Lag0010352 (gene) Sponge gourd (AG‐4) v1

Overview


Name	Lag0010352
Type	gene
Organism	Luffa acutangula (Sponge gourd (AG‐4) v1)
Description	Biotin carboxyl carrier protein of acetyl-CoA carboxylase
Location	chr9: 46616378 .. 46616782 (+)
RNA-Seq Expression	Lag0010352
Synteny	Lag0010352

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCTTGCTCGCTTCAGCTTCAGCAGCCTCAACAGTGGCCAAACCCCCCTGCACTACTCTGCCTCGCGGCAGCGTCAACCACAAGAGCTCTCATTGCGCGCTGTCTTTTCGGCTCTCCCACAAGCCCAAACTCCGAATTTTCATCAGGGTATGCGTCAATTCATCTCCTTTAGCGATAGAAATCGACAAATATAAAACAAAAACCAAACAACAACCATAGAAAAACACCAGTAAATCGAAAACAACAACATTTATAGAAACTTTCTATCACTGATAGAATAAAGTTTCTATCACTGATATGAACTTTTTCTATCACTGTCGATGCAGAGTAGTGCAGGGGGGTTTGGCCACTGTCGAGGCTGCTGAAGCTGAAGCGAGCAAGGAAGCCATTGGAGATTAG

mRNA sequence

ATGGCTTCCTTGCTCGCTTCAGCTTCAGCAGCCTCAACAGTGGCCAAACCCCCCTGCACTACTCTGCCTCGCGGCAGCGTCAACCACAAGAGCTCTCATTGCGCGCTGTCTTTTCGGCTCTCCCACAAGCCCAAACTCCGAATTTTCATCAGGGGGGGTTTGGCCACTGTCGAGGCTGCTGAAGCTGAAGCGAGCAAGGAAGCCATTGGAGATTAG

Coding sequence (CDS)

ATGGCTTCCTTGCTCGCTTCAGCTTCAGCAGCCTCAACAGTGGCCAAACCCCCCTGCACTACTCTGCCTCGCGGCAGCGTCAACCACAAGAGCTCTCATTGCGCGCTGTCTTTTCGGCTCTCCCACAAGCCCAAACTCCGAATTTTCATCAGGGGGGGTTTGGCCACTGTCGAGGCTGCTGAAGCTGAAGCGAGCAAGGAAGCCATTGGAGATTAG

Protein sequence

MASLLASASAASTVAKPPCTTLPRGSVNHKSSHCALSFRLSHKPKLRIFIRGGLATVEAAEAEASKEAIGD

Homology

[Close]

BLAST of Lag0010352 vs. NCBI nr
Match: XP_038891209.1 (biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like isoform X2 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1  MASLLASASAASTVAKPPCTTLPRGSVNHKSSHCALSFRLSHKPKLRIFIRG 53
          MAS LASASA S VAKPPCT+LPR   N K+SHCALSFRL HKPKLRIF RG
Sbjct: 1  MASSLASASAPSAVAKPPCTSLPRRGFNFKTSHCALSFRLPHKPKLRIFTRG 52

[Close]

BLAST of Lag0010352 vs. NCBI nr
Match: XP_022999093.1 (biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like isoform X2 [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MASLLASASAASTVAKPPCTTLPRGSVNHKSSHCALSFRLSHKPKLRIFIRG 53
          MAS LASASAAS VAK PCT + R ++NHK+SHCALSFRL HKPKLRIF RG
Sbjct: 1  MASSLASASAASAVAKSPCTAIARRNINHKNSHCALSFRLPHKPKLRIFTRG 52

[Close]

BLAST of Lag0010352 vs. NCBI nr
Match: XP_022999091.1 (biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 1  MASLLASASAASTVAKPPCTTLPRGSVNHKSSHCALSFRLSHKPKLRIFIRG 53
          MAS LASASAAS VAK PCT + R ++NHK+SHCALSFRL HKPKLRIF RG
Sbjct: 1  MASSLASASAASAVAKSPCTAIARRNINHKNSHCALSFRLPHKPKLRIFTRG 52

[Close]

BLAST of Lag0010352 vs. NCBI nr
Match: XP_038891208.1 (biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like isoform X1 [Benincasa hispida])

HSP 1 Score: 79.7 bits (195), Expect = 1.1e-11
Identity = 41/52 (78.85%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1  MASLLASASAASTVAKPPCTTLPRGSVNHKSSHCALSFRLSHKPKLRIFIRG 53
          MAS LASASA S VAKPPCT+LPR   N K+SHCALSFRL HKPKLRIF RG
Sbjct: 1  MASSLASASAPSAVAKPPCTSLPRRGFNFKTSHCALSFRLPHKPKLRIFTRG 52

[Close]

BLAST of Lag0010352 vs. NCBI nr
Match: KAG6599342.1 (Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 40/52 (76.92%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 1  MASLLASASAASTVAKPPCTTLPRGSVNHKSSHCALSFRLSHKPKLRIFIRG 53
          MAS LASASAAS VAK PCT + R  +NHK+SHCALSFRL HKPKLRIF RG
Sbjct: 1  MASSLASASAASAVAKSPCTAMARRDINHKNSHCALSFRLPHKPKLRIFTRG 52

The following BLAST results are available for this feature:

BLAST of Lag0010352 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038891209.1	1.1e-11	78.85	biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like is...	[more]
XP_022999093.1	1.1e-11	76.92	biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like is...	[more]
XP_022999091.1	1.1e-11	76.92	biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like is...	[more]
XP_038891208.1	1.1e-11	78.85	biotin carboxyl carrier protein of acetyl-CoA carboxylase, chloroplastic-like is...	[more]
KAG6599342.1	1.4e-11	76.92	Biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic, part...	[more]

BLAST of Lag0010352 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (AG-4) v1
Date Performed: 2022-08-01

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..16
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lag0010352.1	Lag0010352.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006633	fatty acid biosynthetic process
cellular_component	GO:0009317	acetyl-CoA carboxylase complex
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0003989	acetyl-CoA carboxylase activity