Lag0010394 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0010394
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCalpain-type cysteine protease DEK1
Locationchr9: 46912143 .. 46915145 (-)
RNA-Seq ExpressionLag0010394
SyntenyLag0010394
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGTAACTTCCTAGGAAACTTGCCTAACTTTACTTTCCATTTTCTTTTTAAGAATATTATTTCCATTCAACTCTTGACTTTTTTTTCTTTCTTTTTGGAATAAAATCTTGCAACTAATTTTTGTAGATTTTGTGATTAGTCCATAATCAGTCGCATTCAGTGTAGGCAAAAGATTAGGTCAGCTTCTTTTCAAACCCAAAAAATTACATATATAGTACTATTTATTGTACTGTATATTTGACTAAAAAAATTAGAATCTTAAGTGGATGAAATTAAAAGTTTAGGATAAAAATTAACATACTTGATCAAATTCATTGAAAAAATATATATTTTTTTGGGACAGTTGCATAGATGGTAAATTGGACCAAATTAATAGCAAATAGAGTACCGTTGCAAATTAATTGCATACATAGCAAAATTAATTGTACAAGACCAAAAAATTGTCGTCAGATTCTATCCGTGTCTATCACTGATAGACTTCGAATATTTAGAGTCTATCAATGTCTATCGGTGATAGACTCCGATTAATCAAAATTTATCAGTGTATCATTGATAGACTTATCAGCTTCGATTAATCGAAATCTATCAACGACTATCACTGATAGACTTTAAAATCGATTAATTAGAGTCTATCAGTAGACTGATAAATTTTGATTAATCAGAGTTTATTGCTGATAAACTTTGATAATTGAAGTCTATGAAATAGATTATAATTCACCAGAGTTGTTAATATATTTCGATGGATTTTGCTATATTTGCAATTTTTTTTACATTTGTGCTATATTTGCAATTATATAATTCTTATTTGCCACTCACCGCAAGTTCTCTATTATTATTATTATTATTATTTTTTGTCTCAAAGAGATATATAACTAAATAAACTTTGGGCTTAATATAATTGGGCCAAGAACTCTAGGCCTGTTTAGTTGTAACAAGTTCAGGCCCATTCACGCGGGTCGGCCCAATGAACTGAGAAGAAAGGCGCCAGACGGGAGAGACCTTGTTCTGTCGGAGGCCATTTCCCGGAACTCTTGTTCATGTGCTATCTCGTATGTGCAGAAATTCTTCACCGTGGGTTCAAGTCTGAAGAACATAGCGCTTCAGGTACTTTCATTTCTCTACCGCCTGGTTTATTGGTTGTTGAGATGGTTGAGGTGGTTGAGGTTTGGAAAAGAAAATGACCTTCAATCATCAAATAAGCGACAAAGTTGTATTTTGCACGATCACTTTTTATTAAGCTTTGTAATTCCAATGAGAGCAAGAAAAATTGAAGCAATTTCAGTTTCCTAATTTCGTTGTCTTTGAGACCAGTAGCTAAGACTTGCAATCACCATCAACTTTTTTTCTTTGTGCAATCATCGCGTTCTAGAGAATGCATCAATGCGATTATAATATTATGTGTGCTATGTGGACAAAAACAGTTGTTCGTTGTTTCAAAGTGAAATTCAGTTTTCTTGCAGTGGCAATGTATGTTTCGATTTGTAAATAGGCACTTGCTGCAGTCTTGTTATTTAAGTTGCGGTTTATGCTGGAAAAGACTTCATTGAGACGAATGATAGTACAAGATGGCTGGGCTGAAGTTAAAACGAAGGCCAAGAAGAACAAAAGGAGTCTCACGAGCAAAAATTACAGAAAATTGTTATTCTAAAGAATCAAGAATAAAAGCAAATTAAAAGAAAAGAAAAAAAAAAAGAAGCAAACGAATTAAAGTGGATATATAGAAATGAACCAAGCTCCAAATCTTTTTTCCGTGATCTCTTTACACCCAAGAAAATCCTTCCTATTTCTGTCAAACCAAAGAGTAGGAAATAATTGTTGTAAAAATATTTCTTTTGAGCTCAATGCCAAAGGAGTTCCGTCCATACAAAATTGGATGCCTTCCCTGGTTGGTCCGTTTTGTTGCATACTTTGTCAGAAAGCAGAGGAAGATTCGGATCACATTCTTTGGAACTGTGAATTCGTTCGTTCTGTTTGGAGTCGTTTCTTTGAGACATTTTGGTTGCAGGGGACGAGTTATTCGGAACATAGGGAAATGATCGAGGAGTTCCTCCTCCATCTGCCAAGGCACGAGAAGGAGAGACTTTTGTGGCAAGCAAGGATGTGTGCGTTGTTATGGAGTTTGTGGGGGGAAGAAACAATAAAGTGTTTAGGGAAAAATTATTAGGTGTTCCCGGTGCAATGAGACTCTCTCTTTAAAACCGTCGGATGTAAATCTTCAAATTTGTCTGTCCCTAATAACCGTTGGATACAAAATCAAGATACTTTTACAATTTCTCTCCCTTACATCCAATGGTGCAAAACTACCGGCCTCGTTGCACCCGAAACACCTAAAAATTTCTCTTGTTTAGGGGGTTGGATAAGACCCAGATGATGTTTGATCCCTTACTAGGTTCCATGATCTCTTTGGGCGTCTGTTTCGAAGCTTTTTTGTAATTACCCATTGGGTCTTATCTTGCTTGATTGAGGTCTTTTTCTTTAACGGGACTCCTTTTTGTGGGTTTGTTTTTTGTATGCGCTTGTATTCTTTCCTTCTTTCTCAATGAAAGTTGGATTTTTATAAAAAATAAAAAATAAAAAATATAGCACAACCATCTTGATTTAGCCCAATGCTTCCCTAAAAGTCTGGAAAAACCTCCCTCAAAGCTTCACTATGAAGAGGCATCTCCAAAAGATGTGATCAAAACCCTCTATTGAAATGTCTTCTTTCCTAAAAAAACATAATGGAAAAGCCTCTAATGCTTATAGGTCATTCCTTTAAGAGCCACACAGTGCAGGGGGTTGGAGAATGAGAGAAGAAAGTCATAAGGTGGGAGATGAAAATTTTACAAGAGAAAAGTGCTTGAGGATTCAAAACCTAAGATGCCTATCCATAGATCTGGGATCGAGATGAACTTTTTGGACAATGGAAAGGATAACTTATTGGCAGCCTCTGTATTGGATATTGATCTTCTGAAGTGGAAATCTTACATAAGGGACTCACTCAGCACAGAGGAATACTGA

