Lag0010459 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0010459
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	transcription factor HHO6-like
Location	chr9: 47420566 .. 47421237 (-)
RNA-Seq Expression	Lag0010459
Synteny	Lag0010459

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCTTTCCCCCAAATTCACCTGGGATTTCCGTCCCAAATCCATCACTGATTTCCTCCGCCAGATTTCCAATGCCTCCACCCTCGATCATTTCCTCCAGAACTTGGAGGATGAGTTGAACAAGATCGATGCCTTCAAGCGGGAGCTCCCCTTCTGCATGCTTCTCTTGAACGATGGTCAGTTTTTCCACCTTCTTTTTCGATTCTGGGATATGGGTTTTTCCATTTCATTTGATTGGGTTCTGTTTTTGTTTCTGGGTGCTTCTGGATTTACCTCTTTTTTCTCCATGTGTTTCTGTTTTGTAGCCATTCTTGCTTTGAAGGACTCTTCACTGCAATGTGCCTCTTCTTCCTCTTCCCCCAAGCCCAAACCGGTTCTCGAGGAATTCATGTCTTTGAACAAAGACTCTTCTGATGAGAACGAGAAGGAACGGGATTGTAGAGATAAGAGGGAATGGATGAGCTCTGTGCAGCTATTGAAGACTGATGACTTTCAAAACCCCCAAATCAAAACCAAGGTAGGTAGCTGGATAGATAGAGTAATTGTGTGTGATCTTTGTTTGTTGCATTATTTGTCTGGAAACGAGAGGAGGGAGGCCCTCCCTCCTCCCGTCGCCGGTCCCGGAGAGGGAGGAGGGCTCCTCCTCCCTCTCCCTTTTTTTTATTAA

mRNA sequence

ATGGCTTCTCTTTCCCCCAAATTCACCTGGGATTTCCGTCCCAAATCCATCACTGATTTCCTCCGCCAGATTTCCAATGCCTCCACCCTCGATCATTTCCTCCAGAACTTGGAGGATGAGTTGAACAAGATCGATGCCTTCAAGCGGGAGCTCCCCTTCTGCATGCTTCTCTTGAACGATGCCATTCTTGCTTTGAAGGACTCTTCACTGCAATGTGCCTCTTCTTCCTCTTCCCCCAAGCCCAAACCGGTTCTCGAGGAATTCATGTCTTTGAACAAAGACTCTTCTGATGAGAACGAGAAGGAACGGGATTGTAGAGATAAGAGGGAATGGATGAGCTCTGTGCAGCTATTGAAGACTGATGACTTTCAAAACCCCCAAATCAAAACCAAGGTAGGTAGCTGGATAGATAGAGTAATTGTGTGTGATCTTTGTTTGTTGCATTATTTGTCTGGAAACGAGAGGAGGGAGGCCCTCCCTCCTCCCGTCGCCGGTCCCGGAGAGGGAGGAGGGCTCCTCCTCCCTCTCCCTTTTTTTTATTAA

Coding sequence (CDS)

ATGGCTTCTCTTTCCCCCAAATTCACCTGGGATTTCCGTCCCAAATCCATCACTGATTTCCTCCGCCAGATTTCCAATGCCTCCACCCTCGATCATTTCCTCCAGAACTTGGAGGATGAGTTGAACAAGATCGATGCCTTCAAGCGGGAGCTCCCCTTCTGCATGCTTCTCTTGAACGATGCCATTCTTGCTTTGAAGGACTCTTCACTGCAATGTGCCTCTTCTTCCTCTTCCCCCAAGCCCAAACCGGTTCTCGAGGAATTCATGTCTTTGAACAAAGACTCTTCTGATGAGAACGAGAAGGAACGGGATTGTAGAGATAAGAGGGAATGGATGAGCTCTGTGCAGCTATTGAAGACTGATGACTTTCAAAACCCCCAAATCAAAACCAAGGTAGGTAGCTGGATAGATAGAGTAATTGTGTGTGATCTTTGTTTGTTGCATTATTTGTCTGGAAACGAGAGGAGGGAGGCCCTCCCTCCTCCCGTCGCCGGTCCCGGAGAGGGAGGAGGGCTCCTCCTCCCTCTCCCTTTTTTTTATTAA

Protein sequence

MASLSPKFTWDFRPKSITDFLRQISNASTLDHFLQNLEDELNKIDAFKRELPFCMLLLNDAILALKDSSLQCASSSSSPKPKPVLEEFMSLNKDSSDENEKERDCRDKREWMSSVQLLKTDDFQNPQIKTKVGSWIDRVIVCDLCLLHYLSGNERREALPPPVAGPGEGGGLLLPLPFFY

Homology

[Close]

