Lag0010377 (gene) Sponge gourd (AG‐4) v1

Overview
NameLag0010377
Typegene
OrganismLuffa acutangula (Sponge gourd (AG‐4) v1)
DescriptionCCHC-type domain-containing protein
Locationchr9: 46789490 .. 46790447 (-)
RNA-Seq ExpressionLag0010377
SyntenyLag0010377
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGACAGAGAAGCTGCTTGAGGGTTGGAAAAAGTTGTCGTTAACTGCTGAGGAGGAGGAGTTGGCGGTGGATATTGCTTCGGAGGCGGTGGCGGATTCTACTGCTAAAATGGATATCTGTCTGGTGGGTAAGCTTCTGGCGCCGCGTCCAATTGCCAGTGACGTCATTCGCCGGACGCTTTCAATTGCATGGCGTGTCGATTCCGGCCTGGCGGTGGATCGGTTGGGTAAGAATCTTTTTCTGTTTTCTTTTGACAAGGTTCATGATCGAAACAGGGTTCTTCGAACTGGTCCGTGGTTTTTTGACAAATTTTTGTTGGTGCTGGATGTGATGACGCTATGGCCAAACCATCGGAGATGCCGTTTAACAAAGTGGCTTTTTGGGTGCACTTCTTTGATCTCCCTATGGCTTGTATGAACCAAATTATGGCCCGCCGGTTAGGCAATGCAGTCGGTGAGTTTGAGAATGTGGATTGTAACTCAGAGGGGCTTTGTTGGGGTCTAGTCTACGGGTGCGCATTTTGATTGACATTACTAAACCACTTCGCCGTGGAATAAAGCTGAATGCCGAAGGGCCAATCGGCGGTTGTTGGATTCCTATGCAGTATGAGAAGTTGCCCCAGTACTGTGCTCATTGTGGAAAACTGGATCACGGTTCGAATGATTGTTCCTTGTTGACGGCTCCGATGAGTGATAAGGATAAGGTTGTGGAACGCTTCCAGTATGGACCGTGGCTTCGGTTTGAGGGGTCTGTGAAACAGTCCGGTCAGACGGAGGGGATGAAACAGGTCGTGGCGACGGCGGGGATGACACAACCTGTGCCGGAGGTAGGGATGAAGCATCCCTTGTCGGCGGCTGATGAGCCGGTACCGGCGGAAAAGGCCGGGACGGTGCGGGAGCCGGTGGGTGTTGTTCCGGAGAAAACGGAGGTGGGTGCGAAATTTGGGGATGGATAA

mRNA sequence

ATGGAGACAGAGAAGCTGCTTGAGGGTTGGAAAAAGTTGTCGTTAACTGCTGAGGAGGAGGAGTTGGCGGTGGATATTGCTTCGGAGGCGGTGGCGGATTCTACTGCTAAAATGGATATCTGTCTGGTGGGTAAGCTTCTGGCGCCGCGTCCAATTGCCAGTGACGTCATTCGCCGGACGCTTTCAATTGCATGGCGTGTCGATTCCGGCCTGGCGGTGGATCGGTTGGGTAAGAATCTTTTTCTGTTTTCTTTTGACAAGGTTCATGATCGAAACAGGGTTCTTCGAACTGGTCCGTGGTTTTTTGACAAATTTTTGTTGGTGCTGGATGTGATGACGCTATGGCCAAACCATCGGAGATGCCGTTTAACAAAAGGGGCTTTGTTGGGGTCTAGTCTACGGGTGCGCATTTTGATTGACATTACTAAACCACTTCGCCGTGGAATAAAGCTGAATGCCGAAGGGCCAATCGGCGGTTGTTGGATTCCTATGCAGTATGAGAAGTTGCCCCAGTACTGTGCTCATTGTGGAAAACTGGATCACGGTTCGAATGATTGTTCCTTGTTGACGGCTCCGATGAGTGATAAGGATAAGGTTGTGGAACGCTTCCAGTATGGACCGTGGCTTCGGTTTGAGGGGTCTGTGAAACAGTCCGGTCAGACGGAGGGGATGAAACAGGTCGTGGCGACGGCGGGGATGACACAACCTGTGCCGGAGGTAGGGATGAAGCATCCCTTGTCGGCGGCTGATGAGCCGGTACCGGCGGAAAAGGCCGGGACGGTGCGGGAGCCGGTGGGTGTTGTTCCGGAGAAAACGGAGGTGGGTGCGAAATTTGGGGATGGATAA

