Lag0010630 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0010630
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr1: 2520757 .. 2521511 (-)
RNA-Seq ExpressionLag0010630
SyntenyLag0010630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAACTCACAGAACAATGGCAAAATATGTCGTTGACGGAGGAGGAAGCAGTGGCGATACCTGTGCCAGCGTCTATTCCTCTACTACATGAATCAACGATTCAGGTATGTGCTGTGGGAAAGGTTCTCTCAAGTCAGTTTGTGAATTCGGATGCCCTTCGTAATGTGATGTTGTCAATATGGAATGTTCACCGTGTGACTAGAATTGAGCCCTTGGGAGAAAACATTTTTGTCATCTGATTTTATTCCATCTCTGAGAAGATTCGAGTGATGAAATCTCGGCGTGGACCTTCGATAAGGCGTTGTTTATCCTAGTGTCTCCTTTGGGATCAAATAGTCTGTCTCTTCTTGATTTTTCCCGGTGTGCCTTTTGGGTACAGATAAACAAGGTTCCTCTGAATTTTCTTTCTTCTGCAATGGCTCGAACGTTAGGCGGTGCTCTGGGTGCTGTTGAGGGAGTTTTTGGGGAAGGACATGGGGACTGGATAGGATCAGTTATGAGAGTTCGGATTGTCATTGATGTTACGAAGCCTTTGCGGCGTGTTGTCCGGCTACAGGTTAGTAGTGATAATTTTTTGATGTGCCTCATTCAGTATGAAAGATTACCATATTTTTTTTTTGTTGTGGTTGTATTGGTCAATCTCATCGGGAATGTCTTGTTCTGGATCCGAATATTGGTGTCAATGGCTTGTTTCCTTATGGTGATTGGTTACGTGCTACACCACTTCGTCGTCCGAGACCGAGAGGGGTAG

mRNA sequence

ATGGATGAACTCACAGAACAATGGCAAAATATGTCGTTGACGGAGGAGGAAGCAGTGGCGATACCTGTGCCAGCGTCTATTCCTCTACTACATGAATCAACGATTCAGATAAACAAGGTTCCTCTGAATTTTCTTTCTTCTGCAATGGCTCGAACGTTAGGCGGTGCTCTGGGTGCTGTTGAGGGAGTTTTTGGGGAAGGACATGGGGACTGGATAGGATCAGTTATGAGAGTTCGGATTGTCATTGATGTTACGAAGCCTTTGCGGCGTGTTGTCCGGCTACAGGTTAGTAGTGATAATTTTTTGATGTGCCTCATTCAGTATGAAAGATTACCATATTTTTTTTTTGTTGTGGTTGTATTGGTCAATCTCATCGGGAATGTCTTGTTCTGGATCCGAATATTGGTGTCAATGGCTTGTTTCCTTATGGTGATTGGTTACGTGCTACACCACTTCGTCGTCCGAGACCGAGAGGGGTAG

Coding sequence (CDS)

ATGGATGAACTCACAGAACAATGGCAAAATATGTCGTTGACGGAGGAGGAAGCAGTGGCGATACCTGTGCCAGCGTCTATTCCTCTACTACATGAATCAACGATTCAGATAAACAAGGTTCCTCTGAATTTTCTTTCTTCTGCAATGGCTCGAACGTTAGGCGGTGCTCTGGGTGCTGTTGAGGGAGTTTTTGGGGAAGGACATGGGGACTGGATAGGATCAGTTATGAGAGTTCGGATTGTCATTGATGTTACGAAGCCTTTGCGGCGTGTTGTCCGGCTACAGGTTAGTAGTGATAATTTTTTGATGTGCCTCATTCAGTATGAAAGATTACCATATTTTTTTTTTGTTGTGGTTGTATTGGTCAATCTCATCGGGAATGTCTTGTTCTGGATCCGAATATTGGTGTCAATGGCTTGTTTCCTTATGGTGATTGGTTACGTGCTACACCACTTCGTCGTCCGAGACCGAGAGGGGTAG

Protein sequence

MDELTEQWQNMSLTEEEAVAIPVPASIPLLHESTIQINKVPLNFLSSAMARTLGGALGAVEGVFGEGHGDWIGSVMRVRIVIDVTKPLRRVVRLQVSSDNFLMCLIQYERLPYFFFVVVVLVNLIGNVLFWIRILVSMACFLMVIGYVLHHFVVRDREG
Homology
BLAST of Lag0010630 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-09
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = 0

Query: 35  IQINKVPLNFLSSAMARTLGGALGAVEGVFGEGHGDWIGSVMRVRIVIDVTKPLRRVVRL 94
           IQI+ +P   +S+ MA  LG  LG VE + G+G   W G  +RVR+ IDV+KPLRR ++L
Sbjct: 127 IQIHNIPFECISTEMANILGAKLGDVEEIEGDGADGWAGPFIRVRVKIDVSKPLRRGIKL 186