BLAST of Lag0010459 vs. NCBI nr
Match: XP_022988809.1 (transcription factor HHO6-like [Cucurbita maxima])

HSP 1 Score: 192.6 bits (488), Expect = 3.0e-45
Identity = 100/139 (71.94%), Postives = 115/139 (82.73%), Query Frame = 0


Query: 1   MASLSPKFTWDFRPKSITDFLRQIS-------NASTLDHFLQNLEDELNKIDAFKRELPF 60
           M S+SPKFTWDFRP++++DFL QIS         S L  F+ +LE+E+ KIDAFKRELPF
Sbjct: 1   MPSVSPKFTWDFRPQTVSDFLHQISLLANASDRVSRLGDFINSLEEEMKKIDAFKRELPF 60

Query: 61  CMLLLNDAILALKDSSLQCASSS-SSPKPKPVLEEFMSLNKDSSDENEKERDCRDKREWM 120
           CMLLLNDAILALK SSLQC SSS SSPK KPVLEEF+SLNKDSS++NEK++DCRDK+EWM
Sbjct: 61  CMLLLNDAILALKGSSLQCVSSSCSSPKTKPVLEEFISLNKDSSNDNEKKQDCRDKKEWM 120

Query: 121 SSVQLLKTDDFQNPQIKTK 132
           SSVQL  TDDFQN Q KTK
Sbjct: 121 SSVQLWNTDDFQNTQTKTK 139

[Close]

BLAST of Lag0010459 vs. NCBI nr
Match: XP_022135634.1 (transcription factor HHO6 [Momordica charantia])

HSP 1 Score: 188.7 bits (478), Expect = 4.3e-44
Identity = 104/141 (73.76%), Postives = 115/141 (81.56%), Query Frame = 0


Query: 1   MASLSPKFTWD--FRPKSITDFLRQIS-------NASTLDHFLQNLEDELNKIDAFKREL 60
           M SLSP  +WD  F PK+I DFLR+IS         S LD F++NLE+E+ KIDAFKREL
Sbjct: 1   MGSLSPNISWDYPFTPKTIADFLRRISTMTNASERLSRLDDFVKNLEEEMKKIDAFKREL 60

Query: 61  PFCMLLLNDAILALKDSSLQCASSSSSPKPKPVLEEFMSLNKDSSDENEKERDCRDKREW 120
           PFCMLLLNDAILALKDSSLQC SS SSPKPKPVLEEF+SL KD SDENE+E+D RDK+EW
Sbjct: 61  PFCMLLLNDAILALKDSSLQCGSSCSSPKPKPVLEEFISLKKD-SDENEEEQDSRDKKEW 120

Query: 121 MSSVQLLKTDDFQN-PQIKTK 132
           MSSVQL KTDDFQN PQIKTK
Sbjct: 121 MSSVQLWKTDDFQNTPQIKTK 140

[Close]

BLAST of Lag0010459 vs. NCBI nr
Match: XP_023530102.1 (transcription factor HHO6-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 188.7 bits (478), Expect = 4.3e-44
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 1   MASLSPKFTWDFRPKSITDFLRQIS-------NASTLDHFLQNLEDELNKIDAFKRELPF 60
           M S+SPKFTWDFRPK+++DFL QIS         S L  F+ +LE+E+ KIDAFKRELPF
Sbjct: 1   MPSVSPKFTWDFRPKTVSDFLHQISLIANASDRVSRLGDFINSLEEEMKKIDAFKRELPF 60

Query: 61  CMLLLNDAILALKDSSLQCASSS-SSPKPKPVLEEFMSLNKDSSDENEKERDCRDKREWM 120
           CMLLLNDAILALK SSLQC SSS SSPK KPVLEEF+SLNKDS ++NEK++DCRDK+EWM
Sbjct: 61  CMLLLNDAILALKGSSLQCVSSSCSSPKTKPVLEEFISLNKDSPNDNEKKQDCRDKKEWM 120

Query: 121 SSVQLLKTDDFQNPQIKTK 132
           SSVQL  +DDFQN Q K K
Sbjct: 121 SSVQLWNSDDFQNTQTKAK 139

[Close]

BLAST of Lag0010459 vs. NCBI nr
Match: KAG7022439.1 (Transcription factor HHO6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 188.3 bits (477), Expect = 5.6e-44
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 1   MASLSPKFTWDFRPKSITDFLRQIS-------NASTLDHFLQNLEDELNKIDAFKRELPF 60
           M S+SPKFTWDFRPK+++DFL QIS         S L  F+ +LE+E+ KIDAFKRELPF
Sbjct: 1   MPSVSPKFTWDFRPKTVSDFLHQISLLANASDRVSRLGDFINSLEEEMKKIDAFKRELPF 60