Coding sequence (CDS)

ATGGAGACAGAGAAGCTGCTTGAGGGTTGGAAAAAGTTGTCGTTAACTGCTGAGGAGGAGGAGTTGGCGGTGGATATTGCTTCGGAGGCGGTGGCGGATTCTACTGCTAAAATGGATATCTGTCTGGTGGGTAAGCTTCTGGCGCCGCGTCCAATTGCCAGTGACGTCATTCGCCGGACGCTTTCAATTGCATGGCGTGTCGATTCCGGCCTGGCGGTGGATCGGTTGGGTAAGAATCTTTTTCTGTTTTCTTTTGACAAGGTTCATGATCGAAACAGGGTTCTTCGAACTGGTCCGTGGTTTTTTGACAAATTTTTGTTGGTGCTGGATGTGATGACGCTATGGCCAAACCATCGGAGATGCCGTTTAACAAAAGGGGCTTTGTTGGGGTCTAGTCTACGGGTGCGCATTTTGATTGACATTACTAAACCACTTCGCCGTGGAATAAAGCTGAATGCCGAAGGGCCAATCGGCGGTTGTTGGATTCCTATGCAGTATGAGAAGTTGCCCCAGTACTGTGCTCATTGTGGAAAACTGGATCACGGTTCGAATGATTGTTCCTTGTTGACGGCTCCGATGAGTGATAAGGATAAGGTTGTGGAACGCTTCCAGTATGGACCGTGGCTTCGGTTTGAGGGGTCTGTGAAACAGTCCGGTCAGACGGAGGGGATGAAACAGGTCGTGGCGACGGCGGGGATGACACAACCTGTGCCGGAGGTAGGGATGAAGCATCCCTTGTCGGCGGCTGATGAGCCGGTACCGGCGGAAAAGGCCGGGACGGTGCGGGAGCCGGTGGGTGTTGTTCCGGAGAAAACGGAGGTGGGTGCGAAATTTGGGGATGGATAA

Protein sequence

METEKLLEGWKKLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRTLSIAWRVDSGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLVLDVMTLWPNHRRCRLTKGALLGSSLRVRILIDITKPLRRGIKLNAEGPIGGCWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAPMSDKDKVVERFQYGPWLRFEGSVKQSGQTEGMKQVVATAGMTQPVPEVGMKHPLSAADEPVPAEKAGTVREPVGVVPEKTEVGAKFGDG
Homology
BLAST of Lag0010377 vs. NCBI nr
Match: XP_022156185.1 (uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncharacterized protein LOC111023135 [Momordica charantia])

HSP 1 Score: 211.5 bits (537), Expect = 9.6e-51
Identity = 115/263 (43.73%), Postives = 154/263 (58.56%), Query Frame = 0

Query: 1   METEKLLEGWKKLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRT 60
           M+ E LL  W+K  LT+EE+E+A+D+  +AV  +   +   LVGKLLA R I++DV+ R 
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  LSIAWRVDSGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLVL----------- 120
           L +AW+V+  L V+ +GKNLFLF F +  D NRV++TGPWFFDK L+VL           
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 121 -------------DVMTLWPNHRRC-RL-------------TKGALLGSSLRVRILIDIT 180
                        D+   W N     RL              KG   G+SLR+R+LIDIT
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDIT 180

Query: 181 KPLRRGIKLNAEGPIGGCWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAPMSDKDKVVER 226
           KPLRRGIK+N +GP+GGCWIP+QYE+LP +C  CG + H S+DC        D  +    
Sbjct: 181 KPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATS- 240

BLAST of Lag0010377 vs. NCBI nr
Match: XP_022132681.1 (uncharacterized protein LOC111005481 [Momordica charantia])

HSP 1 Score: 192.2 bits (487), Expect = 6.1e-45
Identity = 103/257 (40.08%), Postives = 143/257 (55.64%), Query Frame = 0

Query: 1   METEKLLEGWKKLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRT 60
           M    LLE WK   LT+EE+++AVDI S A+  +   +++ L+ KLL+ R I+  V++ T
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  LSIAWRVD-SGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLVLD--------- 120
           L IAW++D    +VD +G N+FLF+F++  DRNR+LR GPW FD+ L+++D         
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120

Query: 121 -----VMTLWPNHRRCRL------------------------TKGALLGSSLRVRILIDI 180
                 ++LW +     L                              GS LRVR+  D+
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180