Query: 95  QVSSDNFLMCLIQYERLPYFFF 117
           + S    + C ++YE+LP F +
Sbjct: 187 KNSDGKDIWCPLRYEKLPDFCY 208

BLAST of Lag0010630 vs. NCBI nr
Match: TXG50019.1 (hypothetical protein EZV62_025894 [Acer yangbiense])

HSP 1 Score: 71.2 bits (173), Expect = 8.8e-09
Identity = 38/79 (48.10%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 35  IQINKVPLNFLSSAMARTLGGALGAVEGVFGEGHGDWIGSVMRVRIVIDVTKPLRRVVRL 94
           IQI+KVPL  ++S + R LG  +G V+ +   G GD +G  +RVR+V+DVTKPLRR++R+
Sbjct: 129 IQIHKVPLLCMTSEIGRFLGSMIGEVKEIDDGGSGDCVGKYIRVRVVVDVTKPLRRMLRV 188

Query: 95  QVSSD-NFLMCLIQYERLP 113
            V  D      L++YERLP
Sbjct: 189 DVLGDGKETNMLLRYERLP 207

BLAST of Lag0010630 vs. NCBI nr
Match: TXG49522.1 (hypothetical protein EZV62_025397 [Acer yangbiense])

HSP 1 Score: 68.2 bits (165), Expect = 7.5e-08
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 0

Query: 35  IQINKVPLNFLSSAMARTLGGALGAVEGVFGEGHGDWIGSVMRVRIVIDVTKPLRRVVRL 94
           IQI+KVPL  ++S + R LG  +G V+ +   G GD +G  + VR+V+DVTKPLRR++R+
Sbjct: 129 IQIHKVPLLCMTSEIGRFLGSMIGEVKEIDDGGSGDCVGKYIWVRVVVDVTKPLRRMLRV 188

Query: 95  QVSSD-NFLMCLIQYERLP 113
            V  D      L++YERLP
Sbjct: 189 DVLGDGKETNMLLRYERLP 207

BLAST of Lag0010630 vs. NCBI nr
Match: XP_021802783.1 (uncharacterized protein LOC110746864, partial [Prunus avium])

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-07
Identity = 39/102 (38.24%), Postives = 62/102 (60.78%), Query Frame = 0

Query: 17  EAVAIPVPASIPLLHES-TIQINKVPLNFLSSAMARTLGGALGAVEGVFGEGHGDWIGSV 76
           E   + VPA IPL  ++  ++I+ +P  FL+  M   LGG +G V  V  + HG  +G  
Sbjct: 108 EVPDLAVPALIPLQTQAFWVRIHGLPAQFLTRIMGEELGGTMGTVLTVNCDRHGICMGDY 167

Query: 77  MRVRIVIDVTKPLRRVVRLQVSS---DNFLMCLIQYERLPYF 115
           +RVR+V+D++ PLRR +++++ S      L  L+QYERLP +
Sbjct: 168 LRVRVVLDISLPLRRGLQVRLPSPDGSEALWLLLQYERLPSY 209

BLAST of Lag0010630 vs. NCBI nr
Match: TXG52368.1 (hypothetical protein EZV62_021537 [Acer yangbiense])

HSP 1 Score: 65.1 bits (157), Expect = 6.3e-07
Identity = 37/111 (33.33%), Postives = 64/111 (57.66%), Query Frame = 0

Query: 8   WQNMSLTEEEAVAIPVPASIPLLH-ESTIQINKVPLNFLSSAMARTLGGALGAVEGVFGE 67
           + N+ +  E+ V +    S+   H +  +QI+K+P+  ++  + R LG  +G V  + G 
Sbjct: 45  FDNVLMVLEKPVGMSTIESLKFSHADFWVQIHKIPILCMTKEIGRFLGSMIGEVLDIDGG 104

Query: 68  GHGDWIGSVMRVRIVIDVTKPLRRVVRLQVSSDNF-LMCLIQYERLPYFFF 117
             GD +G  MRVRI +D+TKPL+R +R+ +  D    + +++YERLP   F
Sbjct: 105 NSGDCVGKFMRVRIRMDITKPLKRCLRVDIMGDGTETIMILRYERLPNHCF 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022149484.13.0e-0943.90uncharacterized protein LOC111017902 [Momordica charantia][more]
TXG50019.18.8e-0948.10hypothetical protein EZV62_025894 [Acer yangbiense][more]
TXG49522.17.5e-0846.84hypothetical protein EZV62_025397 [Acer yangbiense][more]
XP_021802783.16.3e-0738.24uncharacterized protein LOC110746864, partial [Prunus avium][more]
TXG52368.16.3e-0733.33hypothetical protein EZV62_021537 [Acer yangbiense][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0010630.1Lag0010630.1mRNA