Query: 61  CMLLLNDAILALKDSSLQCASSS-SSPKPKPVLEEFMSLNKDSSDENEKERDCRDKREWM 120
           CMLLLNDAILALK SSLQC SSS SSPK KPVLEEF+SLNKDS ++NEK++DCRDK+EWM
Sbjct: 61  CMLLLNDAILALKGSSLQCVSSSCSSPKAKPVLEEFISLNKDSPNDNEKKQDCRDKKEWM 120

Query: 121 SSVQLLKTDDFQNPQIKTK 132
           SSVQL  +DD QN Q KTK
Sbjct: 121 SSVQLWNSDDLQNTQTKTK 139

[Close]

BLAST of Lag0010459 vs. NCBI nr
Match: XP_022927686.1 (transcription factor HHO6-like [Cucurbita moschata])

HSP 1 Score: 188.3 bits (477), Expect = 5.6e-44
Identity = 98/139 (70.50%), Postives = 113/139 (81.29%), Query Frame = 0


Query: 1   MASLSPKFTWDFRPKSITDFLRQIS-------NASTLDHFLQNLEDELNKIDAFKRELPF 60
           M S+SPKFTWDFRPK+++DFL QIS         S L  F+ +LE+E+ KIDAFKRELPF
Sbjct: 1   MPSVSPKFTWDFRPKTVSDFLHQISLLANASDRVSRLGDFINSLEEEMKKIDAFKRELPF 60

Query: 61  CMLLLNDAILALKDSSLQCASSS-SSPKPKPVLEEFMSLNKDSSDENEKERDCRDKREWM 120
           CMLLLNDAILALK SSLQC SSS SSPK KPVLEEF+SLNKDS ++NEK++DCRDK+EWM
Sbjct: 61  CMLLLNDAILALKGSSLQCVSSSCSSPKAKPVLEEFISLNKDSPNDNEKKQDCRDKKEWM 120

Query: 121 SSVQLLKTDDFQNPQIKTK 132
           SSVQL  +DD QN Q KTK
Sbjct: 121 SSVQLWNSDDLQNTQTKTK 139

[Close]

BLAST of Lag0010459 vs. ExPASy Swiss-Prot
Match: F4JRB0 (Transcription factor HHO5 OS=Arabidopsis thaliana OX=3702 GN=HHO5 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.1e-08
Identity = 44/118 (37.29%), Postives = 60/118 (50.85%), Query Frame = 0


Query: 14  PKSITDFLRQI-------SNASTLDHFLQNLEDELNKIDAFKRELPFCMLLLND------ 73
           PK ++ FL ++       S  S +D ++  LE+E NKID FKRELP CMLLLN+      
Sbjct: 22  PKPLSQFLDEVSRIKDNHSKLSEIDGYVGKLEEERNKIDVFKRELPLCMLLLNEEIVFLC 81

Query: 74  -AILALKDSSLQCASSSSSPKPKPVLEEFMSLNKDSSDENEKERDCRDKREWMSSVQL 118
            AI ALKD + +  S  +S                  D+ E+ +   DK+ WMSS QL
Sbjct: 82  VAIGALKDEARKGLSLMAS--------------NGKFDDVERAKPETDKKSWMSSAQL 125

[Close]

BLAST of Lag0010459 vs. ExPASy Swiss-Prot
Match: Q9ZQ85 (Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 SV=2)

HSP 1 Score: 56.6 bits (135), Expect = 3.3e-07
Identity = 44/128 (34.38%), Postives = 63/128 (49.22%), Query Frame = 0


Query: 1   MASLSPKFTWDFRPKSITDFLRQISN-------ASTLDHFLQNLEDELNKIDAFKRELPF 60
           MAS S + + D +P+S +  L+   +          L+  L  LE E  KIDAFKRELP 
Sbjct: 1   MAS-SSELSLDCKPQSYSMLLKSFGDNFQSDPTTHKLEDLLSRLEQERLKIDAFKRELPL 60

Query: 61  CMLLLNDAILALKDS----SLQCASSSSSPKPKPVLEEFMSLNKDSSDENEKERDCRDKR 118
           CM LLN+A+   K           +++ S   +PVLEEF+ L       N+ E+      
Sbjct: 61  CMQLLNNAVEVYKQQLEAYRANSNNNNQSVGTRPVLEEFIPL------RNQPEKTNNKGS 120

[Close]

BLAST of Lag0010459 vs. ExPASy Swiss-Prot
Match: Q9FX84 (Transcription factor HHO6 OS=Arabidopsis thaliana OX=3702 GN=HHO6 PE=2 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 9.1e-05
Identity = 34/103 (33.01%), Postives = 58/103 (56.31%), Query Frame = 0