mRNA sequence

ATGAGGCCCATTCACGCGGGTCGGCCCAATGAACTGAGAAGAAAGGCGCCAGACGGGAGAGACCTTGTTCTGTCGGAGGCCATTTCCCGGAACTCTTGTTCATGTGCTATCTCGTATGTGCAGAAATTCTTCACCGTGGGTTCAAGTCTGAAGAACATAGCGCTTCAGAAAGCAGAGGAAGATTCGGATCACATTCTTTGGAACTGTGAATTCGTTCGTTCTGTTTGGAGTCGTTTCTTTGAGACATTTTGGTTGCAGGGGACGAGTTATTCGGAACATAGGGAAATGATCGAGGAGTTCCTCCTCCATCTGCCAAGGCACGAGAAGGAGAGACTTTTGTGGCAAGCAAGGATATCTGGGATCGAGATGAACTTTTTGGACAATGGAAAGGATAACTTATTGGCAGCCTCTGTATTGGATATTGATCTTCTGAAGTGGAAATCTTACATAAGGGACTCACTCAGCACAGAGGAATACTGA

Coding sequence (CDS)

ATGAGGCCCATTCACGCGGGTCGGCCCAATGAACTGAGAAGAAAGGCGCCAGACGGGAGAGACCTTGTTCTGTCGGAGGCCATTTCCCGGAACTCTTGTTCATGTGCTATCTCGTATGTGCAGAAATTCTTCACCGTGGGTTCAAGTCTGAAGAACATAGCGCTTCAGAAAGCAGAGGAAGATTCGGATCACATTCTTTGGAACTGTGAATTCGTTCGTTCTGTTTGGAGTCGTTTCTTTGAGACATTTTGGTTGCAGGGGACGAGTTATTCGGAACATAGGGAAATGATCGAGGAGTTCCTCCTCCATCTGCCAAGGCACGAGAAGGAGAGACTTTTGTGGCAAGCAAGGATATCTGGGATCGAGATGAACTTTTTGGACAATGGAAAGGATAACTTATTGGCAGCCTCTGTATTGGATATTGATCTTCTGAAGTGGAAATCTTACATAAGGGACTCACTCAGCACAGAGGAATACTGA

Protein sequence

MRPIHAGRPNELRRKAPDGRDLVLSEAISRNSCSCAISYVQKFFTVGSSLKNIALQKAEEDSDHILWNCEFVRSVWSRFFETFWLQGTSYSEHREMIEEFLLHLPRHEKERLLWQARISGIEMNFLDNGKDNLLAASVLDIDLLKWKSYIRDSLSTEEY
Homology
[Close]
BLAST of Lag0010394 vs. NCBI nr
Match: TYK09969.1 (calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa])

HSP 1 Score: 62.8 bits (151), Expect = 3.1e-06
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = 0 

Query: 57  KAEEDSDHILWNCEFVRSVWSRFFETFWLQGTSYSEHREM---IEEFLLHLPRHEKERLL 116
           + EED DH+LW+CE V  VW  F +TF   G SY+ HR++   +EEFLL+ P  E+   L
Sbjct: 255 QVEEDLDHLLWHCELVSCVWDDFLQTF---GLSYARHRDVRGTVEEFLLNSPCGERGPFL 314

Query: 117 WQARISGIEMNFL 127
           W A +    + F+
Sbjct: 315 WHACVHAHLVGFV 324

[Close]
BLAST of Lag0010394 vs. NCBI nr
Match: TYK11201.1 (SIL1 [Cucumis melo var. makuwa])

HSP 1 Score: 56.6 bits (135), Expect = 2.2e-04
Identity = 27/66 (40.91%), Postives = 38/66 (57.58%), Query Frame = 0 

Query: 56  QKAEEDSDHILWNCEFVRSVWSRFFETFWLQGTSYSEHREMIEEFLLHLPRHEKERLLWQ 115
           QKA+ED D++ W+C+  R+VW+ F + F          R  IEEFLLH P  EK  +LW 
Sbjct: 163 QKAKEDLDNLFWDCQHERAVWNSFLQEFDSIFVGQRSVRVTIEEFLLHPPFREKWCILWL 222

Query: 116 ARISGI 122
           A +  +
Sbjct: 223 AGVCAV 228

[Close]
BLAST of Lag0010394 vs. NCBI nr
Match: XP_016900613.1 (PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo])

HSP 1 Score: 54.7 bits (130), Expect = 8.5e-04
Identity = 27/67 (40.30%), Postives = 37/67 (55.22%), Query Frame = 0 

Query: 55  LQKAEEDSDHILWNCEFVRSVWSRFFETFWLQGTSYSEHREMIEEFLLHLPRHEKERLLW 114
           L    ED DH+L +      +W  F +TF L    + + R MIEEFLL+LP  E+ R LW
Sbjct: 49  LHSVLEDLDHLLGHSALASGIWDAFLQTFGLLYARHRDVRGMIEEFLLNLPCGERGRFLW 108

Query: 115 QARISGI 122
           +A +  I
Sbjct: 109 RACVCAI 115

The following BLAST results are available for this feature:
BLAST of Lag0010394 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK09969.13.1e-0642.47calpain-type cysteine protease DEK1 [Cucumis melo var. makuwa][more]
TYK11201.12.2e-0440.91SIL1 [Cucumis melo var. makuwa][more]
XP_016900613.18.5e-0440.30PREDICTED: uncharacterized protein LOC107990976 [Cucumis melo][more]
BLAST of Lag0010394 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0010394.1Lag0010394.1mRNA