Lag0010590 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0010590
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionDNA-directed DNA polymerase
Locationchr1: 1862151 .. 1862965 (+)
RNA-Seq ExpressionLag0010590
SyntenyLag0010590
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTGCCACCATCTTCATAGTGCGACTGCTAGTGCATCTCATGTTTGCAGAAATTTTTTGGGATTCATTTTCACGTCCAGATTTGCTTCTCCTCTTCGTTCCTCTTCCTCTTCTTCTTCTTTGAGGATACAATCTCTTGTTCACCATTCTTTTCCGTCTTTCTCCGTTCTGCTATCCCCGAAGGTTAGTTTCTACTGGTTCGTACTTATTCTTAATTGATTCTAGCATTTTTACCAAGTAACTTAGTTGGAAGAAATTAGGAGGCTCATTAATGGTGGGGTGTTATAGTGCGGATGTGAAATGGGCGAAATATATTCTGCTTTGTGAGCAAAATGTGGAAGATGGCTATCGTTGCAATAATTTTTCTTGCCTTCTCAATACGAGAGGTGGATACTATTTTTGTTGCGAGGGTTTAAGTGAATAAGATTTTAATTGTGATCATAGCGTCTAATTTTAGTGTTTGGTTAAATTCGAAGCAATATACAATTATTGCCTCTGTTTTCTGCGTGCAGTTTTGTTAAAGAATTTTCTCTTCTCCTCAGGGATACTGTATTTCATCCGGAAGTATAAATGCTGCCAATACTGTAGATAGCAATTCAACTTATCATGGCAGTTCTGCATCTTCTAGAAGCCAGCAAATGCTGCAACTCCAAGATTCATTGTCAAATTCACTCACGTGCAAAGAAGAAACTGGAACTGACACTCCTTCAGATGCCAGAGTCATGCTAATTGATGGCACATCAATCATTTATAGAGCATATTACAAGCTTTTGGGTATGGTTAGACTTGTCAATCAGAACGTTATAATTTAA

mRNA sequence

ATGGCCTGCCACCATCTTCATAGTGCGACTGCTAGTGCATCTCATGTTTGCAGAAATTTTTTGGGATTCATTTTCACGTCCAGATTTGCTTCTCCTCTTCGTTCCTCTTCCTCTTCTTCTTCTTTGAGGATACAATCTCTTGTTCACCATTCTTTTCCGTCTTTCTCCGTTCTGCTATCCCCGAAGGGATACTGTATTTCATCCGGAAGTATAAATGCTGCCAATACTGTAGATAGCAATTCAACTTATCATGGCAGTTCTGCATCTTCTAGAAGCCAGCAAATGCTGCAACTCCAAGATTCATTGTCAAATTCACTCACGTGCAAAGAAGAAACTGGAACTGACACTCCTTCAGATGCCAGAGTCATGCTAATTGATGGCACATCAATCATTTATAGAGCATATTACAAGCTTTTGGGTATGGTTAGACTTGTCAATCAGAACGTTATAATTTAA

Coding sequence (CDS)

ATGGCCTGCCACCATCTTCATAGTGCGACTGCTAGTGCATCTCATGTTTGCAGAAATTTTTTGGGATTCATTTTCACGTCCAGATTTGCTTCTCCTCTTCGTTCCTCTTCCTCTTCTTCTTCTTTGAGGATACAATCTCTTGTTCACCATTCTTTTCCGTCTTTCTCCGTTCTGCTATCCCCGAAGGGATACTGTATTTCATCCGGAAGTATAAATGCTGCCAATACTGTAGATAGCAATTCAACTTATCATGGCAGTTCTGCATCTTCTAGAAGCCAGCAAATGCTGCAACTCCAAGATTCATTGTCAAATTCACTCACGTGCAAAGAAGAAACTGGAACTGACACTCCTTCAGATGCCAGAGTCATGCTAATTGATGGCACATCAATCATTTATAGAGCATATTACAAGCTTTTGGGTATGGTTAGACTTGTCAATCAGAACGTTATAATTTAA