Query: 30  LDHFLQNLEDELNKIDAFKRELPFCMLLLNDAILALKDSSLQCASSSSSPKPKPVLEEFM 89
           +D  ++ LE+E  K+++ + ELP  + +LNDAIL LKD   +C    S  + +P+L++F+
Sbjct: 28  VDEHVKKLEEEKRKLESCQLELPLSLQILNDAILYLKDK--RC----SEMETQPLLKDFI 87

Query: 90  SLNKDSSDENEKERDCRDKREWMSSVQLLKTDDFQNPQIKTKV 133
           S+NK    E   E   R++       Q  K +D    +IK+K+
Sbjct: 88  SVNKPIQGERGIELLKREELMREKKFQQWKANDDHTSKIKSKL 124

[Close]

BLAST of Lag0010459 vs. ExPASy Swiss-Prot
Match: Q5VRW2 (Transcription factor NIGTH1 OS=Oryza sativa subsp. japonica OX=39947 GN=NHO1 PE=1 SV=2)

HSP 1 Score: 48.5 bits (114), Expect = 9.1e-05
Identity = 37/103 (35.92%), Postives = 51/103 (49.51%), Query Frame = 0


Query: 30  LDHFLQNLEDELNKIDAFKRELPFCMLLLNDAILALKD-------SSLQCASSSSSPKPK 89
           L  FL  LE+E  KIDAFKRELP CM LLN A+ A +         S   A+++++ +  
Sbjct: 30  LQEFLSRLEEERLKIDAFKRELPLCMQLLNHAMEAYRQQLEAYQMGSQHSAAAAAAARAP 89

Query: 90  PVLEEFMSLNKDSSDENEKERDC--------RDKREWMSSVQL 118
            VLEEF+ +     D    ++           +K  WM S QL
Sbjct: 90  LVLEEFIPVKNIGIDVVAADKAAAAGGNSVSSEKASWMVSAQL 132

[Close]

BLAST of Lag0010459 vs. ExPASy Swiss-Prot
Match: Q8VZS3 (Transcription factor HHO2 OS=Arabidopsis thaliana OX=3702 GN=HHO2 PE=1 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.0e-04
Identity = 36/117 (30.77%), Postives = 54/117 (46.15%), Query Frame = 0


Query: 33  FLQNLEDELNKIDAFKRELPFCMLLLNDAILALK--------DSSLQCASSSSSPKPKPV 92
           +++ LE+E  KI  F+RELP C+ L+  AI A +         +S QC+  ++S    PV
Sbjct: 17  YVEALEEEQKKIQVFQRELPLCLELVTQAIEACRKELSGTTTTTSEQCSEQTTSVCGGPV 76

Query: 93  LEEFMSLNK--------------DSSDENEKERDCRDKREWMSSVQLLKTDDFQNPQ 128
            EEF+ + K              D   E+  E     K +W+ SVQL       NP+
Sbjct: 77  FEEFIPIKKISSLCEEVQEEEEEDGEHESSPELVNNKKSDWLRSVQLWNHSPDLNPK 133

The following BLAST results are available for this feature:

BLAST of Lag0010459 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022988809.1	3.0e-45	71.94	transcription factor HHO6-like [Cucurbita maxima]	[more]
XP_022135634.1	4.3e-44	73.76	transcription factor HHO6 [Momordica charantia]	[more]
XP_023530102.1	4.3e-44	70.50	transcription factor HHO6-like [Cucurbita pepo subsp. pepo]	[more]
KAG7022439.1	5.6e-44	70.50	Transcription factor HHO6 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022927686.1	5.6e-44	70.50	transcription factor HHO6-like [Cucurbita moschata]	[more]

BLAST of Lag0010459 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4JRB0	5.1e-08	37.29	Transcription factor HHO5 OS=Arabidopsis thaliana OX=3702 GN=HHO5 PE=1 SV=1	[more]
Q9ZQ85	3.3e-07	34.38	Myb family transcription factor EFM OS=Arabidopsis thaliana OX=3702 GN=EFM PE=1 ...	[more]
Q9FX84	9.1e-05	33.01	Transcription factor HHO6 OS=Arabidopsis thaliana OX=3702 GN=HHO6 PE=2 SV=1	[more]
Q5VRW2	9.1e-05	35.92	Transcription factor NIGTH1 OS=Oryza sativa subsp. japonica OX=39947 GN=NHO1 PE=...	[more]
Q8VZS3	2.0e-04	30.77	Transcription factor HHO2 OS=Arabidopsis thaliana OX=3702 GN=HHO2 PE=1 SV=1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 30..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 74..106
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..106
None	No IPR available	PANTHER	PTHR31003:SF3	TRANSCRIPTION FACTOR HHO6	coord: 4..127
IPR044787	Myb family transcription factor HRS1-like	PANTHER	PTHR31003	MYB FAMILY TRANSCRIPTION FACTOR	coord: 4..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0010459.1	Lag0010459.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity