Lag0010413 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0010413
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Unknown protein
Location	chr9: 47068427 .. 47068876 (+)
RNA-Seq Expression	Lag0010413
Synteny	Lag0010413

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCAGAGCGTCCTCCTCCGATCACCGCCGGGGACTCGCCAGCAACCGCTTCTGAAAGACCAGTCGGCCAATAGAGTTAAGGAGAAGCGGCGATTTGCGGAGGTGGCCGGCGGAACGGCGGCGGAGTGCGCGGCAATATGTTGTTGCTTTCCATGCAGCATGATGAACCTTCTGATATTGACGGTCTATAAAGTTCCAGTGGGGCTCTGCAAAAAGGTGTGGAGAAAGAGAGGAAAACAACGCCACATCGCGAAGAAAAACAAGGCGGCGACGGCGGCCGGTGCAGGCATCGAGTGGCCGAATCGTGATGGTGAAAAGGAGGATCATCGGGGAGAATCGCTTCCGTCGTCGTATTTGTCATCGGAGGATATGGAATTGGAGAAGGAGATGTGGGAAGGATTTTACGGGACAGGATTCTGGCGGACGGCGTCTCAGAGAGAAACCTAA

mRNA sequence

ATGAATCAGAGCGTCCTCCTCCGATCACCGCCGGGGACTCGCCAGCAACCGCTTCTGAAAGACCAGTCGGCCAATAGAGTTAAGGAGAAGCGGCGATTTGCGGAGGTGGCCGGCGGAACGGCGGCGGAGTGCGCGGCAATATGTTGTTGCTTTCCATGCAGCATGATGAACCTTCTGATATTGACGGTCTATAAAGTTCCAGTGGGGCTCTGCAAAAAGGTGTGGAGAAAGAGAGGAAAACAACGCCACATCGCGAAGAAAAACAAGGCGGCGACGGCGGCCGGTGCAGGCATCGAGTGGCCGAATCGTGATGGTGAAAAGGAGGATCATCGGGGAGAATCGCTTCCGTCGTCGTATTTGTCATCGGAGGATATGGAATTGGAGAAGGAGATGTGGGAAGGATTTTACGGGACAGGATTCTGGCGGACGGCGTCTCAGAGAGAAACCTAA

Coding sequence (CDS)

ATGAATCAGAGCGTCCTCCTCCGATCACCGCCGGGGACTCGCCAGCAACCGCTTCTGAAAGACCAGTCGGCCAATAGAGTTAAGGAGAAGCGGCGATTTGCGGAGGTGGCCGGCGGAACGGCGGCGGAGTGCGCGGCAATATGTTGTTGCTTTCCATGCAGCATGATGAACCTTCTGATATTGACGGTCTATAAAGTTCCAGTGGGGCTCTGCAAAAAGGTGTGGAGAAAGAGAGGAAAACAACGCCACATCGCGAAGAAAAACAAGGCGGCGACGGCGGCCGGTGCAGGCATCGAGTGGCCGAATCGTGATGGTGAAAAGGAGGATCATCGGGGAGAATCGCTTCCGTCGTCGTATTTGTCATCGGAGGATATGGAATTGGAGAAGGAGATGTGGGAAGGATTTTACGGGACAGGATTCTGGCGGACGGCGTCTCAGAGAGAAACCTAA

Protein sequence

MNQSVLLRSPPGTRQQPLLKDQSANRVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLILTVYKVPVGLCKKVWRKRGKQRHIAKKNKAATAAGAGIEWPNRDGEKEDHRGESLPSSYLSSEDMELEKEMWEGFYGTGFWRTASQRET

Homology

[Close]

BLAST of Lag0010413 vs. NCBI nr
Match: XP_023512462.1 (uncharacterized protein LOC111777213 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 244.2 bits (622), Expect = 7.1e-61
Identity = 125/151 (82.78%), Postives = 132/151 (87.42%), Query Frame = 0


Query: 1   MNQSVLLRSPPGTRQQPLLKDQSANRVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQ+VLLRSPP TRQQPLL D+S NR+KEK RFAEVAGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKVWRKRGKQRHIAKKNKAATAAGA--GIEWPNRDGEKEDHRGESLPSS 120
           LTVYKVPVGLCKK W KRGK+RHI K+NKAA A GA  G E P  DGEKED  GESLPSS
Sbjct: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAGGATVGKEGPKHDGEKEDW-GESLPSS 120

Query: 121 YLSSEDMELEKEMWEGFYGTGFWRTASQRET 150
           YLSSED+ELEKEMW+ FYGTGFWRT SQRET
Sbjct: 121 YLSSEDVELEKEMWDQFYGTGFWRTPSQRET 150

[Close]

BLAST of Lag0010413 vs. NCBI nr
Match: KAG6570325.1 (hypothetical protein SDJN03_29240, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010219.1 hypothetical protein SDJN02_27011, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 243.8 bits (621), Expect = 9.3e-61
Identity = 125/152 (82.24%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MNQSVLLRSPPGTRQQPLLKDQSANRVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQ+VLLRSPP TRQQPLL D+S NR+KEK RFAEVAGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAEVAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKVWRKRGKQRHIAKKNKAATAAG---AGIEWPNRDGEKEDHRGESLPS 120
           LTVYKVPVGLCKK W KRGK+RHI K+NKAA AAG    G E P  DGEKED  GESLPS
Sbjct: 61  LTVYKVPVGLCKKAWNKRGKRRHITKRNKAAAAAGGATVGKEGPKHDGEKEDW-GESLPS 120

