Lag0010626 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0010626
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionTransposon TX1 uncharacterized 149 kDa protein
Locationchr1: 2486155 .. 2486520 (+)
RNA-Seq ExpressionLag0010626
SyntenyLag0010626
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTATCCAAAGCTGAAATGGAAGGTGAAATAAAGGGCTTTCATGTGGGTGGTGGTGACATTTGTATTAATCACATTCAGTTTGCAGATGACACTATCTTTTTTTTTTTTTTTTTTTTTTCTGATTTTGAAGATGAATCATCCCTTCAGTGTTTGCTATCAGTGATAGGCGCCTTTGAAAATATGTCGGGTCATAATATCAATCTTCATAAATCAGAAATCATTGGGATAAATGTGGGGCATGATACCATCCAGGATCTTGCTAAAAAATTATGGCTGCAAAATAGGAACTTGGCCCAACTCTTATTTAGGGCTCCCCTTAAATGGGTTTCCCAGGACCTTATCTTTTTGGAATCCTATTATTGA

mRNA sequence

ATGTTATCCAAAGCTGAAATGGAAGGTGAAATAAAGGGCTTTCATGTGGGTGGTGGTGACATTTGTATTAATCACATTCAGTTTGCAGATGACACTATCTTTTTTTTTTTTTTTTTTTTTTCTGATTTTGAAGATGAATCATCCCTTCAGTGTTTGCTATCAGTGATAGGCGCCTTTGAAAATATGTCGGGTCATAATATCAATCTTCATAAATCAGAAATCATTGGGATAAATGTGGGGCATGATACCATCCAGGATCTTGCTAAAAAATTATGGCTGCAAAATAGGAACTTGGCCCAACTCTTATTTAGGGCTCCCCTTAAATGGGTTTCCCAGGACCTTATCTTTTTGGAATCCTATTATTGA

Coding sequence (CDS)

ATGTTATCCAAAGCTGAAATGGAAGGTGAAATAAAGGGCTTTCATGTGGGTGGTGGTGACATTTGTATTAATCACATTCAGTTTGCAGATGACACTATCTTTTTTTTTTTTTTTTTTTTTTCTGATTTTGAAGATGAATCATCCCTTCAGTGTTTGCTATCAGTGATAGGCGCCTTTGAAAATATGTCGGGTCATAATATCAATCTTCATAAATCAGAAATCATTGGGATAAATGTGGGGCATGATACCATCCAGGATCTTGCTAAAAAATTATGGCTGCAAAATAGGAACTTGGCCCAACTCTTATTTAGGGCTCCCCTTAAATGGGTTTCCCAGGACCTTATCTTTTTGGAATCCTATTATTGA

Protein sequence

MLSKAEMEGEIKGFHVGGGDICINHIQFADDTIFFFFFFFSDFEDESSLQCLLSVIGAFENMSGHNINLHKSEIIGINVGHDTIQDLAKKLWLQNRNLAQLLFRAPLKWVSQDLIFLESYY
Homology
[Close]
BLAST of Lag0010626 vs. NCBI nr
Match: RVW22719.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-08
Identity = 41/91 (45.05%), Postives = 54/91 (59.34%), Query Frame = 0 

Query: 1   MLSKAEMEGEIKGFHVGGGDICINHIQFADDTIFFFFFFFSDFEDESSLQCLLSVIGAFE 60
           ML +AE    ++GF VG     ++H+QFADDTIFFF         E  LQ L S++ AF 
Sbjct: 414 MLVRAEERNMLEGFRVGRNRTRVSHLQFADDTIFFF------NTREEDLQTLKSLLLAFG 473

Query: 61  NMSGHNINLHKSEIIGINVGHDTIQDLAKKL 92
           ++SG  +NL KS I GIN+ H  I  LA+ L
Sbjct: 474 HISGLKVNLDKSNIYGINLDHAHISRLAETL 498

[Close]
BLAST of Lag0010626 vs. NCBI nr
Match: RVX04736.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 69.7 bits (169), Expect = 2.0e-08
Identity = 41/91 (45.05%), Postives = 52/91 (57.14%), Query Frame = 0 

Query: 1    MLSKAEMEGEIKGFHVGGGDICINHIQFADDTIFFFFFFFSDFEDESSLQCLLSVIGAFE 60
            ML +AE     +GF VG     ++H+QFADDTIFFF         E  L  L SV+  F 
Sbjct: 923  MLLRAEERNVFEGFRVGRNRTRVSHLQFADDTIFFF------STREEDLLTLKSVLVVFG 982

Query: 61   NMSGHNINLHKSEIIGINVGHDTIQDLAKKL 92
            ++SG  +NL KS I GIN+G D +  LAK L
Sbjct: 983  HISGLKVNLDKSNIYGINLGQDHLHRLAKLL 1007

[Close]
BLAST of Lag0010626 vs. NCBI nr
Match: RVW39059.1 (Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera])

HSP 1 Score: 68.6 bits (166), Expect = 4.3e-08
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 0 

Query: 1   MLSKAEMEGEIKGFHVGGGDICINHIQFADDTIFFFFFFFSDFEDESSLQCLLSVIGAFE 60
           ML +AE    +KGF VG   I ++H+QFADDTIFF          E  L  L SV+  F 
Sbjct: 318 MLLRAEERNALKGFRVGRNRIRVSHLQFADDTIFF------SSTREEDLLTLKSVLLVFG 377

Query: 61  NMSGHNINLHKSEIIGINVGHDTIQDLAKKL 92
           ++SG  +NL KS I GIN+G + +  LA+ L
Sbjct: 378 HISGLKVNLDKSNIYGINLGQNHLHRLAELL 402

[Close]
BLAST of Lag0010626 vs. NCBI nr
Match: RVW75343.1 (LINE-1 reverse transcriptase-like [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 7.4e-08
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 0 

Query: 1   MLSKAEMEGEIKGFHVGGGDICINHIQFADDTIFFFFFFFSDFEDESSLQCLLSVIGAFE 60
           ML +AE    ++GF VG     ++H+QFADDTIFF          E  LQ L S++ AF 
Sbjct: 53  MLVRAEERNMLEGFRVGRNRTRVSHLQFADDTIFF------SNTREEDLQTLKSLLLAFG 112

Query: 61  NMSGHNINLHKSEIIGINVGHDTIQDLAKKL 92
           ++SG  +NL KS I GIN+ H  I  LA+ L
Sbjct: 113 HISGLKVNLDKSNIYGINLDHAHISRLAETL 137

[Close]
BLAST of Lag0010626 vs. NCBI nr
Match: RVW66531.1 (putative mitochondrial protein [Vitis vinifera])

HSP 1 Score: 67.8 bits (164), Expect = 7.4e-08
Identity = 40/91 (43.96%), Postives = 53/91 (58.24%), Query Frame = 0 

Query: 1   MLSKAEMEGEIKGFHVGGGDICINHIQFADDTIFFFFFFFSDFEDESSLQCLLSVIGAFE 60
           ML +AE    ++GF VG     ++H+QFADDTIFF          E  LQ L S++ AF 
Sbjct: 85  MLLRAEERNMLEGFRVGRNRTRVSHLQFADDTIFF------SNTREEDLQTLKSLLLAFG 144

Query: 61  NMSGHNINLHKSEIIGINVGHDTIQDLAKKL 92
           ++SG  +NL KS I GIN+ H  I  LA+ L
Sbjct: 145 HISGLKVNLDKSNIYGINLDHAHISRLAETL 169

The following BLAST results are available for this feature:
BLAST of Lag0010626 vs. NCBI nr
Match NameE-valueIdentityDescription
RVW22719.12.0e-0845.05Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVX04736.12.0e-0845.05Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW39059.14.3e-0843.96Transposon TX1 uncharacterized 149 kDa protein [Vitis vinifera][more]
RVW75343.17.4e-0843.96LINE-1 reverse transcriptase-like [Vitis vinifera][more]
RVW66531.17.4e-0843.96putative mitochondrial protein [Vitis vinifera][more]
BLAST of Lag0010626 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0010626.1Lag0010626.1mRNA