGVLLNACKTVGNVELSQHIQEYILELDPED 506

Query: 61  SGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIEVDGKAHEFVVGDISHLQT 120
           SGVFVLLSNISATNERWS+VTRLRRLMKDRGVKK+PGSSVIEVDGKAHEFV GDIS+LQT
Sbjct: 507 SGVFVLLSNISATNERWSNVTRLRRLMKDRGVKKSPGSSVIEVDGKAHEFVAGDISNLQT 566

Query: 121 EEIYKLLNLINSVYHESHLMH 142
           EEIYK+L LINSV+HESHLMH
Sbjct: 567 EEIYKVLTLINSVFHESHLMH 587

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BLAST of Lag0010635 vs. NCBI nr
Match: XP_038889932.1 (pentatricopeptide repeat-containing protein At4g38010 [Benincasa hispida] >XP_038889934.1 pentatricopeptide repeat-containing protein At4g38010 [Benincasa hispida] >XP_038889935.1 pentatricopeptide repeat-containing protein At4g38010 [Benincasa hispida] >XP_038889936.1 pentatricopeptide repeat-containing protein At4g38010 [Benincasa hispida] >XP_038889937.1 pentatricopeptide repeat-containing protein At4g38010 [Benincasa hispida] >XP_038889938.1 pentatricopeptide repeat-containing protein At4g38010 [Benincasa hispida] >XP_038889939.1 pentatricopeptide repeat-containing protein At4g38010 [Benincasa hispida] >XP_038889940.1 pentatricopeptide repeat-containing protein At4g38010 [Benincasa hispida] >XP_038889941.1 pentatricopeptide repeat-containing protein At4g38010 [Benincasa hispida])

HSP 1 Score: 260.0 bits (663), Expect = 1.2e-65
Identity = 128/138 (92.75%), Postives = 134/138 (97.10%), Query Frame = 0


Query: 1   MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNLELSQHIQDYILELDPED 60
           MIDL CRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGN++LS HI+DYILELDPED
Sbjct: 446 MIDLFCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNVDLSHHIRDYILELDPED 505

Query: 61  SGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIEVDGKAHEFVVGDISHLQT 120
           SGVFVLLSNISATNERWSDV RLRRLMKDRGV+KAPGSSVIEVDGKAHEFV GDISHLQT
Sbjct: 506 SGVFVLLSNISATNERWSDVIRLRRLMKDRGVEKAPGSSVIEVDGKAHEFVAGDISHLQT 565

Query: 121 EEIYKLLNLINSVYHESH 139
           +EIYKLL+LINSVYHESH
Sbjct: 566 KEIYKLLSLINSVYHESH 583

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BLAST of Lag0010635 vs. NCBI nr
Match: XP_023541468.1 (pentatricopeptide repeat-containing protein At4g38010 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 128/141 (90.78%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNLELSQHIQDYILELDPED 60
           MIDL CRAGLLEEAVEL RTMPMKPDVLIWGVLLNACKTVGN+ELSQHIQ+YILELDPED
Sbjct: 415 MIDLFCRAGLLEEAVELVRTMPMKPDVLIWGVLLNACKTVGNVELSQHIQEYILELDPED 474

Query: 61  SGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIEVDGKAHEFVVGDISHLQT 120
           SGVFVLLSNISATNERWS+VTRLRRLMKDRGVKK+PGSSVIEVDGKAHEFV GDIS L+ 
Sbjct: 475 SGVFVLLSNISATNERWSNVTRLRRLMKDRGVKKSPGSSVIEVDGKAHEFVAGDISTLEI 534

Query: 121 EEIYKLLNLINSVYHESHLMH 142
           EEIYK+L LINSV+HESHLMH
Sbjct: 535 EEIYKVLTLINSVFHESHLMH 555

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BLAST of Lag0010635 vs. NCBI nr
Match: XP_023541467.1 (pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 259.6 bits (662), Expect = 1.6e-65
Identity = 128/141 (90.78%), Postives = 135/141 (95.74%), Query Frame = 0


Query: 1   MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNLELSQHIQDYILELDPED 60
           MIDL CRAGLLEEAVEL RTMPMKPDVLIWGVLLNACKTVGN+ELSQHIQ+YILELDPED
Sbjct: 442 MIDLFCRAGLLEEAVELVRTMPMKPDVLIWGVLLNACKTVGNVELSQHIQEYILELDPED 501

Query: 61  SGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIEVDGKAHEFVVGDISHLQT 120
           SGVFVLLSNISATNERWS+VTRLRRLMKDRGVKK+PGSSVIEVDGKAHEFV GDIS L+ 
Sbjct: 502 SGVFVLLSNISATNERWSNVTRLRRLMKDRGVKKSPGSSVIEVDGKAHEFVAGDISTLEI 561

Query: 121 EEIYKLLNLINSVYHESHLMH 142
           EEIYK+L LINSV+HESHLMH
Sbjct: 562 EEIYKVLTLINSVFHESHLMH 582

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BLAST of Lag0010635 vs. ExPASy Swiss-Prot
Match: Q9SY02 (Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H24 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-30
Identity = 65/127 (51.18%), Postives = 87/127 (68.50%), Query Frame = 0


Query: 1   MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNLELSQHIQDYILELDPED 60
           M+DLL RAGLLE+A  L + MP +PD  IWG LL A +  GN EL++   D I  ++PE+
Sbjct: 552 MVDLLGRAGLLEDAHNLMKNMPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPEN 611

Query: 61  SGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIEVDGKAHEFVVGDISHLQT 120
           SG++VLLSN+ A++ RW DV +LR  M+D+GVKK PG S IE+  K H F VGD  H + 
Sbjct: 612 SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGVKKVPGYSWIEIQNKTHTFSVGDEFHPEK 671