Query: 181 TKPLRRGIKLNAEGPIGGCWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAPMSDKDKVVE 219
            KPL RGIKLN +GP+GGCWIP+QYE+LP +  HCG+LDH   DCS         D V +
Sbjct: 181 MKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCV-----DSVSK 240

BLAST of Lag0010377 vs. NCBI nr
Match: XP_022158377.1 (uncharacterized protein LOC111024874 [Momordica charantia])

HSP 1 Score: 174.1 bits (440), Expect = 1.7e-39
Identity = 98/255 (38.43%), Postives = 141/255 (55.29%), Query Frame = 0

Query: 1   METEKLLEGWKKLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRT 60
           M T  LLE WK   LT+EEEE A+D+ + A A + ++++  LVGKL   RPI   V++ T
Sbjct: 1   MATFDLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNT 60

Query: 61  LSIAWRVD-SGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLVLD--------- 120
           +  AW+++ +   V  LG NLFLFSF +  DRN++ ++GPW FD+ L++++         
Sbjct: 61  MRTAWKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPS 120

Query: 121 -----VMTLWPNH---------RRCRLTKGALL---------------GSSLRVRILIDI 180
                 + +W            R   +  G  L               GS+LRVR+++DI
Sbjct: 121 ELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDI 180

Query: 181 TKPLRRGIKLNAEGPIGGCWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAPMSDKDKVVE 217
           +KPLRRGIKLN +GPIGG WIP+QYE+LP +C HCG               +S   K   
Sbjct: 181 SKPLRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCG---------------LSSSRK--- 237

BLAST of Lag0010377 vs. NCBI nr
Match: XP_028117212.1 (uncharacterized protein LOC114314884 [Camellia sinensis])

HSP 1 Score: 138.3 bits (347), Expect = 1.0e-28
Identity = 87/239 (36.40%), Postives = 115/239 (48.12%), Query Frame = 0

Query: 12  KLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRTLSIAWRVDSGL 71
           +L LT EEEE  V +    +  + A   +CLVGKLL  RP   D +R TL+  W+   G+
Sbjct: 11  RLVLT-EEEEAEVVVDEVHIHSTEANAGLCLVGKLLTMRPFNMDALRSTLTSVWKASKGV 70

Query: 72  AVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLVL--------------DVMTLWPN 131
                G NL L  F  + D+ RV+  GPW FDK L++L                M  W +
Sbjct: 71  VFKTFGDNLVLIQFGHIVDKRRVMINGPWSFDKQLVMLKEFNRALQPSEITFSTMEFWVH 130

Query: 132 HRRCRLTK-----GALLGS-------------------SLRVRILIDITKPLRRGIKLNA 191
                L       G LLG+                   +L +RI I+I KPLRRG+KL A
Sbjct: 131 ASNLPLISMTRDVGVLLGNTLGKFVDMEYGDGGIAWGRALHIRIEINIDKPLRRGLKL-A 190

Query: 192 EGPIGGCWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAPMSDKDKVVERFQYGPWLRFE 213
            G     WI +QYE+LP +C HCG L H  +DC       + +++V  R QYGPWLR E
Sbjct: 191 LGGQEPVWITLQYERLPNFCFHCGLLGHSVHDCGNRLLEGAHREEV--RLQYGPWLRAE 245

BLAST of Lag0010377 vs. NCBI nr
Match: OMO61345.1 (reverse transcriptase [Corchorus capsularis])

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-28
Identity = 89/260 (34.23%), Postives = 132/260 (50.77%), Query Frame = 0

Query: 3   TEKLLEGWKKLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRTLS 62
           TE L + W+  +LT EEE L V +    V ++ A+ + CL+GKLL+ RP+  +V+R  + 
Sbjct: 2   TEGLTDLWENFNLT-EEENLEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVMH 61

Query: 63  IAWRVDSGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLV-------------- 122
           + W++  GL V  +G+NLF+F F+   ++ RV +  PW F+K LLV              
Sbjct: 62  MVWKLAGGLQVREIGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVEDIK 121

Query: 123 LDVMTLWPNHRRCRL-----TKGALLGSS-------------------LRVRILIDITKP 182
           LD  + W       L     + G ++G S                   LR R  +++TKP
Sbjct: 122 LDGCSFWKQAHDLPLGFMNESIGRVIGESFGTVEEIDTCGDKIAWGKFLRFRARLNVTKP 181