Query: 121 SYLSSEDMELEKEMWEGFYGTGFWRTASQRET 150
           SYLSSED+ELEKEMW+ FYGTGFWRT SQRET
Sbjct: 121 SYLSSEDVELEKEMWDQFYGTGFWRTPSQRET 151

[Close]

BLAST of Lag0010413 vs. NCBI nr
Match: XP_038901895.1 (uncharacterized protein LOC120088573 [Benincasa hispida])

HSP 1 Score: 243.0 bits (619), Expect = 1.6e-60
Identity = 124/149 (83.22%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MNQSVLLRSPPGTRQQPLLKDQSANRVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQSVLL+SPPGTRQQPLL+D+S NRVKEKRRFAEVAGGTAA CAAICCCFPCSMMNLLI
Sbjct: 1   MNQSVLLQSPPGTRQQPLLRDKSGNRVKEKRRFAEVAGGTAAGCAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKVWRKRGKQRHIAKKNKAATAAGAGIEWPNRDGEKEDHRGESLPSSYL 120
           LTVYKVPVGLCKKVW KRGK+R IAKKN     A AG EW N D EKED    SLPSSY 
Sbjct: 61  LTVYKVPVGLCKKVWNKRGKRRQIAKKN-----AAAGKEWRNDDREKEDRGESSLPSSYF 120

Query: 121 SSEDMELEKEMWEGFYGTGFWRTASQRET 150
           SSEDMELEKEMWE FYGTGFWRT SQRET
Sbjct: 121 SSEDMELEKEMWERFYGTGFWRTPSQRET 144

[Close]

BLAST of Lag0010413 vs. NCBI nr
Match: KAA0040078.1 (uncharacterized protein E6C27_scaffold366G00480 [Cucumis melo var. makuwa] >TYK21702.1 uncharacterized protein E5676_scaffold859G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 7.9e-60
Identity = 125/149 (83.89%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MNQSVLLRSPPGTRQQPLLKDQSANRVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQ VLLRSPPGTRQQPLL+D+S NRVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQGVLLRSPPGTRQQPLLRDKSGNRVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKVWRKRGKQRHIAKKNKAATAAGAGIEWPNRDGEKEDHRGESLPSSYL 120
           LTVYKVPVGLCKKVW KRGK+R IAKKN  A   G   EW N D EKED  GESLPSSYL
Sbjct: 61  LTVYKVPVGLCKKVWNKRGKRREIAKKNAGAVVGGK--EWGNDDREKEDW-GESLPSSYL 120

Query: 121 SSEDMELEKEMWEGFYGTGFWRTASQRET 150
           SSEDMELEKEMWE FYG GF RT SQRET
Sbjct: 121 SSEDMELEKEMWERFYGNGFLRTPSQRET 146

[Close]

BLAST of Lag0010413 vs. NCBI nr
Match: XP_022986081.1 (uncharacterized protein LOC111483938 [Cucurbita maxima])

HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59
Identity = 124/154 (80.52%), Postives = 132/154 (85.71%), Query Frame = 0


Query: 1   MNQSVLLRSPPGTRQQPLLKDQSANRVKEKRRFAEVAGGTAAECAAICCCFPCSMMNLLI 60
           MNQ+VLLRSPP TRQQPLL D+S NR+KEK RFAE+AGGTAAECAAICCCFPCSMMNLLI
Sbjct: 1   MNQNVLLRSPPETRQQPLLTDKSPNRLKEKPRFAELAGGTAAECAAICCCFPCSMMNLLI 60

Query: 61  LTVYKVPVGLCKKVWRKRGKQRHIAKKNKAATAAGA-----GIEWPNRDGEKEDHRGESL 120
           LTVYKVPVGLCKK W +RGK+RHI KKNKAA AA A     G E P  DGEKED  GESL
Sbjct: 61  LTVYKVPVGLCKKAWNRRGKRRHITKKNKAAAAATAGGATVGKEGPKHDGEKEDW-GESL 120

Query: 121 PSSYLSSEDMELEKEMWEGFYGTGFWRTASQRET 150
           PSSYLSSED+ELEKEMW+ FYGTGFWRT SQRET
Sbjct: 121 PSSYLSSEDVELEKEMWDQFYGTGFWRTPSQRET 153

The following BLAST results are available for this feature:

BLAST of Lag0010413 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023512462.1	7.1e-61	82.78	uncharacterized protein LOC111777213 [Cucurbita pepo subsp. pepo]	[more]
KAG6570325.1	9.3e-61	82.24	hypothetical protein SDJN03_29240, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_038901895.1	1.6e-60	83.22	uncharacterized protein LOC120088573 [Benincasa hispida]	[more]
KAA0040078.1	7.9e-60	83.89	uncharacterized protein E6C27_scaffold366G00480 [Cucumis melo var. makuwa] >TYK2...	[more]
XP_022986081.1	1.0e-59	80.52	uncharacterized protein LOC111483938 [Cucurbita maxima]	[more]

BLAST of Lag0010413 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 82..123
None	No IPR available	PANTHER	PTHR33264:SF33	SUBFAMILY NOT NAMED	coord: 1..149
None	No IPR available	PANTHER	PTHR33264	EXPRESSED PROTEIN	coord: 1..149

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0010413.1	Lag0010413.1	mRNA