Protein sequence

MACHHLHSATASASHVCRNFLGFIFTSRFASPLRSSSSSSSLRIQSLVHHSFPSFSVLLSPKGYCISSGSINAANTVDSNSTYHGSSASSRSQQMLQLQDSLSNSLTCKEETGTDTPSDARVMLIDGTSIIYRAYYKLLGMVRLVNQNVII
Homology
[Close]
BLAST of Lag0010590 vs. NCBI nr
Match: XP_038899892.1 (DNA polymerase I isoform X2 [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0 

Query: 1   MACHHLHSATASASHVCRNFLGFIFTSRFASPLRSSSSSSSLRIQSLVHHSFPSFSVLLS 60
           MACHHLH+ATASASH+CRNFLGFIFTS+F +P R SSSSSSLRIQSL HHS PSFSVLLS
Sbjct: 4   MACHHLHTATASASHICRNFLGFIFTSKFPNPFRFSSSSSSLRIQSLGHHSLPSFSVLLS 63

Query: 61  PKGYCISSGSINAANTVDSNSTYHGSSASSRSQQMLQLQDSLSNSLTCKEETGTDTPSDA 120
           PKGYC SSGSI+ ANTVDS +T+HGSSASSRSQQMLQ QDSLS+SLT KEETG + PSDA
Sbjct: 64  PKGYCSSSGSIDNANTVDSKATHHGSSASSRSQQMLQFQDSLSSSLTYKEETGIENPSDA 123

Query: 121 RVMLIDGTSIIYRAYYKLL 140
           RVMLIDGTS+IYRAYYKLL
Sbjct: 124 RVMLIDGTSVIYRAYYKLL 142

[Close]
BLAST of Lag0010590 vs. NCBI nr
Match: XP_038899895.1 (DNA polymerase I isoform X4 [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0 

Query: 1   MACHHLHSATASASHVCRNFLGFIFTSRFASPLRSSSSSSSLRIQSLVHHSFPSFSVLLS 60
           MACHHLH+ATASASH+CRNFLGFIFTS+F +P R SSSSSSLRIQSL HHS PSFSVLLS
Sbjct: 4   MACHHLHTATASASHICRNFLGFIFTSKFPNPFRFSSSSSSLRIQSLGHHSLPSFSVLLS 63

Query: 61  PKGYCISSGSINAANTVDSNSTYHGSSASSRSQQMLQLQDSLSNSLTCKEETGTDTPSDA 120
           PKGYC SSGSI+ ANTVDS +T+HGSSASSRSQQMLQ QDSLS+SLT KEETG + PSDA
Sbjct: 64  PKGYCSSSGSIDNANTVDSKATHHGSSASSRSQQMLQFQDSLSSSLTYKEETGIENPSDA 123

Query: 121 RVMLIDGTSIIYRAYYKLL 140
           RVMLIDGTS+IYRAYYKLL
Sbjct: 124 RVMLIDGTSVIYRAYYKLL 142

[Close]
BLAST of Lag0010590 vs. NCBI nr
Match: XP_038899896.1 (DNA polymerase I isoform X5 [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0 

Query: 1   MACHHLHSATASASHVCRNFLGFIFTSRFASPLRSSSSSSSLRIQSLVHHSFPSFSVLLS 60
           MACHHLH+ATASASH+CRNFLGFIFTS+F +P R SSSSSSLRIQSL HHS PSFSVLLS
Sbjct: 4   MACHHLHTATASASHICRNFLGFIFTSKFPNPFRFSSSSSSLRIQSLGHHSLPSFSVLLS 63

Query: 61  PKGYCISSGSINAANTVDSNSTYHGSSASSRSQQMLQLQDSLSNSLTCKEETGTDTPSDA 120
           PKGYC SSGSI+ ANTVDS +T+HGSSASSRSQQMLQ QDSLS+SLT KEETG + PSDA
Sbjct: 64  PKGYCSSSGSIDNANTVDSKATHHGSSASSRSQQMLQFQDSLSSSLTYKEETGIENPSDA 123

Query: 121 RVMLIDGTSIIYRAYYKLL 140
           RVMLIDGTS+IYRAYYKLL
Sbjct: 124 RVMLIDGTSVIYRAYYKLL 142

[Close]
BLAST of Lag0010590 vs. NCBI nr
Match: XP_038899891.1 (DNA polymerase I isoform X1 [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0 

Query: 1   MACHHLHSATASASHVCRNFLGFIFTSRFASPLRSSSSSSSLRIQSLVHHSFPSFSVLLS 60
           MACHHLH+ATASASH+CRNFLGFIFTS+F +P R SSSSSSLRIQSL HHS PSFSVLLS
Sbjct: 4   MACHHLHTATASASHICRNFLGFIFTSKFPNPFRFSSSSSSLRIQSLGHHSLPSFSVLLS 63

Query: 61  PKGYCISSGSINAANTVDSNSTYHGSSASSRSQQMLQLQDSLSNSLTCKEETGTDTPSDA 120
           PKGYC SSGSI+ ANTVDS +T+HGSSASSRSQQMLQ QDSLS+SLT KEETG + PSDA
Sbjct: 64  PKGYCSSSGSIDNANTVDSKATHHGSSASSRSQQMLQFQDSLSSSLTYKEETGIENPSDA 123

Query: 121 RVMLIDGTSIIYRAYYKLL 140
           RVMLIDGTS+IYRAYYKLL
Sbjct: 124 RVMLIDGTSVIYRAYYKLL 142

[Close]
BLAST of Lag0010590 vs. NCBI nr
Match: XP_038899897.1 (DNA polymerase I isoform X6 [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 2.2e-54
Identity = 117/139 (84.17%), Postives = 127/139 (91.37%), Query Frame = 0 

Query: 1   MACHHLHSATASASHVCRNFLGFIFTSRFASPLRSSSSSSSLRIQSLVHHSFPSFSVLLS 60
           MACHHLH+ATASASH+CRNFLGFIFTS+F +P R SSSSSSLRIQSL HHS PSFSVLLS
Sbjct: 4   MACHHLHTATASASHICRNFLGFIFTSKFPNPFRFSSSSSSLRIQSLGHHSLPSFSVLLS 63

Query: 61  PKGYCISSGSINAANTVDSNSTYHGSSASSRSQQMLQLQDSLSNSLTCKEETGTDTPSDA 120
           PKGYC SSGSI+ ANTVDS +T+HGSSASSRSQQMLQ QDSLS+SLT KEETG + PSDA
Sbjct: 64  PKGYCSSSGSIDNANTVDSKATHHGSSASSRSQQMLQFQDSLSSSLTYKEETGIENPSDA 123

Query: 121 RVMLIDGTSIIYRAYYKLL 140
           RVMLIDGTS+IYRAYYKLL
Sbjct: 124 RVMLIDGTSVIYRAYYKLL 142

The following BLAST results are available for this feature:
BLAST of Lag0010590 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038899892.12.2e-5484.17DNA polymerase I isoform X2 [Benincasa hispida][more]
XP_038899895.12.2e-5484.17DNA polymerase I isoform X4 [Benincasa hispida][more]
XP_038899896.12.2e-5484.17DNA polymerase I isoform X5 [Benincasa hispida][more]
XP_038899891.12.2e-5484.17DNA polymerase I isoform X1 [Benincasa hispida][more]
XP_038899897.12.2e-5484.17DNA polymerase I isoform X6 [Benincasa hispida][more]
BLAST of Lag0010590 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0010590.1Lag0010590.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0006261 DNA-dependent DNA replication
molecular_function GO:0003677 DNA binding
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0016787 hydrolase activity