Query: 183 LRRGIKLNAEGPIGG-CWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAPMSDKDKVVERF 224
           LRRG+ L A  P GG   I  +YEKLP +C  CG L H  N+C        DK K+++  
Sbjct: 182 LRRGMILTA--PNGGKILISFRYEKLPDFCYVCGCLTHVENECEKAVVMRRDKGKIIK-- 241

BLAST of Lag0010377 vs. ExPASy TrEMBL
Match: A0A6J1DU55 (uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023135 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 4.7e-51
Identity = 115/263 (43.73%), Postives = 154/263 (58.56%), Query Frame = 0

Query: 1   METEKLLEGWKKLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRT 60
           M+ E LL  W+K  LT+EE+E+A+D+  +AV  +   +   LVGKLLA R I++DV+ R 
Sbjct: 1   MDHENLLADWQKFKLTSEEDEIAMDVDVDAVKMAEQGLAYSLVGKLLAKRIISADVLSRV 60

Query: 61  LSIAWRVDSGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLVL----------- 120
           L +AW+V+  L V+ +GKNLFLF F +  D NRV++TGPWFFDK L+VL           
Sbjct: 61  LLLAWKVEHQLTVESIGKNLFLFHFCRECDMNRVMKTGPWFFDKALIVLQKPCSSKNISE 120

Query: 121 -------------DVMTLWPNHRRC-RL-------------TKGALLGSSLRVRILIDIT 180
                        D+   W N     RL              KG   G+SLR+R+LIDIT
Sbjct: 121 LEFNRVAFWIHLFDLPMSWLNKTMAIRLGNAIGNFVDVDCNEKGFSWGASLRIRVLIDIT 180

Query: 181 KPLRRGIKLNAEGPIGGCWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAPMSDKDKVVER 226
           KPLRRGIK+N +GP+GGCWIP+QYE+LP +C  CG + H S+DC        D  +    
Sbjct: 181 KPLRRGIKINIDGPMGGCWIPIQYERLPDFCYFCGVIGHSSHDCDARYLAAQDDSRATS- 240

BLAST of Lag0010377 vs. ExPASy TrEMBL
Match: A0A6J1BSZ1 (uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005481 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.9e-45
Identity = 103/257 (40.08%), Postives = 143/257 (55.64%), Query Frame = 0

Query: 1   METEKLLEGWKKLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRT 60
           M    LLE WK   LT+EE+++AVDI S A+  +   +++ L+ KLL+ R I+  V++ T
Sbjct: 1   MAASNLLEEWKNFKLTSEEDKIAVDIDSSALEGTGKCLELSLICKLLSKRSISCTVLKNT 60

Query: 61  LSIAWRVD-SGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLVLD--------- 120
           L IAW++D    +VD +G N+FLF+F++  DRNR+LR GPW FD+ L+++D         
Sbjct: 61  LKIAWKLDCKAFSVDIIGFNIFLFNFNRSSDRNRILRMGPWTFDRALIIIDNPVSLTKPL 120

Query: 121 -----VMTLWPNHRRCRL------------------------TKGALLGSSLRVRILIDI 180
                 ++LW +     L                              GS LRVR+  D+
Sbjct: 121 DMDFRNVSLWVHFFDLSLACMNKTMATRLGNAIGLFEDVESNANNFCWGSCLRVRVRFDV 180

Query: 181 TKPLRRGIKLNAEGPIGGCWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAPMSDKDKVVE 219
            KPL RGIKLN +GP+GGCWIP+QYE+LP +  HCG+LDH   DCS         D V +
Sbjct: 181 MKPLHRGIKLNLDGPMGGCWIPIQYERLPDFRYHCGRLDHILKDCSDCCV-----DSVSK 240

BLAST of Lag0010377 vs. ExPASy TrEMBL
Match: A0A6J1DX30 (uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024874 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.3e-40
Identity = 98/255 (38.43%), Postives = 141/255 (55.29%), Query Frame = 0

Query: 1   METEKLLEGWKKLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRT 60
           M T  LLE WK   LT+EEEE A+D+ + A A + ++++  LVGKL   RPI   V++ T
Sbjct: 1   MATFDLLEEWKNFKLTSEEEETAIDVDASAPATTGSRLEQILVGKLFIKRPITCPVMKNT 60

Query: 61  LSIAWRVD-SGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLVLD--------- 120
           +  AW+++ +   V  LG NLFLFSF +  DRN++ ++GPW FD+ L++++         
Sbjct: 61  MRTAWKLENNAFEVQSLGYNLFLFSFARALDRNKIYKSGPWTFDRTLVLINKPVALIPPS 120

Query: 121 -----VMTLWPNH---------RRCRLTKGALL---------------GSSLRVRILIDI 180
                 + +W            R   +  G  L               GS+LRVR+++DI
Sbjct: 121 ELDFTKLPIWVRFFDLPLGCITRDMAIRLGNALGGFEEADCDDLNPDWGSNLRVRVMLDI 180

Query: 181 TKPLRRGIKLNAEGPIGGCWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAPMSDKDKVVE 217
           +KPLRRGIKLN +GPIGG WIP+QYE+LP +C HCG               +S   K   
Sbjct: 181 SKPLRRGIKLNLDGPIGGAWIPIQYERLPDFCYHCG---------------LSSSRK--- 237

BLAST of Lag0010377 vs. ExPASy TrEMBL
Match: A0A1R3GTB5 (Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.1e-28
Identity = 89/260 (34.23%), Postives = 132/260 (50.77%), Query Frame = 0

Query: 3   TEKLLEGWKKLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRTLS 62
           TE L + W+  +LT EEE L V +    V ++ A+ + CL+GKLL+ RP+  +V+R  + 
Sbjct: 2   TEGLTDLWENFNLT-EEENLEVAVDPRLVDETLAEGNNCLIGKLLSRRPVNVEVMRNVMH 61

Query: 63  IAWRVDSGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLV-------------- 122
           + W++  GL V  +G+NLF+F F+   ++ RV +  PW F+K LLV              
Sbjct: 62  MVWKLAGGLQVREIGENLFIFQFESDLEKERVYQQTPWNFNKALLVLKSYDAYDCVEDIK 121

Query: 123 LDVMTLWPNHRRCRL-----TKGALLGSS-------------------LRVRILIDITKP 182
           LD  + W       L     + G ++G S                   LR R  +++TKP
Sbjct: 122 LDGCSFWKQAHDLPLGFMNESIGRVIGESFGTVEEIDTCGDKIAWGKFLRFRARLNVTKP 181

Query: 183 LRRGIKLNAEGPIGG-CWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAPMSDKDKVVERF 224
           LRRG+ L A  P GG   I  +YEKLP +C  CG L H  N+C        DK K+++  
Sbjct: 182 LRRGMILTA--PNGGKILISFRYEKLPDFCYVCGCLTHVENECEKAVVMRRDKGKIIK-- 241

BLAST of Lag0010377 vs. ExPASy TrEMBL
Match: A0A2N9FJK9 (CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS14993 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 1.8e-26
Identity = 87/248 (35.08%), Postives = 112/248 (45.16%), Query Frame = 0

Query: 4   EKLLEGWKKLSLTAEEEELAVDIASEAVADSTAKMDICLVGKLLAPRPIASDVIRRTLSI 63
           ++L+E W++ SLT E+E     IA EA+ DS      CL+GKLL  +      ++ T+  
Sbjct: 3   DELVEDWRRFSLT-EDEAPGFIIAEEAMGDSEVIGSHCLLGKLLTAKFCNKAALKATMLR 62

Query: 64  AWRVDSGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLVLDVM----------- 123
            W   SG+    +G+NLFLF F    D  RVL   PW FD  LLVL+V            
Sbjct: 63  IWGAASGVVAQDMGRNLFLFQFQNDADCKRVLHGSPWLFDNNLLVLNVFDGSCPANQISF 122

Query: 124 ---TLWPNHRRCRL------------------------TKGALLGSSLRVRILIDITKPL 183
                W       L                          G   G  LRVRI +D+TKPL
Sbjct: 123 NHCCFWVQFHGIPLFYMTKQTGERLGEAIGNVETVDVSANGVGWGPYLRVRISLDVTKPL 182

Query: 184 RRGIKLNAEGPIGGCWIPMQYEKLPQYCAHCGKLDHGSNDCSLLT---APMSDKDKVVER 211
           +RG +L   G  G  WI  +YE+LP  C HCGKL HG  +C L       +S + K    
Sbjct: 183 QRG-RLITFGSSGQQWIAFKYERLPWLCFHCGKLGHGERECGLKIHSGGALSGEFK---- 242

BLAST of Lag0010377 vs. TAIR 10
Match: AT1G48095.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G36960.1); Has 82 Blast hits to 82 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.3 bits (103), Expect = 1.9e-04
Identity = 32/114 (28.07%), Postives = 53/114 (46.49%), Query Frame = 0

Query: 133 LRVRILIDITKPLRRGIKLNAEGPIGGCWIPMQYEKLPQYCAHCGKLDHGSNDCSLLTAP 192
           +RV+I +  T  LR   ++  E    G  I  +YEKL + C +C ++ H  N+C  L AP
Sbjct: 38  IRVKIRLVFTDRLRFFRRVRFESR-EGAMIGFEYEKLRRICTNCCRITHHVNNCPFLNAP 97

Query: 193 MSDKDKVVERFQYGPWLRFEGS---VKQSGQTEGMKQVVATAGM-TQPVPEVGM 243
           +   D+ VE      W     S     Q+  T      +++A + +QP+P   +
Sbjct: 98  VIHDDE-VEVLDVPVWEEGAASNTITDQTHMTSSDSSDISSASLISQPLPPASL 149

BLAST of Lag0010377 vs. TAIR 10
Match: AT3G42140.1 (zinc ion binding;nucleic acid binding )

HSP 1 Score: 42.4 bits (98), Expect = 7.2e-04
Identity = 44/184 (23.91%), Postives = 72/184 (39.13%), Query Frame = 0

Query: 14  SLTAEEEELAVDIASEAVADSTAKMDICLVGKLLA------PRPIASDVIRRTLSIAWRV 73
           +L  + +E+A+ +  EA+       D  L    LA      P+ +  +V+ R L I    
Sbjct: 4   NLQRQMQEIALGVQEEAINLLIELCDEALRKPNLASLQNRCPKNVDEEVVGRILEI---- 63

Query: 74  DSGLAVDRLGKNLFLFSFDKVHDRNRVLRTGPWFFDKFLLVLDVMTLWPNHRRCRLTKG- 133
                      +   F F        +LR GPW F+ ++ V+   T   +    +     
Sbjct: 64  -----------HKIEFLFQSEESMFSILRRGPWSFNDWMCVIQRWTKLHSDAEFKRIPFW 123

Query: 134 -ALLGSSLR---VRILIDITKPLRRGIKLNAEGPIGGCWIPMQYEKLPQYCAHCGKLDHG 187
             + G  LR    RI+  I +  R G+ L          +  QYEKL  +C  CG L H 
Sbjct: 124 IQIRGIPLRFLTARIITSIGE--RMGLFLETNLGRDVSVLKFQYEKLKNFCTTCGMLSHD 170

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022156185.19.6e-5143.73uncharacterized protein LOC111023135 [Momordica charantia] >XP_022156186.1 uncha... [more]
XP_022132681.16.1e-4540.08uncharacterized protein LOC111005481 [Momordica charantia][more]
XP_022158377.11.7e-3938.43uncharacterized protein LOC111024874 [Momordica charantia][more]
XP_028117212.11.0e-2836.40uncharacterized protein LOC114314884 [Camellia sinensis][more]
OMO61345.12.3e-2834.23reverse transcriptase [Corchorus capsularis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU554.7e-5143.73uncharacterized protein LOC111023135 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1BSZ12.9e-4540.08uncharacterized protein LOC111005481 OS=Momordica charantia OX=3673 GN=LOC111005... [more]
A0A6J1DX308.3e-4038.43uncharacterized protein LOC111024874 OS=Momordica charantia OX=3673 GN=LOC111024... [more]
A0A1R3GTB51.1e-2834.23Reverse transcriptase OS=Corchorus capsularis OX=210143 GN=CCACVL1_23588 PE=4 SV... [more]
A0A2N9FJK91.8e-2635.08CCHC-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS1499... [more]
Match NameE-valueIdentityDescription
AT1G48095.11.9e-0428.07unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT3G42140.17.2e-0423.91zinc ion binding;nucleic acid binding [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 139..187
e-value: 2.9E-9
score: 36.5
IPR025558Domain of unknown function DUF4283PFAMPF14111DUF4283coord: 34..113
e-value: 3.2E-12
score: 46.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 252..281
NoneNo IPR availablePANTHERPTHR31286:SF84SUBFAMILY NOT NAMEDcoord: 14..110
coord: 129..214
IPR040256Uncharacterized protein At4g02000-likePANTHERPTHR31286GLYCINE-RICH CELL WALL STRUCTURAL PROTEIN 1.8-LIKEcoord: 14..110
coord: 129..214

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lag0010377.1Lag0010377.1mRNA