Query: 121 EEIYKLL 128
           +EI+  L
Sbjct: 672 DEIFAFL 678

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BLAST of Lag0010635 vs. ExPASy Swiss-Prot
Match: Q9SIL5 (Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E78 PE=2 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 2.9e-30
Identity = 66/132 (50.00%), Postives = 93/132 (70.45%), Query Frame = 0


Query: 1   MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNLELSQHIQDYILELDPED 60
           +ID+L RAG LE AVE+ +TMPMKPD  IWG LL++C+T GNL+++    D+++EL+PED
Sbjct: 384 LIDVLARAGKLERAVEITKTMPMKPDSKIWGSLLSSCRTPGNLDVALVAMDHLVELEPED 443

Query: 61  SGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIEVDGKAHEFVVGDISHLQT 120
            G +VLL+NI A   +W DV+RLR+++++  +KK PG S+IEV+    EFV GD S    
Sbjct: 444 MGNYVLLANIYADLGKWEDVSRLRKMIRNENMKKTPGGSLIEVNNIVQEFVSGDNSKPFW 503

Query: 121 EEIYKLLNLINS 133
            EI  +L L  S
Sbjct: 504 TEISIVLQLFTS 515

[Close]

BLAST of Lag0010635 vs. ExPASy Swiss-Prot
Match: A8MQA3 (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-29
Identity = 64/144 (44.44%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 1   MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNLELSQHIQDYILELDPED 60
           M+DLL RAG +++A E  ++MPM+P+V+IW  LL AC   G+ +L++  +  IL+L+P  
Sbjct: 366 MVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNH 425

Query: 61  SGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIEVDGKAHEFVVGDISHLQT 120
           SG +VLLSN+ A+ +RWSDV ++R+ M   GVKK PG S++EV  + HEF++GD SH Q+
Sbjct: 426 SGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQS 485

Query: 121 EEIY-KLLNLINSVYHESHLMHLS 144
           + IY KL  +   +  E ++  +S
Sbjct: 486 DAIYAKLKEMTGRLRSEGYVPQIS 509

[Close]

BLAST of Lag0010635 vs. ExPASy Swiss-Prot
Match: Q9SZK1 (Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E45 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 3.2e-29
Identity = 65/103 (63.11%), Postives = 79/103 (76.70%), Query Frame = 0


Query: 1   MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNL-ELSQHIQDYILELDPE 60
           MIDLLCRAGLL+EA+EL + MP+KPDV I G +L+ACK  G L EL + I D  L+++ E
Sbjct: 450 MIDLLCRAGLLDEALELVKAMPVKPDVRICGAILSACKNRGTLMELPKEILDSFLDIEFE 509

Query: 61  DSGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIE 103
           DSGV+VLLSNI A N RW DV R+RRLMK +G+ K PGSS IE
Sbjct: 510 DSGVYVLLSNIFAANRRWDDVARIRRLMKVKGISKVPGSSYIE 552

[Close]

BLAST of Lag0010635 vs. ExPASy Swiss-Prot
Match: Q9LUJ2 (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H56 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 4.2e-29
Identity = 65/142 (45.77%), Postives = 97/142 (68.31%), Query Frame = 0


Query: 1   MIDLLCRAGLLEEAVELARTMPMKPDVLIWGVLLNACKTVGNLELSQHIQDYILELDPED 60
           M+DLL RAGLLEEAV+L   MPM+P+ +IW  LL AC+  GN+E++ +  + I  L PE 
Sbjct: 613 MVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKIQVLAPER 672

Query: 61  SGVFVLLSNISATNERWSDVTRLRRLMKDRGVKKAPGSSVIEVDGKAHEFVVGDISHLQT 120
           +G +VLLSN+ A+  RW+D+ ++R  MK++G++K PG+S I++ GK HEF  GD SH + 
Sbjct: 673 TGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEM 732

Query: 121 EEIYKLLNLINSVYHESHLMHL 143
             I  +L+ ++     SHL H+
Sbjct: 733 PNIEAMLDEVSQ--RASHLGHV 752

The following BLAST results are available for this feature:

BLAST of Lag0010635 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022968020.1	6.4e-67	92.20	pentatricopeptide repeat-containing protein At4g38010 isoform X2 [Cucurbita maxi...	[more]
XP_022968019.1	6.4e-67	92.20	pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucurbita maxi...	[more]
XP_038889932.1	1.2e-65	92.75	pentatricopeptide repeat-containing protein At4g38010 [Benincasa hispida] >XP_03...	[more]
XP_023541468.1	1.6e-65	90.78	pentatricopeptide repeat-containing protein At4g38010 isoform X2 [Cucurbita pepo...	[more]
XP_023541467.1	1.6e-65	90.78	pentatricopeptide repeat-containing protein At4g38010 isoform X1 [Cucurbita pepo...	[more]

BLAST of Lag0010635 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SY02	1.7e-30	51.18	Pentatricopeptide repeat-containing protein At4g02750 OS=Arabidopsis thaliana OX...	[more]
Q9SIL5	2.9e-30	50.00	Pentatricopeptide repeat-containing protein At2g20540 OS=Arabidopsis thaliana OX...	[more]
A8MQA3	3.2e-29	44.44	Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana OX...	[more]
Q9SZK1	3.2e-29	63.11	Pentatricopeptide repeat-containing protein At4g38010 OS=Arabidopsis thaliana OX...	[more]
Q9LUJ2	4.2e-29	45.77	Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana OX...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..117 e-value: 9.5E-10 score: 40.3
None	No IPR available	PANTHER	PTHR47928:SF62	OS04G0488200 PROTEIN	coord: 1..135
None	No IPR available	PANTHER	PTHR47928	REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED	coord: 1..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0010635.1	Lag0010635.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding